Wall clock time and date at job start Mon Mar 30 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 C 1.50696 * 109.47060 * 240.00149 * 2 1 3 5 5 H 1.07995 * 119.99765 * 238.43183 * 4 2 1 6 6 C 1.37878 * 120.00062 * 58.42422 * 4 2 1 7 7 N 1.31513 * 120.00000 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99987 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47052 * 60.00592 * 8 6 4 10 10 H 1.48505 * 109.46981 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47126 * 300.00536 * 8 6 4 12 12 C 1.50693 * 109.46979 * 120.00008 * 2 1 3 13 13 C 1.37749 * 119.47263 * 240.45486 * 12 2 1 14 14 C 1.38280 * 120.54480 * 179.97438 * 13 12 2 15 15 C 1.38068 * 119.29236 * 0.12788 * 14 13 12 16 16 C 1.38780 * 120.16084 * 359.97093 * 15 14 13 17 17 C 1.38929 * 121.14928 * 359.79437 * 16 15 14 18 18 C 1.50870 * 115.37382 * 180.37311 * 17 16 15 19 19 C 1.54129 * 110.54485 * 339.73027 * 18 17 16 20 20 S 1.77428 * 130.58064 * 179.80466 * 16 15 14 21 21 H 1.09004 * 109.46851 * 293.14357 * 1 2 3 22 22 H 1.08997 * 109.46924 * 53.13568 * 1 2 3 23 23 H 1.09000 * 109.47125 * 173.14036 * 1 2 3 24 24 H 1.09001 * 109.47217 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47206 * 299.99876 * 3 2 1 26 26 H 1.09004 * 109.46974 * 60.00249 * 3 2 1 27 27 H 0.96998 * 120.00290 * 180.02562 * 7 6 4 28 28 H 1.07997 * 119.72469 * 359.96986 * 13 12 2 29 29 H 1.08001 * 120.34928 * 180.09923 * 14 13 12 30 30 H 1.07992 * 119.92085 * 179.97438 * 15 14 13 31 31 H 1.09005 * 109.26544 * 219.43951 * 18 17 16 32 32 H 1.08998 * 109.26929 * 100.02752 * 18 17 16 33 33 H 1.09000 * 111.09692 * 270.20679 * 19 18 17 34 34 H 1.09002 * 111.12992 * 146.14020 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6740 -1.5734 -1.1315 6 6 1.6727 -0.2585 -2.4825 7 7 0.8917 0.7927 -2.6029 8 14 2.2959 -1.1387 -4.0077 9 1 1.8331 -2.5495 -3.9889 10 1 1.7701 -0.4608 -5.2199 11 1 3.7804 -1.1049 -4.0268 12 6 2.0324 -0.7104 1.2304 13 6 2.8158 -0.0278 2.1347 14 6 3.2882 -0.6578 3.2714 15 6 2.9688 -1.9828 3.4916 16 6 2.1811 -2.6711 2.5795 17 6 1.6958 -2.0491 1.4359 18 6 0.8466 -2.9160 0.5394 19 6 1.1130 -4.4080 0.8195 20 16 1.6137 -4.3522 2.5818 21 1 -0.3633 0.4039 0.9450 22 1 -0.3633 0.6165 -0.8222 23 1 -0.3633 -1.0203 -0.1227 24 1 3.1300 1.4426 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 0.6383 1.1103 -3.4836 28 1 3.0631 1.0079 1.9544 29 1 3.9009 -0.1191 3.9792 30 1 3.3326 -2.4849 4.3758 31 1 1.0837 -2.6974 -0.5018 32 1 -0.2059 -2.6982 0.7206 33 1 1.9213 -4.7864 0.1937 34 1 0.2076 -5.0004 0.6874 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260278507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:08 Heat of formation + Delta-G solvation = 17.548317 kcal Electronic energy + Delta-G solvation = -16399.512512 eV Core-core repulsion = 14001.909143 eV Total energy + Delta-G solvation = -2397.603370 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.25232 -35.31970 -34.03352 -31.67910 -29.12533 -28.33769 -26.08963 -25.28262 -23.34762 -22.40977 -20.37230 -19.24978 -16.89294 -15.83279 -15.14417 -14.87228 -14.67103 -14.54830 -13.92521 -13.22062 -12.95372 -12.41529 -12.10684 -11.88288 -11.70479 -11.55277 -11.31141 -11.05879 -10.91656 -10.80782 -10.67398 -10.45005 -10.21046 -9.78841 -9.57736 -9.27259 -9.09968 -8.88253 -8.42086 -7.76003 -6.98267 -6.06014 -4.15545 1.77535 2.01946 2.08073 2.67465 3.24021 3.29998 3.32968 4.26798 4.40050 5.06851 5.18793 5.22531 5.41195 5.46580 5.62872 5.86231 5.98104 6.14045 6.21143 6.35633 6.55434 6.66843 6.73132 6.80230 6.84977 6.93520 6.94666 7.07475 7.26962 7.32196 7.55431 7.59801 7.70024 7.99533 8.10540 8.35065 8.83160 9.48461 10.95030 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.023002 B = 0.009360 C = 0.007572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.987273 B = 2990.821281 C = 3696.734940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.094 3.906 3 C -0.133 4.133 4 C -0.501 4.501 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.007 4.007 13 C -0.132 4.132 14 C -0.113 4.113 15 C -0.115 4.115 16 C -0.085 4.085 17 C -0.083 4.083 18 C -0.095 4.095 19 C -0.077 4.077 20 S -0.191 6.191 21 H 0.006 0.994 22 H 0.085 0.915 23 H 0.036 0.964 24 H 0.029 0.971 25 H 0.083 0.917 26 H 0.013 0.987 27 H 0.261 0.739 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 -4.530 6.628 8.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.094 3.906 3 C -0.190 4.190 4 C -0.539 4.539 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.716 3.284 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.009 4.009 13 C -0.152 4.152 14 C -0.133 4.133 15 C -0.138 4.138 16 C -0.197 4.197 17 C -0.088 4.088 18 C -0.132 4.132 19 C -0.225 4.225 20 S 0.049 5.951 21 H 0.026 0.974 22 H 0.104 0.896 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.102 0.898 26 H 0.032 0.968 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.456 -5.422 7.346 9.142 hybrid contribution 0.517 0.467 -1.673 1.812 sum 0.974 -4.956 5.673 7.595 Atomic orbital electron populations 1.21889 0.96846 1.00736 0.99237 1.17278 0.92683 0.91952 0.88692 1.21895 0.98534 0.98241 1.00358 1.20915 1.30211 1.13299 0.89477 0.92556 1.24892 0.94863 0.94936 0.98663 1.69816 1.35178 1.23654 1.23405 0.86715 0.79326 0.79851 0.82514 1.20229 1.21258 1.20299 1.20410 0.92845 0.91795 0.95828 1.21131 0.99199 1.00655 0.94204 1.20961 1.00428 0.93995 0.97895 1.20126 1.00069 0.94648 0.98973 1.21901 1.03007 0.95640 0.99111 1.20561 0.98929 0.94999 0.94359 1.21148 0.99735 0.88860 1.03472 1.24339 1.04516 1.00657 0.93003 1.85595 1.79234 1.13617 1.16609 0.97450 0.89604 0.94526 0.95155 0.89825 0.96821 0.92863 0.85524 0.86264 0.86867 0.85985 0.89740 0.88941 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 7.80 37.16 0.29 -2.66 16 2 C 0.09 2.17 0.48 -156.81 -0.08 2.10 16 3 C -0.13 -3.01 6.91 37.16 0.26 -2.75 16 4 C -0.50 -12.50 5.86 -34.44 -0.20 -12.71 16 5 H 0.06 1.44 7.10 -52.49 -0.37 1.07 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -22.93 9.44 55.43 0.52 -22.41 16 8 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 C -0.01 -0.15 4.74 -104.31 -0.49 -0.64 16 13 C -0.13 -2.54 8.92 -39.74 -0.35 -2.89 16 14 C -0.11 -1.90 10.08 -39.63 -0.40 -2.30 16 15 C -0.11 -1.99 10.05 -39.44 -0.40 -2.38 16 16 C -0.08 -1.60 6.48 -39.12 -0.25 -1.85 16 17 C -0.08 -1.68 5.46 -103.79 -0.57 -2.25 16 18 C -0.09 -1.74 4.37 -27.21 -0.12 -1.86 16 19 C -0.08 -1.19 7.60 37.75 0.29 -0.90 16 20 S -0.19 -3.19 23.08 -107.50 -2.48 -5.67 16 21 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 22 H 0.09 2.12 6.18 -51.93 -0.32 1.80 16 23 H 0.04 0.80 5.31 -51.93 -0.28 0.52 16 24 H 0.03 0.66 7.50 -51.93 -0.39 0.27 16 25 H 0.08 2.07 6.20 -51.93 -0.32 1.75 16 26 H 0.01 0.27 7.46 -51.93 -0.39 -0.12 16 27 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.13 2.30 5.78 -52.49 -0.30 2.00 16 29 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.12 2.48 5.52 -51.93 -0.29 2.19 16 32 H 0.08 1.51 7.03 -51.93 -0.37 1.14 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 274.18 15.07 4.13 4.13 Total: -1.00 -26.03 274.18 -9.24 -35.26 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.27 Total: 3.13 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: -2.12 Total: -29.47 kcal Atomic # 7 Polarization: -22.93 SS G_CDS: 0.52 Total: -22.41 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: -3.19 SS G_CDS: -2.48 Total: -5.67 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -26.03 -9.24 -35.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.811 kcal (2) G-P(sol) polarization free energy of solvation -26.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds