Wall clock time and date at job start Mon Mar 30 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47251 * 239.99681 * 2 1 3 5 5 H 1.08003 * 120.00099 * 122.58039 * 4 2 1 6 6 C 1.37882 * 120.00100 * 302.57057 * 4 2 1 7 7 N 1.31516 * 119.99919 * 184.73339 * 6 4 2 8 8 Si 1.86798 * 119.99980 * 4.73562 * 6 4 2 9 9 H 1.48501 * 109.47132 * 92.80936 * 8 6 4 10 10 H 1.48502 * 109.47043 * 212.80760 * 8 6 4 11 11 H 1.48502 * 109.46964 * 332.81010 * 8 6 4 12 12 C 1.50704 * 109.46780 * 119.99564 * 2 1 3 13 13 C 1.37856 * 119.99944 * 126.06302 * 12 2 1 14 14 C 1.38910 * 120.66570 * 180.27444 * 13 12 2 15 15 F 1.35095 * 119.88898 * 179.97438 * 14 13 12 16 16 C 1.37956 * 120.21948 * 359.97438 * 14 13 12 17 17 C 1.39392 * 119.58183 * 359.97438 * 16 14 13 18 18 C 1.46791 * 134.31957 * 180.02562 * 17 16 14 19 19 C 1.33991 * 106.19612 * 180.02562 * 18 17 16 20 20 O 1.34447 * 110.15658 * 359.97438 * 19 18 17 21 21 C 1.34876 * 110.88991 * 359.97438 * 20 19 18 22 22 H 1.08993 * 109.47753 * 305.90901 * 1 2 3 23 23 H 1.09003 * 109.47035 * 65.91421 * 1 2 3 24 24 H 1.09002 * 109.46935 * 185.90746 * 1 2 3 25 25 H 1.08995 * 109.46969 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46646 * 299.99702 * 3 2 1 27 27 H 1.08994 * 109.47109 * 59.99307 * 3 2 1 28 28 H 0.96997 * 120.00013 * 180.02562 * 7 6 4 29 29 H 1.07999 * 119.66888 * 0.24639 * 13 12 2 30 30 H 1.08005 * 120.20791 * 180.02562 * 16 14 13 31 31 H 1.08007 * 126.90233 * 0.02562 * 18 17 16 32 32 H 1.07997 * 124.92668 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6872 -0.1986 -1.9200 6 6 1.6561 -2.0141 -1.4756 7 7 2.1671 -2.6647 -2.4980 8 14 0.4206 -2.8560 -0.3559 9 1 -0.9469 -2.6821 -0.9082 10 1 0.7385 -4.3040 -0.2681 11 1 0.4879 -2.2514 0.9988 12 6 2.0322 -0.7103 1.2306 13 6 2.9246 -1.7540 1.1081 14 6 3.3921 -2.4221 2.2326 15 9 4.2660 -3.4430 2.0943 16 6 2.9670 -2.0465 3.4902 17 6 2.0657 -0.9919 3.6254 18 6 1.4163 -0.3379 4.7679 19 6 0.6435 0.6292 4.2553 20 8 0.7467 0.6430 2.9148 21 6 1.5938 -0.3158 2.4878 22 1 -0.3634 0.6027 0.8323 23 1 -0.3633 0.4194 -0.9382 24 1 -0.3633 -1.0222 0.1058 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8899 28 1 1.9022 -3.5816 -2.6708 29 1 3.2633 -2.0555 0.1279 30 1 3.3310 -2.5659 4.3644 31 1 1.5371 -0.5864 5.8121 32 1 0.0269 1.3004 4.8347 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260281477.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:10 Heat of formation + Delta-G solvation = -23.430007 kcal Electronic energy + Delta-G solvation = -18613.323553 eV Core-core repulsion = 15647.730054 eV Total energy + Delta-G solvation = -2965.593499 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.88924 -43.38910 -39.60276 -36.97245 -34.12956 -33.02503 -30.38488 -30.28051 -28.25295 -27.12578 -24.56686 -23.21334 -22.40758 -20.94370 -19.03785 -18.56794 -18.02509 -17.29573 -17.22656 -16.84227 -16.43825 -15.97690 -15.36079 -14.95719 -14.65755 -14.34515 -14.17504 -13.96589 -13.71815 -13.47227 -13.27116 -12.85192 -12.73359 -12.38977 -12.17573 -12.05639 -11.63137 -11.28051 -11.03976 -10.70947 -10.59460 -9.40130 -8.97108 -8.36183 -6.37401 -0.08187 0.19779 1.23003 1.32658 1.36392 1.53220 1.95058 2.25074 2.58418 2.97697 3.16377 3.58451 3.79709 4.08997 4.18381 4.33562 4.41944 4.49662 4.51627 4.60563 4.82215 4.88187 4.96250 5.00389 5.06522 5.11539 5.22551 5.28764 5.47710 5.55161 5.62031 5.69440 5.85305 6.25139 6.30688 6.69936 7.27607 8.78721 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.012728 C = 0.009750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.352373 B = 2199.324784 C = 2871.032732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.058 3.942 3 C -0.111 4.111 4 C -0.504 4.504 5 H 0.046 0.954 6 C 0.040 3.960 7 N -0.936 5.936 8 Si 0.914 3.086 9 H -0.280 1.280 10 H -0.312 1.312 11 H -0.229 1.229 12 C -0.009 4.009 13 C -0.153 4.153 14 C 0.063 3.937 15 F -0.148 7.148 16 C -0.126 4.126 17 C -0.123 4.123 18 C -0.219 4.219 19 C 0.019 3.981 20 O -0.198 6.198 21 C 0.024 3.976 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.025 0.975 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.265 0.735 29 H 0.137 0.863 30 H 0.163 0.837 31 H 0.191 0.809 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 6.115 16.644 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.057 3.943 3 C -0.168 4.168 4 C -0.541 4.541 5 H 0.064 0.936 6 C -0.159 4.159 7 N -0.576 5.576 8 Si 0.744 3.256 9 H -0.207 1.207 10 H -0.241 1.241 11 H -0.153 1.153 12 C -0.010 4.010 13 C -0.171 4.171 14 C 0.044 3.956 15 F -0.127 7.127 16 C -0.145 4.145 17 C -0.124 4.124 18 C -0.237 4.237 19 C -0.045 4.045 20 O -0.099 6.099 21 C -0.023 4.023 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.154 0.846 30 H 0.181 0.819 31 H 0.208 0.792 32 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -3.726 6.108 16.348 17.845 hybrid contribution -0.002 -1.358 -0.364 1.406 sum -3.727 4.750 15.984 17.086 Atomic orbital electron populations 1.22185 0.96164 0.99440 1.01829 1.17690 0.93005 0.94148 0.89429 1.21574 0.99892 0.94185 1.01166 1.21061 1.29141 0.97243 1.06693 0.93564 1.25556 0.96814 0.97802 0.95705 1.70011 1.44800 1.11925 1.30840 0.86650 0.79872 0.76290 0.82768 1.20738 1.24069 1.15260 1.19215 0.94787 0.94690 0.92294 1.21238 0.99825 0.97082 0.98995 1.17705 0.93966 0.89192 0.94745 1.91430 1.67142 1.57245 1.96838 1.20440 0.99599 0.98656 0.95815 1.20091 1.00009 0.97930 0.94369 1.22779 1.02209 0.99456 0.99276 1.25050 1.00036 1.00084 0.79368 1.84059 1.54119 1.47454 1.24309 1.19512 0.95819 0.92508 0.94453 0.91388 0.92102 0.95655 0.94135 0.92314 0.92258 0.92583 0.84568 0.81926 0.79169 0.72607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 7.41 71.98 0.53 -5.29 16 2 C 0.06 2.62 0.59 -53.67 -0.03 2.59 16 3 C -0.11 -4.33 8.29 71.98 0.60 -3.73 16 4 C -0.50 -27.66 7.48 25.60 0.19 -27.47 16 5 H 0.05 2.80 7.99 -2.91 -0.02 2.77 16 6 C 0.04 2.29 4.06 84.66 0.34 2.63 16 7 N -0.94 -57.85 13.96 21.45 0.30 -57.55 16 8 Si 0.91 46.04 22.04 68.60 1.51 47.55 16 9 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 10 H -0.31 -16.23 7.11 99.48 0.71 -15.52 16 11 H -0.23 -10.81 4.44 99.48 0.44 -10.37 16 12 C -0.01 -0.39 2.55 -19.80 -0.05 -0.44 16 13 C -0.15 -7.10 6.61 22.34 0.15 -6.96 16 14 C 0.06 2.58 7.29 22.36 0.16 2.75 16 15 F -0.15 -6.04 17.26 44.97 0.78 -5.27 16 16 C -0.13 -4.26 10.07 22.48 0.23 -4.04 16 17 C -0.12 -4.01 6.39 -20.21 -0.13 -4.14 16 18 C -0.22 -4.84 11.14 23.54 0.26 -4.58 16 19 C 0.02 0.38 11.96 66.85 0.80 1.18 16 20 O -0.20 -6.06 8.74 -9.59 -0.08 -6.14 16 21 C 0.02 0.90 6.14 22.97 0.14 1.05 16 22 H 0.07 2.45 6.71 -2.39 -0.02 2.43 16 23 H 0.06 2.47 8.14 -2.39 -0.02 2.46 16 24 H 0.02 1.11 2.82 -2.39 -0.01 1.11 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.06 2.01 7.41 -2.39 -0.02 1.99 16 28 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.14 7.29 5.43 -2.91 -0.02 7.27 16 30 H 0.16 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.19 2.70 8.06 -2.91 -0.02 2.67 16 32 H 0.26 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -67.80 257.91 6.57 -61.22 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 0.88 Total: 6.64 kcal Atomic # 6 Polarization: -49.65 SS G_CDS: 3.19 Total: -46.46 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.30 Total: -57.55 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.08 Total: -6.14 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.78 Total: -5.27 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.51 Total: 47.55 kcal Total: -67.80 6.57 -61.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260281477.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.793 kcal (2) G-P(sol) polarization free energy of solvation -67.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds