Wall clock time and date at job start Mon Mar 30 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47251 * 239.99681 * 2 1 3 5 5 H 1.08003 * 120.00099 * 122.58039 * 4 2 1 6 6 C 1.37882 * 120.00100 * 302.57057 * 4 2 1 7 7 N 1.31516 * 119.99919 * 184.73339 * 6 4 2 8 8 Si 1.86798 * 119.99980 * 4.73562 * 6 4 2 9 9 H 1.48501 * 109.47132 * 92.80936 * 8 6 4 10 10 H 1.48502 * 109.47043 * 212.80760 * 8 6 4 11 11 H 1.48502 * 109.46964 * 332.81010 * 8 6 4 12 12 C 1.50704 * 109.46780 * 119.99564 * 2 1 3 13 13 C 1.37856 * 119.99944 * 126.06302 * 12 2 1 14 14 C 1.38910 * 120.66570 * 180.27444 * 13 12 2 15 15 F 1.35095 * 119.88898 * 179.97438 * 14 13 12 16 16 C 1.37956 * 120.21948 * 359.97438 * 14 13 12 17 17 C 1.39392 * 119.58183 * 359.97438 * 16 14 13 18 18 C 1.46791 * 134.31957 * 180.02562 * 17 16 14 19 19 C 1.33991 * 106.19612 * 180.02562 * 18 17 16 20 20 O 1.34447 * 110.15658 * 359.97438 * 19 18 17 21 21 C 1.34876 * 110.88991 * 359.97438 * 20 19 18 22 22 H 1.08993 * 109.47753 * 305.90901 * 1 2 3 23 23 H 1.09003 * 109.47035 * 65.91421 * 1 2 3 24 24 H 1.09002 * 109.46935 * 185.90746 * 1 2 3 25 25 H 1.08995 * 109.46969 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46646 * 299.99702 * 3 2 1 27 27 H 1.08994 * 109.47109 * 59.99307 * 3 2 1 28 28 H 0.96997 * 120.00013 * 180.02562 * 7 6 4 29 29 H 1.07999 * 119.66888 * 0.24639 * 13 12 2 30 30 H 1.08005 * 120.20791 * 180.02562 * 16 14 13 31 31 H 1.08007 * 126.90233 * 0.02562 * 18 17 16 32 32 H 1.07997 * 124.92668 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6872 -0.1986 -1.9200 6 6 1.6561 -2.0141 -1.4756 7 7 2.1671 -2.6647 -2.4980 8 14 0.4206 -2.8560 -0.3559 9 1 -0.9469 -2.6821 -0.9082 10 1 0.7385 -4.3040 -0.2681 11 1 0.4879 -2.2514 0.9988 12 6 2.0322 -0.7103 1.2306 13 6 2.9246 -1.7540 1.1081 14 6 3.3921 -2.4221 2.2326 15 9 4.2660 -3.4430 2.0943 16 6 2.9670 -2.0465 3.4902 17 6 2.0657 -0.9919 3.6254 18 6 1.4163 -0.3379 4.7679 19 6 0.6435 0.6292 4.2553 20 8 0.7467 0.6430 2.9148 21 6 1.5938 -0.3158 2.4878 22 1 -0.3634 0.6027 0.8323 23 1 -0.3633 0.4194 -0.9382 24 1 -0.3633 -1.0222 0.1058 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.9022 -3.5816 -2.6708 29 1 3.2633 -2.0555 0.1279 30 1 3.3310 -2.5659 4.3644 31 1 1.5371 -0.5864 5.8121 32 1 0.0269 1.3004 4.8347 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260281477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:10 Heat of formation + Delta-G solvation = -5.106293 kcal Electronic energy + Delta-G solvation = -18612.528977 eV Core-core repulsion = 15647.730054 eV Total energy + Delta-G solvation = -2964.798923 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.32186 -42.07228 -38.00345 -35.36718 -32.15984 -31.61104 -28.91695 -28.83541 -26.56836 -25.13944 -23.09612 -21.73365 -21.09161 -19.24526 -17.35597 -17.12426 -16.48249 -15.79674 -15.67582 -15.05413 -14.88161 -14.50507 -13.70342 -13.01264 -12.96597 -12.86218 -12.59297 -12.47542 -12.18596 -12.06046 -11.60432 -11.17729 -11.17045 -10.69434 -10.35562 -10.09058 -9.96003 -9.68634 -9.14351 -9.00592 -8.59898 -7.93474 -7.51338 -6.20540 -4.21256 1.31400 1.73278 2.68762 3.19987 3.25383 3.37342 3.40949 4.11193 4.32399 4.53603 4.91222 5.05154 5.14614 5.43479 5.49339 5.68894 5.88968 6.01394 6.07208 6.20840 6.22944 6.46704 6.51089 6.53824 6.64395 6.71881 6.76592 6.81129 6.93362 7.15893 7.25213 7.36110 7.62811 7.70788 8.41252 8.84759 9.40943 10.90351 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.012728 C = 0.009750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.352373 B = 2199.324784 C = 2871.032732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 C -0.117 4.117 4 C -0.513 4.513 5 H 0.082 0.918 6 C 0.080 3.920 7 N -0.889 5.889 8 Si 0.866 3.134 9 H -0.284 1.284 10 H -0.297 1.297 11 H -0.247 1.247 12 C 0.007 3.993 13 C -0.125 4.125 14 C 0.082 3.918 15 F -0.143 7.143 16 C -0.141 4.141 17 C -0.118 4.118 18 C -0.218 4.218 19 C 0.001 3.999 20 O -0.186 6.186 21 C 0.040 3.960 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.267 0.733 29 H 0.175 0.825 30 H 0.128 0.872 31 H 0.152 0.848 32 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.939 4.598 12.559 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.064 3.936 3 C -0.175 4.175 4 C -0.551 4.551 5 H 0.100 0.900 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.696 3.304 9 H -0.211 1.211 10 H -0.225 1.225 11 H -0.172 1.172 12 C 0.006 3.994 13 C -0.143 4.143 14 C 0.063 3.937 15 F -0.122 7.122 16 C -0.160 4.160 17 C -0.119 4.119 18 C -0.237 4.237 19 C -0.065 4.065 20 O -0.087 6.087 21 C -0.007 4.007 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.192 0.808 30 H 0.146 0.854 31 H 0.170 0.830 32 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.021 4.562 12.245 13.223 hybrid contribution -0.568 -1.016 0.809 1.418 sum -2.589 3.545 13.054 13.773 Atomic orbital electron populations 1.22260 0.97270 0.99815 1.00622 1.17666 0.92125 0.93064 0.90775 1.21642 1.00366 0.95571 0.99872 1.20859 1.30794 0.97398 1.06033 0.89975 1.25035 0.95338 0.97147 0.94846 1.69893 1.42532 1.11569 1.28508 0.87425 0.81799 0.78085 0.83054 1.21110 1.22494 1.17161 1.19506 0.93935 0.94385 0.91552 1.21550 0.97795 0.95185 0.99746 1.17600 0.93181 0.88819 0.94145 1.91452 1.66914 1.57054 1.96733 1.20115 1.00766 0.99092 0.96017 1.19564 1.00703 0.98568 0.93032 1.22345 1.02805 0.99931 0.98601 1.23891 1.01036 1.00327 0.81226 1.84060 1.54704 1.48191 1.21775 1.19660 0.94854 0.91318 0.94836 0.94052 0.92180 0.94356 0.93353 0.92729 0.94572 0.92326 0.80813 0.85362 0.83040 0.78143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 7.41 37.16 0.28 -2.82 16 2 C 0.06 1.46 0.59 -156.81 -0.09 1.37 16 3 C -0.12 -2.33 8.29 37.16 0.31 -2.02 16 4 C -0.51 -13.51 7.48 -34.44 -0.26 -13.77 16 5 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 6 C 0.08 2.18 4.06 -17.82 -0.07 2.11 16 7 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 8 Si 0.87 21.71 22.04 -169.99 -3.75 17.96 16 9 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 11 H -0.25 -5.97 4.44 56.52 0.25 -5.72 16 12 C 0.01 0.16 2.55 -104.52 -0.27 -0.11 16 13 C -0.12 -2.83 6.61 -39.47 -0.26 -3.09 16 14 C 0.08 1.68 7.29 -39.44 -0.29 1.40 16 15 F -0.14 -2.88 17.26 2.25 0.04 -2.85 16 16 C -0.14 -2.57 10.07 -39.26 -0.40 -2.97 16 17 C -0.12 -2.16 6.39 -105.16 -0.67 -2.83 16 18 C -0.22 -3.09 11.14 -37.62 -0.42 -3.51 16 19 C 0.00 0.01 11.96 29.24 0.35 0.36 16 20 O -0.19 -3.29 8.74 3.72 0.03 -3.26 16 21 C 0.04 0.81 6.14 -38.50 -0.24 0.57 16 22 H 0.04 0.81 6.71 -51.93 -0.35 0.46 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 24 H 0.04 0.88 2.82 -51.93 -0.15 0.73 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.04 0.65 7.41 -51.93 -0.38 0.27 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.17 4.34 5.43 -52.49 -0.28 4.06 16 30 H 0.13 1.95 8.06 -52.48 -0.42 1.53 16 31 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 257.91 15.07 3.89 3.89 Total: -1.00 -29.51 257.91 -4.45 -33.96 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -3.41 Total: 0.82 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -2.03 Total: -25.31 kcal Atomic # 7 Polarization: -25.99 SS G_CDS: 0.77 Total: -25.22 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: 0.03 Total: -3.26 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -3.75 Total: 17.96 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.51 -4.45 -33.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.855 kcal (2) G-P(sol) polarization free energy of solvation -29.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds