Wall clock time and date at job start Mon Mar 30 2020 06:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00368 * 2 1 4 4 H 1.48500 * 109.47406 * 270.00110 * 3 2 1 5 5 H 1.48503 * 109.47031 * 30.00421 * 3 2 1 6 6 H 1.48500 * 109.47124 * 150.00125 * 3 2 1 7 7 C 1.37881 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99713 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.47412 * 59.99796 * 9 7 2 11 11 C 1.50697 * 109.47264 * 179.97438 * 9 7 2 12 12 C 1.38285 * 119.97319 * 59.72377 * 11 9 7 13 13 C 1.38247 * 120.11342 * 179.72409 * 12 11 9 14 14 C 1.38164 * 120.05232 * 0.55535 * 13 12 11 15 15 C 1.50701 * 120.02368 * 179.70211 * 14 13 12 16 16 O 1.42900 * 109.47173 * 0.02562 * 15 14 13 17 17 C 1.38706 * 119.94703 * 359.72173 * 14 13 12 18 18 O 1.35901 * 120.05682 * 179.97438 * 17 14 13 19 19 C 1.38122 * 119.97570 * 240.00257 * 11 9 7 20 20 C 1.53003 * 109.47204 * 300.00155 * 9 7 2 21 21 C 1.53001 * 117.51964 * 111.28411 * 20 9 7 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 9 23 23 H 0.97005 * 119.99628 * 359.97438 * 1 2 3 24 24 H 1.08004 * 119.94056 * 359.97438 * 12 11 9 25 25 H 1.08003 * 119.96968 * 180.25402 * 13 12 11 26 26 H 1.08995 * 109.46897 * 120.02213 * 15 14 13 27 27 H 1.08998 * 109.46928 * 240.01727 * 15 14 13 28 28 H 0.96701 * 113.99557 * 180.02562 * 16 15 14 29 29 H 0.96699 * 113.99764 * 270.01890 * 18 17 14 30 30 H 1.08004 * 120.02517 * 359.97438 * 19 11 9 31 31 H 1.09002 * 115.54973 * 325.58194 * 20 9 7 32 32 H 1.09001 * 117.49733 * 214.97413 * 21 20 9 33 33 H 1.08995 * 117.49577 * 359.97438 * 21 20 9 34 34 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 35 35 H 1.09004 * 117.51638 * 107.47550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6239 -2.5567 -0.8903 11 6 2.2301 -3.6446 -0.0018 12 6 3.1389 -3.7778 1.0319 13 6 4.0347 -4.8308 1.0366 14 6 4.0316 -5.7464 0.0020 15 6 5.0129 -6.8902 0.0043 16 8 5.8331 -6.8117 1.1718 17 6 3.1249 -5.6119 -1.0390 18 8 3.1202 -6.5110 -2.0581 19 6 2.2230 -4.5574 -1.0384 20 6 0.3718 -2.5804 1.2490 21 6 -1.1441 -2.5135 1.0524 22 6 -0.4799 -3.8382 1.4330 23 1 -0.4850 0.8401 0.0004 24 1 3.1462 -3.0602 1.8391 25 1 4.7408 -4.9349 1.8472 26 1 4.4695 -7.8350 0.0050 27 1 5.6402 -6.8325 -0.8851 28 1 6.4899 -7.5182 1.2392 29 1 3.7001 -6.2736 -2.7946 30 1 1.5158 -4.4507 -1.8477 31 1 0.7840 -2.1162 2.1450 32 1 -1.7290 -2.0052 1.8190 33 1 -1.5153 -2.4111 0.0328 34 1 -0.4140 -4.6075 0.6637 35 1 -0.6274 -4.2016 2.4501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:32 Heat of formation + Delta-G solvation = -72.768168 kcal Electronic energy + Delta-G solvation = -17918.646225 eV Core-core repulsion = 15074.373568 eV Total energy + Delta-G solvation = -2844.272657 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93038 -38.75000 -37.73518 -36.92013 -34.65756 -32.96599 -30.75406 -29.78045 -26.59492 -24.68697 -23.55430 -22.91773 -22.10418 -20.86085 -18.90572 -18.55941 -17.86154 -17.03990 -16.51580 -16.21390 -16.15009 -15.81826 -15.42688 -14.83914 -14.61033 -14.53354 -14.00354 -13.33014 -13.13001 -12.85035 -12.75254 -12.55478 -12.19918 -12.11813 -11.96718 -11.80916 -11.69038 -11.26570 -11.11057 -10.62434 -10.54935 -10.21413 -9.57731 -9.14018 -8.04415 -6.17843 0.44835 0.55328 1.41629 1.43835 1.52779 2.44590 2.85463 3.21574 3.30141 3.35914 3.42575 4.04340 4.15652 4.25629 4.29824 4.42739 4.50072 4.61879 4.62749 4.74046 4.81182 4.89894 5.05769 5.11845 5.23459 5.31540 5.47494 5.51016 5.61148 5.62425 5.70060 5.84839 6.02594 6.14426 6.37565 6.88038 6.90492 6.99305 7.48482 8.99593 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.006687 C = 0.006020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.385489 B = 4186.093553 C = 4650.335573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.024 3.976 3 Si 0.947 3.053 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.110 3.890 10 H 0.003 0.997 11 C -0.030 4.030 12 C -0.129 4.129 13 C -0.087 4.087 14 C -0.148 4.148 15 C 0.136 3.864 16 O -0.586 6.586 17 C 0.112 3.888 18 O -0.500 6.500 19 C -0.169 4.169 20 C -0.098 4.098 21 C -0.140 4.140 22 C -0.194 4.194 23 H 0.259 0.741 24 H 0.112 0.888 25 H 0.137 0.863 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.401 0.599 29 H 0.406 0.594 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.119 -12.304 -0.539 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.568 4.568 8 H 0.068 0.932 9 C 0.091 3.909 10 H 0.021 0.979 11 C -0.030 4.030 12 C -0.147 4.147 13 C -0.105 4.105 14 C -0.149 4.149 15 C 0.059 3.941 16 O -0.395 6.395 17 C 0.068 3.932 18 O -0.313 6.313 19 C -0.188 4.188 20 C -0.117 4.117 21 C -0.177 4.177 22 C -0.231 4.231 23 H 0.068 0.932 24 H 0.130 0.870 25 H 0.155 0.845 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.252 0.748 29 H 0.264 0.736 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.201 -11.970 -0.089 13.970 hybrid contribution 0.617 1.149 -0.530 1.408 sum 7.818 -10.821 -0.619 13.364 Atomic orbital electron populations 1.70138 1.06639 1.26817 1.49668 1.25620 0.95663 1.01658 0.94749 0.85738 0.78845 0.80108 0.78015 1.20472 1.20954 1.19641 1.21253 0.92554 0.90935 1.52013 0.93245 1.17321 0.90906 0.90425 0.92229 0.97854 1.20207 0.95465 0.94414 0.92904 1.21057 0.96210 0.98440 0.99038 1.20930 0.97978 0.93149 0.98405 1.20158 0.98782 0.99353 0.96606 1.20601 0.90702 0.94642 0.88129 1.86415 1.52549 1.56215 1.44362 1.17986 0.95375 0.89750 0.90112 1.84725 1.70171 1.46004 1.30390 1.21337 1.01781 0.95344 1.00329 1.21979 0.92624 0.98105 0.98943 1.22355 0.96375 0.98609 1.00363 1.23040 1.07089 0.91375 1.01586 0.93206 0.86965 0.84528 0.91521 0.90746 0.74826 0.73580 0.86512 0.91444 0.90531 0.91332 0.90240 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.12 11.43 21.45 0.25 -49.87 16 2 C 0.02 1.31 5.30 84.66 0.45 1.76 16 3 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.53 -28.91 8.21 25.60 0.21 -28.70 16 8 H 0.05 2.71 7.59 -2.91 -0.02 2.69 16 9 C 0.11 5.50 2.10 -12.29 -0.03 5.48 16 10 H 0.00 0.19 7.63 -2.38 -0.02 0.17 16 11 C -0.03 -1.30 4.39 -19.88 -0.09 -1.39 16 12 C -0.13 -5.27 8.81 22.28 0.20 -5.07 16 13 C -0.09 -3.03 9.37 22.25 0.21 -2.82 16 14 C -0.15 -4.65 5.89 -19.77 -0.12 -4.77 16 15 C 0.14 3.04 6.91 71.24 0.49 3.53 16 16 O -0.59 -12.46 12.14 -148.98 -1.81 -14.27 16 17 C 0.11 3.68 6.68 22.50 0.15 3.83 16 18 O -0.50 -12.98 12.93 -92.44 -1.20 -14.18 16 19 C -0.17 -6.63 9.61 22.37 0.21 -6.42 16 20 C -0.10 -4.63 3.88 -10.79 -0.04 -4.68 16 21 C -0.14 -6.28 9.04 30.59 0.28 -6.00 16 22 C -0.19 -7.82 9.87 30.60 0.30 -7.51 16 23 H 0.26 13.92 8.31 -92.70 -0.77 13.15 16 24 H 0.11 4.72 8.05 -2.91 -0.02 4.69 16 25 H 0.14 4.41 7.00 -2.91 -0.02 4.39 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.40 3.99 9.12 -74.06 -0.68 3.32 16 29 H 0.41 6.44 9.06 -74.06 -0.67 5.77 16 30 H 0.12 4.54 7.94 -2.91 -0.02 4.52 16 31 H 0.07 3.37 8.11 -2.39 -0.02 3.35 16 32 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.07 3.28 8.05 -2.39 -0.02 3.27 16 34 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 Total: -1.00 -64.66 299.02 1.26 -63.40 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -0.24 Total: 22.26 kcal Atomic # 6 Polarization: -54.99 SS G_CDS: 2.23 Total: -52.76 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.25 Total: -49.87 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -3.00 Total: -28.45 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -64.66 1.26 -63.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.366 kcal (2) G-P(sol) polarization free energy of solvation -64.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds