Wall clock time and date at job start Mon Mar 30 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46807 * 2 1 4 4 N 1.30089 * 124.95391 * 270.17199 * 3 2 1 5 5 C 1.35831 * 109.64184 * 180.26839 * 4 3 2 6 6 C 1.39750 * 133.55408 * 179.76526 * 5 4 3 7 7 C 1.36583 * 119.91755 * 179.97438 * 6 5 4 8 8 C 1.38980 * 120.64430 * 359.97438 * 7 6 5 9 9 F 1.35100 * 119.79993 * 179.97438 * 8 7 6 10 10 C 1.38054 * 120.39599 * 0.02562 * 8 7 6 11 11 C 1.38832 * 119.67319 * 359.97438 * 10 8 7 12 12 N 1.36100 * 124.95375 * 90.00037 * 3 2 1 13 13 C 1.46491 * 126.34866 * 0.02562 * 12 3 2 14 14 C 1.50702 * 109.46957 * 269.70973 * 13 12 3 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 H 1.08995 * 109.47561 * 60.00385 * 1 2 3 23 23 H 1.09001 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47512 * 299.99898 * 1 2 3 25 25 H 1.08998 * 109.47512 * 240.00102 * 2 1 3 26 26 H 1.08998 * 109.47106 * 119.99416 * 2 1 3 27 27 H 1.08004 * 120.04008 * 359.95753 * 6 5 4 28 28 H 1.07991 * 119.67827 * 180.02562 * 7 6 5 29 29 H 1.07994 * 120.16496 * 180.02562 * 10 8 7 30 30 H 1.09004 * 109.47166 * 149.71239 * 13 12 3 31 31 H 1.08994 * 109.47507 * 29.70946 * 13 12 3 32 32 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2776 2.1246 -1.0662 5 6 2.7209 3.3575 -0.7076 6 6 3.1240 4.4837 -1.4301 7 6 3.5284 5.6084 -0.7691 8 6 3.5436 5.6467 0.6201 9 9 3.9473 6.7679 1.2565 10 6 3.1495 4.5455 1.3536 11 6 2.7356 3.3945 0.6968 12 7 2.2921 2.1560 1.1155 13 6 2.1361 1.7131 2.5031 14 6 0.7451 2.0407 2.9816 15 1 0.0470 2.5295 2.3182 16 6 0.3617 1.7107 4.2642 17 7 1.2117 1.1150 5.0719 18 14 -1.3649 2.1098 4.8548 19 1 -2.1202 2.7747 3.7627 20 1 -2.0579 0.8549 5.2426 21 1 -1.2895 3.0166 6.0284 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 3.1159 4.4647 -2.5100 28 1 3.8387 6.4766 -1.3313 29 1 3.1624 4.5795 2.4329 30 1 2.8661 2.2233 3.1316 31 1 2.2961 0.6365 2.5611 32 1 0.9421 0.8832 5.9744 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260250040.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:37 Heat of formation + Delta-G solvation = -6.703513 kcal Electronic energy + Delta-G solvation = -17667.264023 eV Core-core repulsion = 14734.688590 eV Total energy + Delta-G solvation = -2932.575433 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.87699 -43.09638 -38.26753 -35.97869 -34.36412 -34.10663 -31.54323 -29.41321 -29.15476 -25.49746 -25.27044 -23.15292 -22.87442 -20.76696 -18.98126 -18.74168 -18.11943 -17.39826 -16.76272 -16.62974 -16.19943 -15.71407 -15.47593 -15.07801 -14.75423 -14.47159 -14.06008 -13.93357 -13.69697 -13.39946 -13.18672 -12.79016 -12.59326 -12.39926 -12.23597 -12.15865 -11.94508 -11.82352 -11.15791 -11.02660 -10.75433 -9.31103 -8.97673 -8.38234 -6.54498 -0.15737 0.44328 1.33224 1.36216 1.46867 1.71772 1.89319 2.30563 2.74038 2.93301 3.15044 3.27948 3.57140 3.98286 4.10276 4.20406 4.30569 4.33281 4.39765 4.62809 4.65997 4.86621 4.88829 4.99882 5.04540 5.11715 5.18906 5.39199 5.49124 5.54164 5.63613 5.75014 5.88460 6.21776 6.56993 6.92227 7.17186 8.68746 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.008436 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.691127 B = 3318.398027 C = 4366.344896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.040 4.040 3 C 0.281 3.719 4 N -0.520 5.520 5 C 0.013 3.987 6 C -0.037 4.037 7 C -0.148 4.148 8 C 0.100 3.900 9 F -0.140 7.140 10 C -0.154 4.154 11 C 0.043 3.957 12 N -0.469 5.469 13 C 0.253 3.747 14 C -0.547 4.547 15 H 0.050 0.950 16 C 0.028 3.972 17 N -0.915 5.915 18 Si 0.963 3.037 19 H -0.273 1.273 20 H -0.268 1.268 21 H -0.277 1.277 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.040 0.960 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.166 0.834 28 H 0.178 0.822 29 H 0.119 0.881 30 H 0.024 0.976 31 H 0.048 0.952 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 2.409 -9.615 10.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.079 4.079 3 C 0.016 3.984 4 N -0.241 5.241 5 C -0.107 4.107 6 C -0.056 4.056 7 C -0.169 4.169 8 C 0.079 3.921 9 F -0.119 7.119 10 C -0.176 4.176 11 C -0.069 4.069 12 N -0.154 5.154 13 C 0.133 3.867 14 C -0.585 4.585 15 H 0.069 0.931 16 C -0.174 4.174 17 N -0.553 5.553 18 Si 0.787 3.213 19 H -0.197 1.197 20 H -0.192 1.192 21 H -0.202 1.202 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.059 0.941 25 H 0.135 0.865 26 H 0.102 0.898 27 H 0.184 0.816 28 H 0.195 0.805 29 H 0.137 0.863 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.762 2.038 -10.064 10.418 hybrid contribution -0.547 0.589 2.057 2.208 sum 1.215 2.627 -8.007 8.514 Atomic orbital electron populations 1.21667 0.92960 1.03477 1.01644 1.20242 0.97440 0.85268 1.04924 1.24228 0.96536 0.97161 0.80446 1.70361 1.22548 1.03515 1.27667 1.19653 1.05815 0.95062 0.90217 1.20106 0.96068 0.88424 1.01000 1.20833 1.04447 1.00660 0.90982 1.17246 1.01651 0.82074 0.91155 1.91464 1.88344 1.49342 1.82708 1.19855 1.06022 0.91594 1.00128 1.18846 1.04062 0.88517 0.95487 1.45956 1.50021 1.10080 1.09379 1.19349 0.97388 0.96284 0.73631 1.21349 0.97491 1.41008 0.98677 0.93144 1.25640 1.01620 0.94041 0.96082 1.69997 1.36768 1.40492 1.08020 0.85427 0.79157 0.78516 0.78187 1.19750 1.19249 1.20218 0.92473 0.88996 0.94105 0.86504 0.89810 0.81623 0.80496 0.86278 0.95814 0.93364 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 9.89 71.98 0.71 -3.55 16 2 C -0.04 -1.28 6.23 29.85 0.19 -1.09 16 3 C 0.28 11.33 7.11 137.91 0.98 12.31 16 4 N -0.52 -20.85 11.27 -179.90 -2.03 -22.87 16 5 C 0.01 0.49 7.23 39.44 0.29 0.78 16 6 C -0.04 -1.09 10.05 22.25 0.22 -0.87 16 7 C -0.15 -4.01 9.94 22.06 0.22 -3.79 16 8 C 0.10 3.32 7.29 22.40 0.16 3.48 16 9 F -0.14 -4.47 17.26 44.97 0.78 -3.70 16 10 C -0.15 -6.16 10.03 22.37 0.22 -5.94 16 11 C 0.04 1.86 6.87 38.86 0.27 2.12 16 12 N -0.47 -21.13 2.79 -509.63 -1.42 -22.55 16 13 C 0.25 12.51 5.69 85.64 0.49 13.00 16 14 C -0.55 -28.88 9.02 25.60 0.23 -28.65 16 15 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 16 C 0.03 1.45 5.46 84.66 0.46 1.92 16 17 N -0.91 -49.74 13.29 21.45 0.28 -49.46 16 18 Si 0.96 41.66 29.54 68.60 2.03 43.68 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.04 1.52 7.77 -2.39 -0.02 1.50 16 25 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.08 2.70 7.01 -2.39 -0.02 2.69 16 27 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 28 H 0.18 3.26 8.06 -2.92 -0.02 3.23 16 29 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 30 H 0.02 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 2.39 6.99 -2.39 -0.02 2.38 16 32 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 Total: -1.00 -60.40 284.91 5.21 -55.19 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.13 Total: 10.00 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 4.44 Total: -10.29 kcal Atomic # 7 Polarization: -91.72 SS G_CDS: -3.16 Total: -94.88 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -60.40 5.21 -55.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260250040.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.488 kcal (2) G-P(sol) polarization free energy of solvation -60.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds