Wall clock time and date at job start Mon Mar 30 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46944 * 2 1 4 4 C 1.50696 * 109.47060 * 240.00149 * 2 1 3 5 5 H 1.07995 * 119.99765 * 238.43183 * 4 2 1 6 6 C 1.37878 * 120.00062 * 58.42422 * 4 2 1 7 7 N 1.31513 * 120.00000 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99987 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47052 * 60.00592 * 8 6 4 10 10 H 1.48505 * 109.46981 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47126 * 300.00536 * 8 6 4 12 12 C 1.50693 * 109.46979 * 120.00008 * 2 1 3 13 13 C 1.37749 * 119.47263 * 240.45486 * 12 2 1 14 14 C 1.38280 * 120.54480 * 179.97438 * 13 12 2 15 15 C 1.38068 * 119.29236 * 0.12788 * 14 13 12 16 16 C 1.38780 * 120.16084 * 359.97093 * 15 14 13 17 17 C 1.38929 * 121.14928 * 359.79437 * 16 15 14 18 18 C 1.50870 * 115.37382 * 180.37311 * 17 16 15 19 19 C 1.54129 * 110.54485 * 339.73027 * 18 17 16 20 20 S 1.77428 * 130.58064 * 179.80466 * 16 15 14 21 21 H 1.09004 * 109.46851 * 293.14357 * 1 2 3 22 22 H 1.08997 * 109.46924 * 53.13568 * 1 2 3 23 23 H 1.09000 * 109.47125 * 173.14036 * 1 2 3 24 24 H 1.09001 * 109.47217 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47206 * 299.99876 * 3 2 1 26 26 H 1.09004 * 109.46974 * 60.00249 * 3 2 1 27 27 H 0.96998 * 120.00290 * 180.02562 * 7 6 4 28 28 H 1.07997 * 119.72469 * 359.96986 * 13 12 2 29 29 H 1.08001 * 120.34928 * 180.09923 * 14 13 12 30 30 H 1.07992 * 119.92085 * 179.97438 * 15 14 13 31 31 H 1.09005 * 109.26544 * 219.43951 * 18 17 16 32 32 H 1.08998 * 109.26929 * 100.02752 * 18 17 16 33 33 H 1.09000 * 111.09692 * 270.20679 * 19 18 17 34 34 H 1.09002 * 111.12992 * 146.14020 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6740 -1.5734 -1.1315 6 6 1.6727 -0.2585 -2.4825 7 7 0.8917 0.7927 -2.6029 8 14 2.2959 -1.1387 -4.0077 9 1 1.8331 -2.5495 -3.9889 10 1 1.7701 -0.4608 -5.2199 11 1 3.7804 -1.1049 -4.0268 12 6 2.0324 -0.7104 1.2304 13 6 2.8158 -0.0278 2.1347 14 6 3.2882 -0.6578 3.2714 15 6 2.9688 -1.9828 3.4916 16 6 2.1811 -2.6711 2.5795 17 6 1.6958 -2.0491 1.4359 18 6 0.8466 -2.9160 0.5394 19 6 1.1130 -4.4080 0.8195 20 16 1.6137 -4.3522 2.5818 21 1 -0.3633 0.4039 0.9450 22 1 -0.3633 0.6165 -0.8222 23 1 -0.3633 -1.0203 -0.1227 24 1 3.1300 1.4426 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 0.6383 1.1103 -3.4836 28 1 3.0631 1.0079 1.9544 29 1 3.9009 -0.1191 3.9792 30 1 3.3326 -2.4849 4.3758 31 1 1.0837 -2.6974 -0.5018 32 1 -0.2059 -2.6982 0.7206 33 1 1.9213 -4.7864 0.1937 34 1 0.2076 -5.0004 0.6874 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260278507.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:07 Heat of formation + Delta-G solvation = 6.676434 kcal Electronic energy + Delta-G solvation = -16399.983952 eV Core-core repulsion = 14001.909143 eV Total energy + Delta-G solvation = -2398.074810 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73738 -37.02966 -35.41095 -33.51495 -30.54439 -29.84266 -27.85229 -27.21794 -24.74674 -23.95007 -21.79316 -20.92225 -18.51299 -17.53942 -16.67025 -16.41898 -16.21294 -15.89826 -15.40295 -14.86070 -14.65458 -13.85249 -13.62339 -13.40281 -13.31011 -13.12646 -12.90229 -12.79601 -12.59285 -12.49422 -12.28436 -12.21926 -11.97222 -11.45156 -11.15650 -10.89015 -10.81148 -10.40767 -10.33391 -9.26916 -8.30983 -7.98712 -6.12660 0.36422 0.59698 0.75147 1.34261 1.42698 1.45671 1.50706 2.45275 2.89500 3.23983 3.71526 3.94549 4.11327 4.14440 4.28269 4.53254 4.60891 4.73782 4.76235 4.86577 4.91361 4.99190 5.04294 5.12278 5.27407 5.32218 5.43670 5.48003 5.58535 5.61564 5.70571 5.84260 6.10898 6.20324 6.28193 6.46498 6.89759 7.52599 9.00118 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.023002 B = 0.009360 C = 0.007572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.987273 B = 2990.821281 C = 3696.734940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.090 3.910 3 C -0.124 4.124 4 C -0.502 4.502 5 H 0.045 0.955 6 C 0.029 3.971 7 N -0.902 5.902 8 Si 0.937 3.063 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.281 1.281 12 C -0.036 4.036 13 C -0.145 4.145 14 C -0.102 4.102 15 C -0.114 4.114 16 C -0.102 4.102 17 C -0.105 4.105 18 C -0.093 4.093 19 C -0.071 4.071 20 S -0.176 6.176 21 H 0.013 0.987 22 H 0.062 0.938 23 H 0.037 0.963 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.259 0.741 28 H 0.131 0.869 29 H 0.158 0.842 30 H 0.141 0.859 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -5.710 7.990 9.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 C -0.181 4.181 4 C -0.540 4.540 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.541 5.541 8 Si 0.764 3.236 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.206 1.206 12 C -0.038 4.038 13 C -0.165 4.165 14 C -0.122 4.122 15 C -0.138 4.138 16 C -0.214 4.214 17 C -0.110 4.110 18 C -0.130 4.130 19 C -0.219 4.219 20 S 0.064 5.936 21 H 0.032 0.968 22 H 0.081 0.919 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.149 0.851 29 H 0.175 0.825 30 H 0.158 0.842 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.118 0.882 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.102 -6.610 8.710 10.990 hybrid contribution 0.334 0.820 -2.023 2.208 sum 1.436 -5.791 6.687 8.961 Atomic orbital electron populations 1.21746 0.97152 1.00300 0.98503 1.17229 0.92530 0.92006 0.89267 1.21763 0.98276 0.98236 0.99848 1.21047 1.29604 1.12818 0.90533 0.93724 1.25442 0.95277 0.95588 1.00748 1.69937 1.36072 1.24566 1.23513 0.85943 0.78456 0.79259 0.79965 1.19563 1.21324 1.20647 1.20360 0.94805 0.92673 0.95934 1.21297 0.99244 1.01021 0.94901 1.21340 0.99568 0.93945 0.97335 1.20557 0.98983 0.94899 0.99326 1.22248 1.03150 0.96963 0.99010 1.20752 0.99775 0.94990 0.95469 1.21060 0.99446 0.90765 1.01742 1.24416 1.06194 0.98904 0.92380 1.85495 1.78997 1.11889 1.17246 0.96754 0.91922 0.94380 0.95310 0.92317 0.95186 0.93167 0.85148 0.82463 0.84158 0.88450 0.89883 0.88245 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 7.80 71.98 0.56 -4.97 16 2 C 0.09 4.19 0.48 -53.67 -0.03 4.17 16 3 C -0.12 -5.66 6.91 71.98 0.50 -5.16 16 4 C -0.50 -25.41 5.86 25.60 0.15 -25.26 16 5 H 0.04 2.32 7.10 -2.91 -0.02 2.30 16 6 C 0.03 1.49 5.15 84.65 0.44 1.92 16 7 N -0.90 -47.86 9.44 21.45 0.20 -47.65 16 8 Si 0.94 41.46 29.54 68.60 2.03 43.48 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C -0.04 -1.51 4.74 -19.66 -0.09 -1.61 16 13 C -0.15 -5.35 8.92 22.16 0.20 -5.15 16 14 C -0.10 -3.13 10.08 22.24 0.22 -2.91 16 15 C -0.11 -3.61 10.05 22.36 0.22 -3.39 16 16 C -0.10 -3.64 6.48 22.57 0.15 -3.49 16 17 C -0.10 -4.15 5.46 -19.33 -0.11 -4.25 16 18 C -0.09 -3.35 4.37 30.28 0.13 -3.22 16 19 C -0.07 -2.05 7.60 72.36 0.55 -1.50 16 20 S -0.18 -5.48 23.08 -56.49 -1.30 -6.79 16 21 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 22 H 0.06 3.17 6.18 -2.39 -0.01 3.16 16 23 H 0.04 1.69 5.31 -2.39 -0.01 1.68 16 24 H 0.03 1.27 7.50 -2.39 -0.02 1.25 16 25 H 0.06 2.97 6.20 -2.39 -0.01 2.95 16 26 H 0.03 1.22 7.46 -2.39 -0.02 1.20 16 27 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 28 H 0.13 4.58 5.78 -2.91 -0.02 4.57 16 29 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.10 4.00 5.52 -2.38 -0.01 3.99 16 32 H 0.08 2.95 7.03 -2.39 -0.02 2.93 16 33 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -55.28 274.18 4.92 -50.36 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.10 Total: 15.42 kcal Atomic # 6 Polarization: -57.72 SS G_CDS: 2.90 Total: -54.83 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.20 Total: -47.65 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -1.30 Total: -6.79 kcal Total: -55.28 4.92 -50.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260278507.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.038 kcal (2) G-P(sol) polarization free energy of solvation -55.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds