Wall clock time and date at job start Mon Mar 30 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47197 * 89.99842 * 8 6 4 10 10 H 1.48495 * 109.47693 * 210.00055 * 8 6 4 11 11 H 1.48508 * 109.46868 * 330.00146 * 8 6 4 12 12 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 13 13 C 1.34330 * 125.02871 * 84.69280 * 12 2 1 14 14 C 1.46473 * 107.07911 * 179.89171 * 13 12 2 15 15 N 1.32983 * 133.70917 * 180.09684 * 14 13 12 16 16 C 1.31530 * 121.43606 * 180.29000 * 15 14 13 17 17 C 1.38904 * 121.24115 * 0.02562 * 16 15 14 18 18 F 1.35098 * 120.18938 * 180.02562 * 17 16 15 19 19 C 1.38471 * 119.61709 * 359.97438 * 17 16 15 20 20 C 1.39191 * 118.27873 * 0.02562 * 19 17 16 21 21 N 1.36706 * 125.03348 * 264.99891 * 12 2 1 22 22 C 1.46499 * 125.09595 * 359.93928 * 21 12 2 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 27 27 H 1.07994 * 126.45977 * 359.97438 * 13 12 2 28 28 H 1.08007 * 119.38273 * 179.97438 * 16 15 14 29 29 H 1.08000 * 120.86519 * 179.97438 * 19 17 16 30 30 H 1.09003 * 109.47168 * 89.99803 * 22 21 12 31 31 H 1.08993 * 109.47468 * 210.00391 * 22 21 12 32 32 H 1.09000 * 109.47115 * 330.00840 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 1.3446 -2.1616 -4.4124 10 1 2.4872 -0.1404 -5.1121 11 1 3.6308 -1.7567 -3.7119 12 6 2.0323 -0.7104 1.2305 13 6 2.1934 -2.0393 1.3418 14 6 2.6997 -2.2998 2.6913 15 7 3.0374 -3.4054 3.3486 16 6 3.4705 -3.3603 4.5897 17 6 3.5929 -2.1536 5.2667 18 9 4.0405 -2.1320 6.5412 19 6 3.2543 -0.9729 4.6274 20 6 2.7980 -1.0415 3.3142 21 7 2.3859 -0.0983 2.4006 22 6 2.3344 1.3452 2.6452 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7087 1.1612 -3.4844 27 1 1.9894 -2.7766 0.5794 28 1 3.7353 -4.2790 5.0923 29 1 3.3412 -0.0235 5.1348 30 1 1.3561 1.6111 3.0457 31 1 3.1076 1.6200 3.3625 32 1 2.5008 1.8784 1.7092 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260295461.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:00 Heat of formation + Delta-G solvation = 3.175642 kcal Electronic energy + Delta-G solvation = -17499.684526 eV Core-core repulsion = 14567.537486 eV Total energy + Delta-G solvation = -2932.147040 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.91441 -42.61133 -39.13217 -36.19381 -33.99410 -32.73047 -32.37824 -29.36762 -27.43873 -27.04174 -25.01706 -23.40437 -22.80264 -20.65487 -18.74319 -18.27772 -18.09601 -17.35383 -16.92328 -16.63691 -16.22459 -16.17820 -15.45786 -14.84428 -14.60945 -14.27306 -14.00096 -13.89166 -13.61458 -13.27046 -13.19960 -12.98283 -12.80951 -12.47467 -12.28224 -12.15526 -11.73710 -11.09419 -10.95857 -10.53384 -10.48090 -9.23404 -8.81280 -8.13947 -6.25434 -0.17123 0.24667 1.44138 1.46339 1.54951 1.69073 1.73290 2.45228 2.77532 3.05288 3.16913 3.27277 3.66136 3.78294 3.91067 4.11339 4.25350 4.36548 4.40517 4.60593 4.76737 4.82036 4.95731 5.01244 5.02671 5.13407 5.40242 5.48220 5.65358 5.83084 5.90599 6.09525 6.25500 6.38915 6.80302 6.94195 7.42850 8.91715 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.036581 B = 0.005778 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.247791 B = 4844.846516 C = 5317.993042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.100 3.900 3 H 0.028 0.972 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.023 3.977 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.141 3.859 13 C -0.216 4.216 14 C 0.058 3.942 15 N -0.453 5.453 16 C 0.063 3.937 17 C 0.052 3.948 18 F -0.126 7.126 19 C -0.110 4.110 20 C 0.056 3.944 21 N -0.478 5.478 22 C 0.069 3.931 23 H 0.030 0.970 24 H 0.070 0.930 25 H 0.028 0.972 26 H 0.264 0.736 27 H 0.139 0.861 28 H 0.195 0.805 29 H 0.171 0.829 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 0.011 13.334 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 H 0.046 0.954 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.176 4.176 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.198 1.198 12 C 0.032 3.968 13 C -0.240 4.240 14 C -0.074 4.074 15 N -0.160 5.160 16 C -0.106 4.106 17 C 0.030 3.970 18 F -0.105 7.105 19 C -0.140 4.140 20 C -0.054 4.054 21 N -0.161 5.161 22 C -0.071 4.071 23 H 0.049 0.951 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.157 0.843 28 H 0.211 0.789 29 H 0.188 0.812 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.065 -0.291 12.782 13.148 hybrid contribution 0.310 0.418 -0.474 0.704 sum 3.375 0.127 12.308 12.763 Atomic orbital electron populations 1.21609 0.96186 0.99568 1.00432 1.17484 0.93412 0.94491 0.86563 0.95424 1.21339 1.31642 1.12800 0.90660 0.92514 1.25562 0.95077 0.95577 1.01426 1.69952 1.37162 1.23667 1.24309 0.85634 0.78820 0.78436 0.79272 1.20133 1.20717 1.19801 1.21267 0.95790 0.92359 0.87419 1.21232 1.12940 0.95054 0.94821 1.20313 1.03146 0.88174 0.95767 1.67124 1.10251 1.30328 1.08316 1.23139 0.99516 0.97908 0.90014 1.18168 1.03188 0.94811 0.80868 1.91504 1.86835 1.97253 1.34893 1.20509 1.02067 0.99933 0.91443 1.18900 1.03750 0.90051 0.92669 1.44014 1.54873 1.07386 1.09813 1.22256 1.04673 0.75842 1.04364 0.95138 0.91132 0.95260 0.92662 0.84320 0.78871 0.81166 0.89622 0.87479 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.95 71.98 0.64 -4.79 16 2 C 0.10 4.68 2.45 -12.29 -0.03 4.65 16 3 H 0.03 1.36 6.77 -2.39 -0.02 1.34 16 4 C -0.53 -27.57 8.21 25.60 0.21 -27.36 16 5 H 0.06 3.02 6.77 -2.91 -0.02 3.00 16 6 C 0.02 1.21 5.30 84.65 0.45 1.66 16 7 N -0.91 -49.06 11.32 21.44 0.24 -48.82 16 8 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.14 5.98 5.77 40.91 0.24 6.21 16 13 C -0.22 -9.41 9.89 23.52 0.23 -9.18 16 14 C 0.06 2.30 7.51 41.73 0.31 2.62 16 15 N -0.45 -16.42 10.41 -184.90 -1.93 -18.35 16 16 C 0.06 1.77 11.15 84.90 0.95 2.71 16 17 C 0.05 1.37 7.33 22.48 0.16 1.53 16 18 F -0.13 -2.93 17.28 44.97 0.78 -2.15 16 19 C -0.11 -2.94 10.08 22.55 0.23 -2.72 16 20 C 0.06 1.92 6.81 39.08 0.27 2.18 16 21 N -0.48 -16.68 3.17 -524.65 -1.67 -18.35 16 22 C 0.07 1.73 10.81 127.77 1.38 3.12 16 23 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 27 H 0.14 6.27 7.58 -2.91 -0.02 6.25 16 28 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.11 1.96 8.11 -2.39 -0.02 1.94 16 32 H 0.08 2.30 6.81 -2.39 -0.02 2.28 16 Total: -1.00 -59.93 278.27 5.63 -54.30 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.14 Total: 8.50 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 5.04 Total: -19.36 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -3.35 Total: -85.51 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -59.93 5.63 -54.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295461.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.475 kcal (2) G-P(sol) polarization free energy of solvation -59.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds