Wall clock time and date at job start Mon Mar 30 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31027 * 1 3 3 Si 1.86801 * 119.99872 * 2 1 4 4 H 1.48501 * 109.47461 * 275.63718 * 3 2 1 5 5 H 1.48495 * 109.47137 * 35.63766 * 3 2 1 6 6 H 1.48504 * 109.47041 * 155.63614 * 3 2 1 7 7 C 1.39697 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99969 * 4.28322 * 7 2 1 9 9 C 1.41377 * 119.99952 * 184.28283 * 7 2 1 10 10 C 1.46778 * 127.41460 * 309.14605 * 9 7 2 11 11 C 1.34297 * 106.49863 * 180.02562 * 10 9 7 12 12 O 1.34439 * 109.21725 * 359.96741 * 11 10 9 13 13 C 1.33857 * 111.20981 * 0.03286 * 12 11 10 14 14 C 1.50709 * 126.04716 * 179.97438 * 13 12 11 15 15 C 1.54259 * 110.03376 * 57.16799 * 14 13 12 16 16 C 1.54885 * 104.19642 * 217.10437 * 15 14 13 17 17 C 1.54889 * 102.75049 * 37.93836 * 16 15 14 18 18 C 1.53873 * 110.03358 * 299.99396 * 14 13 12 19 19 C 1.51385 * 107.52704 * 179.97438 * 11 10 9 20 20 O 1.43958 * 105.92100 * 17.56857 * 19 11 10 21 21 C 1.43914 * 104.27287 * 332.37915 * 20 19 11 22 22 H 0.96998 * 119.99979 * 359.97438 * 1 2 3 23 23 H 1.09004 * 110.00951 * 178.60849 * 14 13 12 24 24 H 1.09000 * 110.48632 * 335.77722 * 15 14 13 25 25 H 1.08995 * 110.49162 * 98.42170 * 15 14 13 26 26 H 1.09003 * 110.75521 * 279.62675 * 16 15 14 27 27 H 1.08999 * 110.75916 * 156.25659 * 16 15 14 28 28 H 1.08999 * 110.49000 * 203.38479 * 17 16 15 29 29 H 1.09005 * 110.60054 * 80.79523 * 17 16 15 30 30 H 1.08995 * 110.03297 * 238.56990 * 18 14 13 31 31 H 1.09004 * 110.03071 * 359.96215 * 18 14 13 32 32 H 1.09002 * 110.15777 * 136.67632 * 19 11 10 33 33 H 1.08992 * 110.16464 * 258.44817 * 19 11 10 34 34 H 1.09003 * 110.17067 * 268.32102 * 21 20 19 35 35 H 1.09000 * 110.14554 * 146.50776 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.3727 2.1153 -1.3933 5 1 1.5063 2.6153 0.8157 6 1 3.5963 1.4088 0.5776 7 6 2.0088 -1.2098 -0.0005 8 1 1.4711 -2.1437 -0.0708 9 6 3.4196 -1.2115 0.0909 10 6 4.3671 -0.4429 -0.7252 11 6 5.5953 -0.7613 -0.2851 12 8 5.4892 -1.6481 0.7197 13 6 4.2080 -1.9417 0.9733 14 6 3.7087 -2.8951 2.0283 15 6 4.2235 -2.4634 3.4169 16 6 4.5201 -3.7985 4.1439 17 6 5.1024 -4.6818 3.0126 18 6 4.2674 -4.3055 1.7712 19 6 6.5931 0.0198 -1.1133 20 8 5.8451 1.0807 -1.7357 21 6 4.5094 0.5561 -1.8453 22 1 -0.4850 0.8400 0.0004 23 1 2.6189 -2.9186 2.0240 24 1 5.1338 -1.8718 3.3194 25 1 3.4571 -1.9008 3.9500 26 1 3.6032 -4.2341 4.5410 27 1 5.2541 -3.6521 4.9363 28 1 4.9773 -5.7381 3.2506 29 1 6.1550 -4.4506 2.8488 30 1 3.4489 -5.0137 1.6431 31 1 4.8992 -4.3006 0.8829 32 1 7.3707 0.4346 -0.4719 33 1 7.0360 -0.6237 -1.8734 34 1 4.3772 0.0630 -2.8084 35 1 3.7804 1.3581 -1.7292 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260256058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:12 Heat of formation + Delta-G solvation = -38.855121 kcal Electronic energy + Delta-G solvation = -18564.940241 eV Core-core repulsion = 15722.138164 eV Total energy + Delta-G solvation = -2842.802077 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.22738 -40.02318 -38.63942 -35.66280 -33.44779 -32.06438 -29.77916 -29.56176 -29.25380 -26.77276 -24.61338 -22.03260 -21.50459 -21.39866 -19.84629 -19.36705 -17.94669 -17.13833 -16.89791 -16.81328 -16.26614 -16.21212 -15.73090 -14.94801 -14.79266 -14.35275 -14.19296 -13.89563 -13.70605 -13.35962 -12.87843 -12.49329 -12.44516 -12.18071 -11.97277 -11.96075 -11.91217 -11.72819 -11.51837 -11.40087 -11.23533 -10.93924 -9.81351 -8.91561 -8.60896 -6.47408 0.83437 1.13764 1.26333 1.41131 1.60802 1.68964 2.15726 2.79892 2.93694 3.36991 3.73255 3.81008 3.89112 4.15251 4.23631 4.30763 4.38379 4.51646 4.55141 4.56181 4.65292 4.67896 4.81828 4.87021 4.97644 5.10049 5.13736 5.16723 5.23072 5.33677 5.35872 5.47300 5.50697 5.58658 5.71930 6.20614 6.48619 6.74755 6.97181 8.46083 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.010215 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.927265 B = 2740.486605 C = 3737.640861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.051 3.949 3 Si 0.936 3.064 4 H -0.245 1.245 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.477 4.477 8 H 0.051 0.949 9 C 0.001 3.999 10 C -0.288 4.288 11 C -0.097 4.097 12 O -0.158 6.158 13 C -0.105 4.105 14 C 0.011 3.989 15 C -0.118 4.118 16 C -0.114 4.114 17 C -0.114 4.114 18 C -0.117 4.117 19 C 0.156 3.844 20 O -0.363 6.363 21 C 0.102 3.898 22 H 0.282 0.718 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.854 -3.655 3.482 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.157 4.157 3 Si 0.761 3.239 4 H -0.170 1.170 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.511 4.511 8 H 0.070 0.930 9 C -0.001 4.001 10 C -0.291 4.291 11 C -0.148 4.148 12 O -0.057 6.057 13 C -0.154 4.154 14 C -0.007 4.007 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.155 4.155 19 C 0.080 3.920 20 O -0.282 6.282 21 C 0.027 3.973 22 H 0.092 0.908 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.107 0.893 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.941 -3.458 3.549 12.929 hybrid contribution -0.751 0.662 -0.339 1.057 sum 11.191 -2.797 3.211 11.973 Atomic orbital electron populations 1.69738 1.08243 1.29729 1.44877 1.26225 0.95154 1.02556 0.91716 0.86100 0.79551 0.78628 0.79589 1.17030 1.20940 1.18165 1.18261 0.88907 0.93758 1.50192 0.93044 1.18558 0.93177 0.95677 0.92703 1.23247 0.96221 1.06963 1.02618 1.23825 0.99160 0.97877 0.93974 1.83169 1.29287 1.49822 1.43403 1.23469 0.78671 1.09783 1.03441 1.20124 0.99015 0.91342 0.90247 1.22432 1.00415 0.98834 0.93868 1.22485 1.01565 0.93672 0.97419 1.22330 0.98933 1.00393 0.93494 1.22234 0.99700 0.94444 0.99081 1.21412 0.89703 0.87354 0.93549 1.89121 1.20382 1.37851 1.80830 1.21453 0.84701 0.95215 0.95960 0.90832 0.90375 0.92486 0.91960 0.90409 0.89738 0.89533 0.91662 0.91067 0.93167 0.85647 0.86715 0.89271 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.70 13.94 21.79 0.30 -52.40 16 2 C 0.05 2.90 5.51 85.17 0.47 3.37 16 3 Si 0.94 45.37 23.98 68.60 1.64 47.01 16 4 H -0.24 -10.89 5.93 99.48 0.59 -10.30 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.26 -12.93 5.96 99.48 0.59 -12.34 16 7 C -0.48 -27.90 9.36 23.40 0.22 -27.68 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 9 C 0.00 0.07 4.97 -20.08 -0.10 -0.03 16 10 C -0.29 -13.60 4.74 -18.51 -0.09 -13.68 16 11 C -0.10 -4.05 8.37 25.00 0.21 -3.84 16 12 O -0.16 -6.92 10.38 0.42 0.00 -6.91 16 13 C -0.10 -4.88 5.68 25.88 0.15 -4.73 16 14 C 0.01 0.44 3.33 -10.82 -0.04 0.40 16 15 C -0.12 -3.85 6.35 31.67 0.20 -3.65 16 16 C -0.11 -2.74 6.91 31.88 0.22 -2.52 16 17 C -0.11 -2.76 6.83 31.67 0.22 -2.55 16 18 C -0.12 -3.71 6.45 31.32 0.20 -3.51 16 19 C 0.16 4.79 7.65 71.45 0.55 5.34 16 20 O -0.36 -13.09 11.77 -148.98 -1.75 -14.85 16 21 C 0.10 4.19 7.02 71.26 0.50 4.69 16 22 H 0.28 15.26 8.30 -92.71 -0.77 14.50 16 23 H 0.08 3.40 7.61 -2.38 -0.02 3.38 16 24 H 0.06 1.94 7.73 -2.39 -0.02 1.93 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 1.71 7.67 -2.38 -0.02 1.70 16 32 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.08 3.48 3.59 -2.39 -0.01 3.47 16 Total: -1.00 -66.53 278.45 3.77 -62.76 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.86 Total: 12.77 kcal Atomic # 6 Polarization: -51.09 SS G_CDS: 2.71 Total: -48.39 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.30 Total: -52.40 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -1.75 Total: -21.76 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.64 Total: 47.01 kcal Total: -66.53 3.77 -62.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260256058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.910 kcal (2) G-P(sol) polarization free energy of solvation -66.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds