Wall clock time and date at job start Mon Mar 30 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47197 * 89.99842 * 8 6 4 10 10 H 1.48495 * 109.47693 * 210.00055 * 8 6 4 11 11 H 1.48508 * 109.46868 * 330.00146 * 8 6 4 12 12 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 13 13 C 1.34330 * 125.02871 * 84.69280 * 12 2 1 14 14 C 1.46473 * 107.07911 * 179.89171 * 13 12 2 15 15 N 1.32983 * 133.70917 * 180.09684 * 14 13 12 16 16 C 1.31530 * 121.43606 * 180.29000 * 15 14 13 17 17 C 1.38904 * 121.24115 * 0.02562 * 16 15 14 18 18 F 1.35098 * 120.18938 * 180.02562 * 17 16 15 19 19 C 1.38471 * 119.61709 * 359.97438 * 17 16 15 20 20 C 1.39191 * 118.27873 * 0.02562 * 19 17 16 21 21 N 1.36706 * 125.03348 * 264.99891 * 12 2 1 22 22 C 1.46499 * 125.09595 * 359.93928 * 21 12 2 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 27 27 H 1.07994 * 126.45977 * 359.97438 * 13 12 2 28 28 H 1.08007 * 119.38273 * 179.97438 * 16 15 14 29 29 H 1.08000 * 120.86519 * 179.97438 * 19 17 16 30 30 H 1.09003 * 109.47168 * 89.99803 * 22 21 12 31 31 H 1.08993 * 109.47468 * 210.00391 * 22 21 12 32 32 H 1.09000 * 109.47115 * 330.00840 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4872 -0.1404 -5.1121 11 1 3.6308 -1.7567 -3.7119 12 6 2.0323 -0.7104 1.2305 13 6 2.1934 -2.0393 1.3418 14 6 2.6997 -2.2998 2.6913 15 7 3.0374 -3.4054 3.3486 16 6 3.4705 -3.3603 4.5897 17 6 3.5929 -2.1536 5.2667 18 9 4.0405 -2.1320 6.5412 19 6 3.2543 -0.9729 4.6274 20 6 2.7980 -1.0415 3.3142 21 7 2.3859 -0.0983 2.4006 22 6 2.3344 1.3452 2.6452 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7087 1.1612 -3.4844 27 1 1.9894 -2.7766 0.5794 28 1 3.7353 -4.2790 5.0923 29 1 3.3412 -0.0235 5.1348 30 1 1.3561 1.6111 3.0457 31 1 3.1076 1.6200 3.3625 32 1 2.5008 1.8784 1.7092 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260295461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:00 Heat of formation + Delta-G solvation = 17.716446 kcal Electronic energy + Delta-G solvation = -17499.053990 eV Core-core repulsion = 14567.537486 eV Total energy + Delta-G solvation = -2931.516504 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.76452 -41.23721 -37.77217 -34.41231 -32.57647 -31.23722 -30.82895 -27.95348 -26.04575 -25.22935 -23.54540 -22.07699 -21.24462 -19.14135 -17.46924 -16.72976 -16.58332 -15.86729 -15.69499 -15.12737 -14.93367 -14.66727 -14.03890 -13.46799 -13.05609 -12.92539 -12.61068 -12.42201 -12.09302 -11.95957 -11.69468 -11.31018 -11.00952 -10.83937 -10.61071 -10.27441 -9.94707 -9.71739 -9.21964 -9.10758 -8.52650 -7.89459 -7.35031 -6.16898 -4.23361 1.12880 1.51712 3.03370 3.18303 3.25614 3.32394 3.37527 4.12995 4.27984 4.33780 4.60119 4.82718 4.97627 5.14037 5.16521 5.27304 5.41808 5.52058 5.68348 5.82714 6.03163 6.36240 6.45109 6.57515 6.77392 6.88186 6.93319 7.03400 7.34161 7.57940 7.62732 7.73703 7.93098 8.19526 8.25716 8.79030 9.42788 10.89822 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.036581 B = 0.005778 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.247791 B = 4844.846516 C = 5317.993042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.095 3.905 3 H 0.040 0.960 4 C -0.512 4.512 5 H 0.067 0.933 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.155 3.845 13 C -0.196 4.196 14 C 0.090 3.910 15 N -0.426 5.426 16 C 0.056 3.944 17 C 0.041 3.959 18 F -0.138 7.138 19 C -0.122 4.122 20 C 0.063 3.937 21 N -0.480 5.480 22 C 0.077 3.923 23 H 0.008 0.992 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.263 0.737 27 H 0.157 0.843 28 H 0.161 0.839 29 H 0.136 0.864 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 -0.204 11.251 11.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.076 3.924 3 H 0.058 0.942 4 C -0.550 4.550 5 H 0.085 0.915 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.046 3.954 13 C -0.219 4.219 14 C -0.044 4.044 15 N -0.133 5.133 16 C -0.112 4.112 17 C 0.018 3.982 18 F -0.117 7.117 19 C -0.152 4.152 20 C -0.047 4.047 21 N -0.163 5.163 22 C -0.065 4.065 23 H 0.027 0.973 24 H 0.111 0.889 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.174 0.826 28 H 0.178 0.822 29 H 0.153 0.847 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.247 -0.529 10.693 10.939 hybrid contribution 0.510 0.538 -0.001 0.741 sum 2.756 0.009 10.692 11.041 Atomic orbital electron populations 1.21782 0.96413 1.00168 1.00533 1.17704 0.93217 0.95324 0.86123 0.94218 1.21086 1.31766 1.12942 0.89215 0.91479 1.24927 0.94804 0.94915 0.99126 1.69859 1.36421 1.22780 1.23837 0.86477 0.79481 0.79360 0.82101 1.20420 1.21214 1.19683 1.21762 0.94372 0.92401 0.86816 1.21287 1.11870 0.94935 0.93846 1.20364 1.01415 0.86635 0.95953 1.67139 1.09038 1.30280 1.06863 1.22548 1.01465 0.96139 0.91047 1.18190 1.04314 0.95042 0.80624 1.91460 1.87169 1.97323 1.35783 1.20188 1.03978 0.98231 0.92757 1.18776 1.03223 0.90949 0.91754 1.43937 1.55628 1.05911 1.10854 1.21951 1.02409 0.78357 1.03793 0.97322 0.88939 0.94518 0.92708 0.82580 0.82177 0.84656 0.91348 0.90788 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.95 37.16 0.33 -2.58 16 2 C 0.10 2.19 2.45 -92.92 -0.23 1.96 16 3 H 0.04 0.95 6.77 -51.93 -0.35 0.60 16 4 C -0.51 -13.03 8.21 -34.44 -0.28 -13.31 16 5 H 0.07 1.72 6.77 -52.48 -0.36 1.36 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -23.58 11.32 55.43 0.63 -22.95 16 8 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.15 3.22 5.77 -81.80 -0.47 2.75 16 13 C -0.20 -4.12 9.89 -37.65 -0.37 -4.50 16 14 C 0.09 1.79 7.51 -83.10 -0.62 1.17 16 15 N -0.43 -7.94 10.41 -9.79 -0.10 -8.04 16 16 C 0.06 0.87 11.15 -17.43 -0.19 0.67 16 17 C 0.04 0.61 7.33 -39.25 -0.29 0.32 16 18 F -0.14 -1.91 17.28 2.25 0.04 -1.87 16 19 C -0.12 -1.85 10.08 -39.14 -0.39 -2.25 16 20 C 0.06 1.13 6.81 -83.96 -0.57 0.56 16 21 N -0.48 -8.64 3.17 -117.18 -0.37 -9.01 16 22 C 0.08 1.05 10.81 59.85 0.65 1.70 16 23 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 24 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 27 H 0.16 3.29 7.58 -52.49 -0.40 2.90 16 28 H 0.16 1.93 8.06 -52.48 -0.42 1.51 16 29 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.09 1.32 6.81 -51.93 -0.35 0.96 16 LS Contribution 278.27 15.07 4.19 4.19 Total: -1.00 -27.61 278.27 -6.62 -34.24 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.44 Total: 0.12 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -2.54 Total: -11.95 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.15 Total: -40.00 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.61 -6.62 -34.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.952 kcal (2) G-P(sol) polarization free energy of solvation -27.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds