Wall clock time and date at job start Mon Mar 30 2020 06:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00007 * 2 1 4 4 H 1.48499 * 109.47090 * 239.99646 * 3 2 1 5 5 H 1.48493 * 109.47070 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47157 * 119.99577 * 3 2 1 7 7 C 1.37874 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00165 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00233 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47275 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47221 * 179.97438 * 10 9 7 12 12 C 1.38266 * 119.93917 * 90.00389 * 11 10 9 13 13 C 1.38146 * 120.05428 * 180.02562 * 12 11 10 14 14 C 1.38733 * 119.94379 * 359.97438 * 13 12 11 15 15 O 1.35904 * 120.05807 * 180.02562 * 14 13 12 16 16 C 1.42897 * 116.99868 * 354.06080 * 15 14 13 17 17 C 1.53369 * 114.56792 * 201.48647 * 16 15 14 18 18 O 1.43350 * 88.49700 * 220.44507 * 17 16 15 19 19 C 1.43352 * 88.32067 * 28.12913 * 18 17 16 20 20 C 1.38740 * 119.88736 * 0.27603 * 14 13 12 21 21 C 1.38136 * 119.93908 * 359.42925 * 20 14 13 22 22 H 0.97002 * 120.00256 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47135 * 59.99901 * 9 7 2 24 24 H 1.08995 * 109.47413 * 299.99480 * 9 7 2 25 25 H 1.09004 * 109.47139 * 60.00004 * 10 9 7 26 26 H 1.09002 * 109.47370 * 300.00203 * 10 9 7 27 27 H 1.07999 * 119.97832 * 0.02562 * 12 11 10 28 28 H 1.08004 * 120.03359 * 179.97438 * 13 12 11 29 29 H 1.09002 * 113.56668 * 335.76366 * 16 15 14 30 30 H 1.09003 * 113.38810 * 105.52662 * 17 16 15 31 31 H 1.08994 * 113.39250 * 335.36997 * 17 16 15 32 32 H 1.08994 * 113.39625 * 86.74409 * 19 18 17 33 33 H 1.09000 * 113.39063 * 216.90556 * 19 18 17 34 34 H 1.08000 * 120.02415 * 179.72285 * 20 14 13 35 35 H 1.08007 * 119.96952 * 180.27219 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4917 -4.9672 0.0012 12 6 1.1463 -5.5652 -1.1967 13 6 0.4551 -6.7613 -1.1989 14 6 0.1080 -7.3627 0.0022 15 8 -0.5715 -8.5397 0.0027 16 6 -1.0103 -9.0360 -1.2634 17 6 -2.1714 -10.0352 -1.1890 18 8 -1.5264 -10.8033 -2.2132 19 6 -0.2711 -10.2902 -1.7486 20 6 0.4512 -6.7579 1.2027 21 6 1.1477 -5.5650 1.1994 22 1 -0.4850 0.8400 0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5568 0.8903 25 1 2.8719 -3.6043 0.8905 26 1 2.8719 -3.6043 -0.8894 27 1 1.4171 -5.0969 -2.1314 28 1 0.1852 -7.2279 -2.1348 29 1 -1.1287 -8.2591 -2.0188 30 1 -3.1265 -9.6128 -1.5015 31 1 -2.2344 -10.5550 -0.2331 32 1 0.1629 -10.8763 -0.9385 33 1 0.4392 -10.0921 -2.5513 34 1 0.1782 -7.2219 2.1390 35 1 1.4190 -5.0960 2.1338 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260248132.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:09 Heat of formation + Delta-G solvation = -50.192973 kcal Electronic energy + Delta-G solvation = -17015.590037 eV Core-core repulsion = 14172.296314 eV Total energy + Delta-G solvation = -2843.293723 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.12747 -40.58447 -38.40773 -35.68443 -33.60069 -32.02523 -30.68025 -29.59065 -27.33459 -26.63749 -24.20692 -23.64652 -22.02303 -21.26247 -19.61982 -18.53776 -17.72951 -17.34297 -16.87317 -16.53349 -16.32559 -15.80292 -15.50574 -15.09079 -14.69698 -14.42458 -14.15628 -13.77101 -13.52836 -13.49534 -13.17878 -12.92593 -12.78682 -12.47188 -12.26430 -11.95904 -11.68472 -11.56637 -11.29753 -11.12910 -10.88268 -10.54429 -9.92233 -8.97078 -8.18461 -6.30820 0.41627 0.48385 1.41186 1.44220 1.52168 2.10854 2.41870 2.79107 2.81749 3.06401 3.14080 3.66482 3.88949 3.99676 4.15157 4.16379 4.29040 4.32284 4.50677 4.52188 4.55707 4.69965 4.79440 4.85062 4.87936 4.90808 5.11263 5.17110 5.34073 5.42409 5.51299 5.59262 5.81534 5.86724 5.92073 6.24259 6.42083 6.86356 7.38665 8.92602 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.051857 B = 0.003587 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.812939 B = 7804.069408 C = 7915.640538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.036 3.964 10 C -0.062 4.062 11 C -0.116 4.116 12 C -0.091 4.091 13 C -0.201 4.201 14 C 0.105 3.895 15 O -0.303 6.303 16 C 0.001 3.999 17 C 0.038 3.962 18 O -0.377 6.377 19 C 0.015 3.985 20 C -0.151 4.151 21 C -0.090 4.090 22 H 0.263 0.737 23 H -0.011 1.011 24 H -0.011 1.011 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.149 0.851 29 H 0.124 0.876 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.145 0.855 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -19.171 -1.694 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.001 4.001 10 C -0.100 4.100 11 C -0.117 4.117 12 C -0.109 4.109 13 C -0.220 4.220 14 C 0.061 3.939 15 O -0.218 6.218 16 C -0.055 4.055 17 C -0.039 4.039 18 O -0.297 6.297 19 C -0.061 4.061 20 C -0.169 4.169 21 C -0.108 4.108 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.146 0.854 28 H 0.167 0.833 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.163 0.837 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.982 -19.383 -1.749 19.486 hybrid contribution 0.183 1.269 -0.094 1.286 sum -0.799 -18.114 -1.842 18.224 Atomic orbital electron populations 1.70104 1.07881 1.27824 1.51591 1.25995 0.95741 1.03400 0.94685 0.85495 0.78254 0.78007 0.79263 1.19085 1.20957 1.19073 1.21707 0.93678 0.92271 1.50682 0.91878 1.18924 0.94057 0.92397 0.94719 1.20510 0.97160 0.90663 1.01639 1.20197 1.00772 0.96773 0.93920 1.21027 0.97200 0.94701 0.97969 1.21365 1.04617 0.98222 0.97762 1.18992 0.94391 0.86222 0.94334 1.86104 1.69054 1.34744 1.31852 1.25765 0.97045 0.96584 0.86147 1.24099 0.97313 0.89346 0.93093 1.89921 1.20318 1.69354 1.50066 1.24441 0.89117 0.92141 1.00431 1.20574 1.02915 0.96391 0.97037 1.21043 0.97159 0.94462 0.98124 0.92797 0.99286 0.99215 0.91823 0.91897 0.85374 0.83306 0.85822 0.87018 0.88077 0.88432 0.87612 0.83695 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.04 1.93 4.95 29.85 0.15 2.07 16 10 C -0.06 -2.59 5.28 29.85 0.16 -2.43 16 11 C -0.12 -4.21 5.13 -19.85 -0.10 -4.31 16 12 C -0.09 -2.92 9.69 22.25 0.22 -2.71 16 13 C -0.20 -5.43 9.03 22.37 0.20 -5.23 16 14 C 0.11 2.86 6.68 22.51 0.15 3.01 16 15 O -0.30 -7.05 10.21 -92.47 -0.94 -8.00 16 16 C 0.00 0.02 4.21 30.87 0.13 0.15 16 17 C 0.04 0.59 8.59 63.85 0.55 1.13 16 18 O -0.38 -7.27 12.74 -148.98 -1.90 -9.17 16 19 C 0.02 0.24 8.60 63.88 0.55 0.79 16 20 C -0.15 -4.30 9.99 22.37 0.22 -4.07 16 21 C -0.09 -2.93 9.69 22.25 0.22 -2.71 16 22 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 23 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H 0.06 2.53 8.08 -2.38 -0.02 2.51 16 26 H 0.06 2.50 8.09 -2.39 -0.02 2.48 16 27 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.15 3.10 5.90 -2.91 -0.02 3.08 16 29 H 0.12 2.08 5.96 -2.39 -0.01 2.07 16 30 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -66.83 300.63 3.67 -63.15 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.07 Total: 9.61 kcal Atomic # 6 Polarization: -47.88 SS G_CDS: 3.13 Total: -44.75 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 0.28 Total: -57.03 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -2.84 Total: -17.17 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -66.83 3.67 -63.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260248132.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.961 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds