Wall clock time and date at job start Mon Mar 30 2020 06:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31027 * 1 3 3 Si 1.86801 * 119.99872 * 2 1 4 4 H 1.48501 * 109.47461 * 275.63718 * 3 2 1 5 5 H 1.48495 * 109.47137 * 35.63766 * 3 2 1 6 6 H 1.48504 * 109.47041 * 155.63614 * 3 2 1 7 7 C 1.39697 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99969 * 4.28322 * 7 2 1 9 9 C 1.41377 * 119.99952 * 184.28283 * 7 2 1 10 10 C 1.46778 * 127.41460 * 309.14605 * 9 7 2 11 11 C 1.34297 * 106.49863 * 180.02562 * 10 9 7 12 12 O 1.34439 * 109.21725 * 359.96741 * 11 10 9 13 13 C 1.33857 * 111.20981 * 0.03286 * 12 11 10 14 14 C 1.50709 * 126.04716 * 179.97438 * 13 12 11 15 15 C 1.54259 * 110.03376 * 57.16799 * 14 13 12 16 16 C 1.54885 * 104.19642 * 217.10437 * 15 14 13 17 17 C 1.54889 * 102.75049 * 37.93836 * 16 15 14 18 18 C 1.53873 * 110.03358 * 299.99396 * 14 13 12 19 19 C 1.51385 * 107.52704 * 179.97438 * 11 10 9 20 20 O 1.43958 * 105.92100 * 17.56857 * 19 11 10 21 21 C 1.43914 * 104.27287 * 332.37915 * 20 19 11 22 22 H 0.96998 * 119.99979 * 359.97438 * 1 2 3 23 23 H 1.09004 * 110.00951 * 178.60849 * 14 13 12 24 24 H 1.09000 * 110.48632 * 335.77722 * 15 14 13 25 25 H 1.08995 * 110.49162 * 98.42170 * 15 14 13 26 26 H 1.09003 * 110.75521 * 279.62675 * 16 15 14 27 27 H 1.08999 * 110.75916 * 156.25659 * 16 15 14 28 28 H 1.08999 * 110.49000 * 203.38479 * 17 16 15 29 29 H 1.09005 * 110.60054 * 80.79523 * 17 16 15 30 30 H 1.08995 * 110.03297 * 238.56990 * 18 14 13 31 31 H 1.09004 * 110.03071 * 359.96215 * 18 14 13 32 32 H 1.09002 * 110.15777 * 136.67632 * 19 11 10 33 33 H 1.08992 * 110.16464 * 258.44817 * 19 11 10 34 34 H 1.09003 * 110.17067 * 268.32102 * 21 20 19 35 35 H 1.09000 * 110.14554 * 146.50776 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.3727 2.1153 -1.3933 5 1 1.5063 2.6153 0.8157 6 1 3.5963 1.4088 0.5776 7 6 2.0088 -1.2098 -0.0005 8 1 1.4711 -2.1437 -0.0708 9 6 3.4196 -1.2115 0.0909 10 6 4.3671 -0.4429 -0.7252 11 6 5.5953 -0.7613 -0.2851 12 8 5.4892 -1.6481 0.7197 13 6 4.2080 -1.9417 0.9733 14 6 3.7087 -2.8951 2.0283 15 6 4.2235 -2.4634 3.4169 16 6 4.5201 -3.7985 4.1439 17 6 5.1024 -4.6818 3.0126 18 6 4.2674 -4.3055 1.7712 19 6 6.5931 0.0198 -1.1133 20 8 5.8451 1.0807 -1.7357 21 6 4.5094 0.5561 -1.8453 22 1 -0.4850 0.8400 0.0004 23 1 2.6189 -2.9186 2.0240 24 1 5.1338 -1.8718 3.3194 25 1 3.4571 -1.9008 3.9500 26 1 3.6032 -4.2341 4.5410 27 1 5.2541 -3.6521 4.9363 28 1 4.9773 -5.7381 3.2506 29 1 6.1550 -4.4506 2.8488 30 1 3.4489 -5.0137 1.6431 31 1 4.8992 -4.3006 0.8829 32 1 7.3707 0.4346 -0.4719 33 1 7.0360 -0.6237 -1.8734 34 1 4.3772 0.0630 -2.8084 35 1 3.7804 1.3581 -1.7292 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260256058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:13 Heat of formation + Delta-G solvation = -20.201834 kcal Electronic energy + Delta-G solvation = -18564.131374 eV Core-core repulsion = 15722.138164 eV Total energy + Delta-G solvation = -2841.993210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45076 -38.45731 -37.27463 -33.65787 -31.54684 -30.47207 -28.31212 -28.27949 -27.57595 -24.86432 -23.02795 -20.45577 -20.17869 -19.71365 -18.19155 -17.43706 -16.31043 -15.58435 -15.32428 -15.21335 -14.63231 -14.36651 -14.15737 -13.43115 -13.02935 -12.94189 -12.74504 -12.23252 -12.13574 -11.38070 -11.12732 -11.00808 -10.79123 -10.69982 -10.68004 -10.40424 -10.29940 -10.11692 -10.04595 -9.92419 -9.56428 -8.93452 -7.96394 -7.10484 -6.53805 -4.35331 2.60051 3.07322 3.22571 3.29220 3.39530 3.59975 4.16342 4.35040 4.94399 5.00233 5.05259 5.11178 5.29052 5.59609 5.62238 5.65517 5.82032 5.93296 5.96133 5.96912 5.98934 6.07033 6.10441 6.20950 6.23341 6.39885 6.55341 6.62697 6.69954 6.80108 6.95788 6.97916 7.20575 7.27241 7.68777 8.26545 8.52057 8.72834 9.07704 10.50250 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.010215 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.927265 B = 2740.486605 C = 3737.640861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.092 3.908 3 Si 0.880 3.120 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.464 4.464 8 H 0.089 0.911 9 C 0.050 3.950 10 C -0.256 4.256 11 C -0.101 4.101 12 O -0.160 6.160 13 C -0.122 4.122 14 C 0.023 3.977 15 C -0.119 4.119 16 C -0.124 4.124 17 C -0.122 4.122 18 C -0.120 4.120 19 C 0.155 3.845 20 O -0.362 6.362 21 C 0.099 3.901 22 H 0.276 0.724 23 H 0.103 0.897 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.005 -3.540 2.912 10.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.119 4.119 3 Si 0.709 3.291 4 H -0.193 1.193 5 H -0.215 1.215 6 H -0.167 1.167 7 C -0.497 4.497 8 H 0.107 0.893 9 C 0.047 3.953 10 C -0.259 4.259 11 C -0.152 4.152 12 O -0.059 6.059 13 C -0.170 4.170 14 C 0.004 3.996 15 C -0.156 4.156 16 C -0.162 4.162 17 C -0.160 4.160 18 C -0.158 4.158 19 C 0.078 3.922 20 O -0.281 6.281 21 C 0.024 3.976 22 H 0.086 0.914 23 H 0.121 0.879 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.079 -3.338 2.989 10.124 hybrid contribution 0.042 0.742 -0.180 0.765 sum 9.120 -2.596 2.809 9.890 Atomic orbital electron populations 1.69673 1.07123 1.28735 1.42670 1.25596 0.94534 0.99901 0.91911 0.86927 0.81706 0.81951 0.78558 1.19250 1.21510 1.16677 1.18346 0.87650 0.94871 1.48876 0.89341 1.18407 0.93518 0.92796 0.90567 1.23002 0.95931 1.05808 1.01168 1.22827 0.98042 0.99158 0.95147 1.83142 1.29940 1.49665 1.43133 1.22836 0.78624 1.11426 1.04082 1.19922 1.00241 0.89903 0.89496 1.22454 1.01180 0.96799 0.95190 1.22499 1.00268 0.96179 0.97245 1.22345 0.99501 0.98744 0.95382 1.22278 0.99204 0.96399 0.97938 1.20912 0.90735 0.87665 0.92909 1.89132 1.21274 1.37047 1.80622 1.21511 0.83923 0.96133 0.96032 0.91364 0.87939 0.91637 0.91565 0.91622 0.92143 0.92295 0.92022 0.91925 0.91796 0.89103 0.90472 0.91023 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.09 13.94 55.54 0.77 -23.31 16 2 C 0.09 2.54 5.51 -17.35 -0.10 2.44 16 3 Si 0.88 21.51 23.98 -169.99 -4.08 17.44 16 4 H -0.27 -6.14 5.93 56.52 0.34 -5.80 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.24 -6.17 5.96 56.52 0.34 -5.83 16 7 C -0.46 -12.85 9.36 -37.84 -0.35 -13.21 16 8 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 9 C 0.05 1.28 4.97 -104.95 -0.52 0.75 16 10 C -0.26 -6.12 4.74 -102.53 -0.49 -6.61 16 11 C -0.10 -2.19 8.37 -35.36 -0.30 -2.49 16 12 O -0.16 -3.58 10.38 6.52 0.07 -3.51 16 13 C -0.12 -2.79 5.68 -34.00 -0.19 -2.98 16 14 C 0.02 0.44 3.33 -90.65 -0.30 0.14 16 15 C -0.12 -1.99 6.35 -25.08 -0.16 -2.15 16 16 C -0.12 -1.68 6.91 -24.74 -0.17 -1.85 16 17 C -0.12 -1.67 6.83 -25.07 -0.17 -1.84 16 18 C -0.12 -1.97 6.45 -25.61 -0.17 -2.14 16 19 C 0.15 2.69 7.65 36.34 0.28 2.97 16 20 O -0.36 -7.12 11.77 -35.23 -0.41 -7.54 16 21 C 0.10 2.12 7.02 36.04 0.25 2.37 16 22 H 0.28 7.22 8.30 -40.82 -0.34 6.89 16 23 H 0.10 2.11 7.61 -51.93 -0.39 1.71 16 24 H 0.06 1.16 7.73 -51.93 -0.40 0.76 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.12 7.67 -51.93 -0.40 0.72 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.09 2.05 3.59 -51.93 -0.19 1.86 16 LS Contribution 278.45 15.07 4.20 4.20 Total: -1.00 -29.50 278.45 -6.71 -36.21 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.87 Total: 1.12 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -2.38 Total: -24.60 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.77 Total: -23.31 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.35 Total: -11.05 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.08 Total: 17.44 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.50 -6.71 -36.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.007 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds