Wall clock time and date at job start Mon Mar 30 2020 06:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99482 * 2 1 4 4 H 1.48499 * 109.46696 * 264.34228 * 3 2 1 5 5 H 1.48497 * 109.47217 * 24.34707 * 3 2 1 6 6 H 1.48505 * 109.46804 * 144.34527 * 3 2 1 7 7 C 1.37873 * 120.00372 * 179.72254 * 2 1 3 8 8 H 1.08003 * 119.99930 * 5.19557 * 7 2 1 9 9 C 1.50697 * 120.00047 * 185.18908 * 7 2 1 10 10 H 1.09001 * 109.47562 * 34.81281 * 9 7 2 11 11 C 1.50703 * 109.47582 * 274.80859 * 9 7 2 12 12 C 1.38284 * 119.97086 * 300.00156 * 11 9 7 13 13 C 1.38244 * 120.11138 * 179.97438 * 12 11 9 14 14 C 1.38161 * 120.05381 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.02742 * 180.02562 * 14 13 12 16 16 O 1.42910 * 109.46894 * 0.02562 * 15 14 13 17 17 C 1.38707 * 119.94928 * 0.02562 * 14 13 12 18 18 O 1.35894 * 120.05869 * 179.97438 * 17 14 13 19 19 C 1.38118 * 119.97081 * 119.71982 * 11 9 7 20 20 C 1.53002 * 109.46983 * 154.80767 * 9 7 2 21 21 C 1.53001 * 117.50268 * 244.39937 * 20 9 7 22 22 C 1.53001 * 117.49900 * 175.73912 * 20 9 7 23 23 H 0.96994 * 120.00240 * 359.97438 * 1 2 3 24 24 H 1.08009 * 119.94428 * 359.97438 * 12 11 9 25 25 H 1.08002 * 119.97303 * 180.02562 * 13 12 11 26 26 H 1.08996 * 109.46947 * 120.00033 * 15 14 13 27 27 H 1.08999 * 109.47441 * 240.00537 * 15 14 13 28 28 H 0.96703 * 113.99462 * 180.02562 * 16 15 14 29 29 H 0.96700 * 114.00220 * 89.99876 * 18 17 14 30 30 H 1.08003 * 120.03202 * 0.02562 * 19 11 9 31 31 H 1.09001 * 115.55112 * 30.07762 * 20 9 7 32 32 H 1.09007 * 117.49513 * 0.02562 * 21 20 9 33 33 H 1.08992 * 117.49899 * 145.01807 * 21 20 9 34 34 H 1.09002 * 117.49951 * 214.98098 * 22 20 9 35 35 H 1.08998 * 117.50226 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.6160 1.9775 -1.3933 5 1 1.3918 2.6842 0.5772 6 1 3.4817 1.4778 0.8161 7 6 2.0046 -1.1940 0.0058 8 1 1.4679 -2.1278 -0.0744 9 6 3.5069 -1.1960 0.1238 10 1 3.8217 -0.3771 0.7708 11 6 4.1185 -1.0204 -1.2423 12 6 3.8601 -1.9439 -2.2387 13 6 4.4192 -1.7854 -3.4931 14 6 5.2373 -0.7032 -3.7543 15 6 5.8460 -0.5307 -5.1221 16 8 5.4309 -1.6058 -5.9672 17 6 5.4981 0.2245 -2.7566 18 8 6.3029 1.2895 -3.0109 19 6 4.9319 0.0657 -1.4997 20 6 3.9696 -2.5257 0.7227 21 6 4.6529 -2.4847 2.0910 22 6 5.4769 -2.7650 0.8318 23 1 -0.4850 0.8400 0.0004 24 1 3.2204 -2.7903 -2.0365 25 1 4.2156 -2.5077 -4.2697 26 1 5.5157 0.4158 -5.5500 27 1 6.9329 -0.5323 -5.0390 28 1 5.7862 -1.5596 -6.8654 29 1 5.8328 2.0685 -3.3384 30 1 5.1301 0.7889 -0.7224 31 1 3.3382 -3.3862 0.5010 32 1 4.7725 -1.5102 2.5648 33 1 4.4713 -3.3181 2.7694 34 1 5.8370 -3.7829 0.6823 35 1 6.1389 -1.9753 0.4765 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260317935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:35 Heat of formation + Delta-G solvation = -49.200311 kcal Electronic energy + Delta-G solvation = -18150.871852 eV Core-core repulsion = 15307.621174 eV Total energy + Delta-G solvation = -2843.250678 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.58958 -37.44222 -36.70933 -35.64292 -32.98062 -31.46401 -29.33431 -28.61919 -25.10506 -22.92627 -22.20610 -21.71941 -20.79431 -19.26788 -17.63773 -17.24030 -16.59464 -15.72876 -15.05775 -14.92864 -14.78305 -14.45356 -13.96344 -13.50787 -13.35196 -13.08671 -12.42358 -11.92583 -11.78746 -11.47080 -11.35060 -10.95310 -10.88372 -10.68235 -10.58012 -10.13353 -10.07337 -9.88725 -9.48993 -9.21022 -9.06178 -8.62743 -8.11569 -7.68850 -6.15859 -4.15002 1.86077 2.00966 3.24377 3.30527 3.31944 4.22812 4.28592 4.35576 4.50816 4.67441 5.15444 5.24679 5.40145 5.45519 5.56249 5.60236 5.68704 5.71742 5.98349 6.16937 6.18664 6.18990 6.34893 6.40292 6.57787 6.69286 6.69921 6.78662 7.00827 7.09967 7.13978 7.45275 7.55386 7.64882 7.67735 8.01270 8.42952 8.88089 9.45469 10.96387 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.008979 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.195861 B = 3117.465769 C = 3656.784276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.500 4.500 8 H 0.079 0.921 9 C 0.063 3.937 10 H 0.047 0.953 11 C -0.014 4.014 12 C -0.106 4.106 13 C -0.086 4.086 14 C -0.149 4.149 15 C 0.133 3.867 16 O -0.569 6.569 17 C 0.101 3.899 18 O -0.504 6.504 19 C -0.167 4.167 20 C -0.106 4.106 21 C -0.184 4.184 22 C -0.196 4.196 23 H 0.265 0.735 24 H 0.124 0.876 25 H 0.126 0.874 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.376 0.624 29 H 0.381 0.619 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.256 -0.265 -6.740 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.537 4.537 8 H 0.097 0.903 9 C 0.045 3.955 10 H 0.065 0.935 11 C -0.015 4.015 12 C -0.124 4.124 13 C -0.104 4.104 14 C -0.150 4.150 15 C 0.056 3.944 16 O -0.374 6.374 17 C 0.057 3.943 18 O -0.313 6.313 19 C -0.185 4.185 20 C -0.124 4.124 21 C -0.221 4.221 22 C -0.233 4.233 23 H 0.075 0.925 24 H 0.142 0.858 25 H 0.144 0.856 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.223 0.777 29 H 0.235 0.765 30 H 0.135 0.865 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.205 -0.699 -5.996 12.727 hybrid contribution 0.265 1.642 -0.705 1.807 sum 11.470 0.943 -6.701 13.317 Atomic orbital electron populations 1.69881 1.06193 1.27090 1.49907 1.24997 0.94668 0.98876 0.94108 0.87039 0.80218 0.84065 0.79138 1.19701 1.21609 1.18767 1.20873 0.87675 0.94767 1.50363 0.90302 1.18108 0.96322 0.92811 0.88303 0.93476 1.20653 0.90407 0.91596 0.98843 1.21009 0.99252 0.99969 0.92134 1.20810 0.95843 0.96860 0.96858 1.19695 1.02652 0.98668 0.93970 1.20600 0.97050 0.88633 0.88166 1.86486 1.75746 1.49147 1.25972 1.18071 0.94389 0.89289 0.92593 1.84765 1.35501 1.23188 1.87829 1.21263 0.99949 1.00779 0.96522 1.22310 0.92173 1.00110 0.97856 1.22913 1.05795 1.02091 0.91308 1.22931 0.95874 1.01415 1.03088 0.92503 0.85789 0.85569 0.93343 0.92747 0.77726 0.76450 0.86542 0.88344 0.89477 0.89737 0.89927 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.96 55.43 0.77 -25.96 16 2 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 3 Si 0.87 21.25 25.15 -169.99 -4.28 16.98 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.11 6.04 56.52 0.34 -5.76 16 7 C -0.50 -13.44 8.50 -34.44 -0.29 -13.73 16 8 H 0.08 2.28 7.96 -52.48 -0.42 1.86 16 9 C 0.06 1.45 1.75 -92.92 -0.16 1.28 16 10 H 0.05 1.12 5.18 -51.93 -0.27 0.85 16 11 C -0.01 -0.31 3.66 -104.65 -0.38 -0.69 16 12 C -0.11 -2.16 8.92 -39.56 -0.35 -2.51 16 13 C -0.09 -1.60 9.37 -39.61 -0.37 -1.98 16 14 C -0.15 -2.65 5.89 -104.47 -0.62 -3.27 16 15 C 0.13 1.84 6.91 36.01 0.25 2.08 16 16 O -0.57 -7.39 12.14 -35.23 -0.43 -7.81 16 17 C 0.10 1.86 6.68 -39.21 -0.26 1.59 16 18 O -0.50 -7.86 12.93 -19.41 -0.25 -8.12 16 19 C -0.17 -3.42 8.18 -39.43 -0.32 -3.74 16 20 C -0.11 -2.11 4.85 -90.62 -0.44 -2.55 16 21 C -0.18 -3.21 10.18 -26.69 -0.27 -3.48 16 22 C -0.20 -3.36 9.79 -26.69 -0.26 -3.62 16 23 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.12 2.49 8.05 -52.48 -0.42 2.07 16 25 H 0.13 2.20 7.00 -52.49 -0.37 1.84 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.38 2.80 9.12 45.56 0.42 3.22 16 29 H 0.38 4.31 9.06 45.56 0.41 4.73 16 30 H 0.12 2.37 7.25 -52.48 -0.38 1.99 16 31 H 0.10 1.96 8.01 -51.93 -0.42 1.54 16 32 H 0.09 1.52 8.03 -51.92 -0.42 1.10 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 1.51 8.04 -51.93 -0.42 1.10 16 LS Contribution 293.18 15.07 4.42 4.42 Total: -1.00 -31.56 293.18 -6.51 -38.07 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.16 Total: 10.98 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -3.58 Total: -28.55 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.77 Total: -25.96 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.68 Total: -15.93 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.28 Total: 16.98 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.56 -6.51 -38.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.133 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds