Wall clock time and date at job start Mon Mar 30 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99863 * 2 1 4 4 H 1.48503 * 109.47192 * 270.00266 * 3 2 1 5 5 H 1.48506 * 109.47280 * 29.99965 * 3 2 1 6 6 H 1.48501 * 109.47669 * 149.99952 * 3 2 1 7 7 C 1.37880 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99575 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99813 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47321 * 299.99561 * 9 7 2 11 11 C 1.50702 * 109.46822 * 179.97438 * 9 7 2 12 12 C 1.38163 * 120.03225 * 299.98248 * 11 9 7 13 13 C 1.38245 * 120.05956 * 180.02562 * 12 11 9 14 14 C 1.38285 * 120.11020 * 0.02562 * 13 12 11 15 15 C 1.38125 * 120.05576 * 359.68934 * 14 13 12 16 16 C 1.50702 * 120.02894 * 180.32037 * 15 14 13 17 17 O 1.42902 * 109.47040 * 0.26676 * 16 15 14 18 18 C 1.38713 * 120.02679 * 119.99783 * 11 9 7 19 19 O 1.35896 * 120.05479 * 359.97438 * 18 11 9 20 20 C 1.52995 * 109.47368 * 60.00204 * 9 7 2 21 21 C 1.53007 * 117.49665 * 248.74427 * 20 9 7 22 22 C 1.53001 * 117.49863 * 180.08698 * 20 9 7 23 23 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 24 24 H 1.08008 * 119.97013 * 359.97438 * 12 11 9 25 25 H 1.08007 * 119.94120 * 179.97438 * 13 12 11 26 26 H 1.08001 * 119.97208 * 179.97438 * 14 13 12 27 27 H 1.09001 * 109.47035 * 120.26736 * 16 15 14 28 28 H 1.08997 * 109.46778 * 240.27151 * 16 15 14 29 29 H 0.96696 * 113.99763 * 179.97438 * 17 16 15 30 30 H 0.96700 * 114.00170 * 89.99949 * 19 18 11 31 31 H 1.09001 * 115.55320 * 34.40760 * 20 9 7 32 32 H 1.08997 * 117.49602 * 0.02562 * 21 20 9 33 33 H 1.08999 * 117.49818 * 145.01941 * 21 20 9 34 34 H 1.09004 * 117.49602 * 214.97361 * 22 20 9 35 35 H 1.08992 * 117.49924 * 359.96823 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 6 2.2303 -3.6445 0.0005 12 6 3.1340 -3.7817 -1.0355 13 6 4.0323 -4.8325 -1.0364 14 6 4.0286 -5.7492 -0.0010 15 6 3.1311 -5.6132 1.0401 16 6 3.1323 -6.6085 2.1717 17 8 4.1487 -7.5870 1.9443 18 6 2.2250 -4.5623 1.0406 19 8 1.3373 -4.4295 2.0610 20 6 0.3719 -2.5805 -1.2490 21 6 -1.1439 -2.5129 -1.0519 22 6 -0.4796 -3.8383 -1.4330 23 1 -0.4850 0.8400 0.0004 24 1 3.1381 -3.0677 -1.8460 25 1 4.7377 -4.9381 -1.8475 26 1 4.7310 -6.5695 -0.0042 27 1 3.3297 -6.0910 3.1105 28 1 2.1607 -7.0995 2.2247 29 1 4.2073 -8.2610 2.6352 30 1 0.4986 -4.8881 1.9148 31 1 0.7841 -2.1162 -2.1449 32 1 -1.5147 -2.4100 -0.0321 33 1 -1.7289 -2.0046 -1.8184 34 1 -0.6279 -4.2013 -2.4501 35 1 -0.4131 -4.6080 -0.6642 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260253914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:28 Heat of formation + Delta-G solvation = -71.120787 kcal Electronic energy + Delta-G solvation = -18228.128098 eV Core-core repulsion = 15383.926876 eV Total energy + Delta-G solvation = -2844.201221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.00896 -38.37696 -37.65803 -37.10883 -34.67657 -32.91944 -31.27275 -28.77080 -26.82506 -25.35075 -23.03842 -22.66616 -22.36178 -20.41582 -19.26179 -18.48750 -17.98363 -16.95786 -16.48166 -16.21446 -16.13802 -15.73922 -15.46070 -14.67477 -14.64812 -14.52387 -13.89479 -13.30517 -12.99688 -12.87164 -12.79634 -12.60068 -12.19801 -12.17177 -11.90267 -11.82324 -11.64443 -11.18999 -11.13746 -10.61310 -10.52969 -10.16023 -9.34484 -9.23290 -8.03868 -6.15787 0.44977 0.62991 1.39679 1.41699 1.50758 2.44669 2.88767 3.22332 3.29198 3.40817 3.48515 4.04961 4.20016 4.28895 4.31144 4.46165 4.50778 4.59625 4.60245 4.74401 4.86775 4.91677 5.08940 5.16091 5.32016 5.33858 5.50277 5.55822 5.64310 5.65663 5.76268 5.85673 6.10211 6.15394 6.40240 6.90820 6.94398 6.96861 7.49475 8.99936 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.007282 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.009219 B = 3844.094551 C = 4213.122136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.024 3.976 3 Si 0.943 3.057 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.042 0.958 9 C 0.116 3.884 10 H 0.015 0.985 11 C -0.076 4.076 12 C -0.111 4.111 13 C -0.130 4.130 14 C -0.109 4.109 15 C -0.130 4.130 16 C 0.134 3.866 17 O -0.582 6.582 18 C 0.083 3.917 19 O -0.501 6.501 20 C -0.100 4.100 21 C -0.141 4.141 22 C -0.188 4.188 23 H 0.258 0.742 24 H 0.113 0.887 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.401 0.599 30 H 0.394 0.606 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 -13.365 0.918 13.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.176 4.176 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.060 0.940 9 C 0.097 3.903 10 H 0.033 0.967 11 C -0.076 4.076 12 C -0.129 4.129 13 C -0.148 4.148 14 C -0.127 4.127 15 C -0.130 4.130 16 C 0.057 3.943 17 O -0.391 6.391 18 C 0.039 3.961 19 O -0.312 6.312 20 C -0.119 4.119 21 C -0.178 4.178 22 C -0.225 4.225 23 H 0.067 0.933 24 H 0.131 0.869 25 H 0.162 0.838 26 H 0.160 0.840 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.252 0.748 30 H 0.251 0.749 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.481 -12.554 0.659 13.044 hybrid contribution -0.309 0.924 0.312 1.023 sum 3.172 -11.630 0.971 12.094 Atomic orbital electron populations 1.70119 1.06451 1.26672 1.49902 1.25574 0.95699 1.01468 0.94901 0.85790 0.78704 0.80380 0.78132 1.20089 1.20886 1.20224 1.21270 0.92322 0.91426 1.51737 0.93959 1.17149 0.90985 0.89662 0.92488 0.96709 1.20669 0.97830 0.95986 0.93148 1.20994 0.95379 0.98104 0.98408 1.21399 0.99137 0.94606 0.99652 1.20897 0.98922 0.99699 0.93140 1.20205 0.98489 0.96077 0.98242 1.20570 0.91383 0.88084 0.94259 1.86376 1.57144 1.42638 1.52893 1.18155 0.94219 0.94831 0.88940 1.84784 1.28938 1.77246 1.40278 1.21982 0.92709 0.98373 0.98841 1.22360 0.96320 0.98795 1.00341 1.23039 1.06635 0.91216 1.01645 0.93283 0.86857 0.83848 0.83999 0.92256 0.90896 0.74830 0.74876 0.91950 0.91204 0.90854 0.88746 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.44 11.43 21.45 0.25 -50.19 16 2 C 0.02 1.35 5.30 84.66 0.45 1.80 16 3 Si 0.94 44.34 29.54 68.60 2.03 46.36 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 7 C -0.53 -29.59 8.22 25.60 0.21 -29.38 16 8 H 0.04 2.41 7.60 -2.91 -0.02 2.39 16 9 C 0.12 5.77 2.07 -12.29 -0.03 5.74 16 10 H 0.01 0.82 6.75 -2.39 -0.02 0.80 16 11 C -0.08 -3.29 4.40 -19.77 -0.09 -3.38 16 12 C -0.11 -4.40 8.82 22.25 0.20 -4.21 16 13 C -0.13 -4.28 10.04 22.28 0.22 -4.06 16 14 C -0.11 -3.46 9.37 22.25 0.21 -3.25 16 15 C -0.13 -4.28 5.89 -19.77 -0.12 -4.40 16 16 C 0.13 3.33 6.91 71.24 0.49 3.83 16 17 O -0.58 -12.48 12.14 -148.98 -1.81 -14.29 16 18 C 0.08 3.20 6.65 22.51 0.15 3.35 16 19 O -0.50 -18.29 11.70 -92.38 -1.08 -19.37 16 20 C -0.10 -4.64 3.87 -10.79 -0.04 -4.68 16 21 C -0.14 -6.11 9.04 30.62 0.28 -5.83 16 22 C -0.19 -7.08 9.87 30.62 0.30 -6.77 16 23 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 24 H 0.11 4.63 8.05 -2.91 -0.02 4.61 16 25 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 26 H 0.14 3.99 7.00 -2.91 -0.02 3.97 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.40 4.20 9.12 -74.06 -0.68 3.53 16 30 H 0.39 10.74 9.06 -74.06 -0.67 10.06 16 31 H 0.06 3.09 8.11 -2.39 -0.02 3.07 16 32 H 0.07 3.23 8.05 -2.39 -0.02 3.21 16 33 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 34 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -65.93 297.42 1.38 -64.55 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.24 Total: 24.18 kcal Atomic # 6 Polarization: -53.49 SS G_CDS: 2.24 Total: -51.25 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.25 Total: -50.19 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -2.89 Total: -33.65 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -65.93 1.38 -64.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260253914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.575 kcal (2) G-P(sol) polarization free energy of solvation -65.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds