Wall clock time and date at job start Mon Mar 30 2020 06:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99482 * 2 1 4 4 H 1.48499 * 109.46696 * 264.34228 * 3 2 1 5 5 H 1.48497 * 109.47217 * 24.34707 * 3 2 1 6 6 H 1.48505 * 109.46804 * 144.34527 * 3 2 1 7 7 C 1.37873 * 120.00372 * 179.72254 * 2 1 3 8 8 H 1.08003 * 119.99930 * 5.19557 * 7 2 1 9 9 C 1.50697 * 120.00047 * 185.18908 * 7 2 1 10 10 H 1.09001 * 109.47562 * 34.81281 * 9 7 2 11 11 C 1.50703 * 109.47582 * 274.80859 * 9 7 2 12 12 C 1.38284 * 119.97086 * 300.00156 * 11 9 7 13 13 C 1.38244 * 120.11138 * 179.97438 * 12 11 9 14 14 C 1.38161 * 120.05381 * 359.97438 * 13 12 11 15 15 C 1.50706 * 120.02742 * 180.02562 * 14 13 12 16 16 O 1.42910 * 109.46894 * 0.02562 * 15 14 13 17 17 C 1.38707 * 119.94928 * 0.02562 * 14 13 12 18 18 O 1.35894 * 120.05869 * 179.97438 * 17 14 13 19 19 C 1.38118 * 119.97081 * 119.71982 * 11 9 7 20 20 C 1.53002 * 109.46983 * 154.80767 * 9 7 2 21 21 C 1.53001 * 117.50268 * 244.39937 * 20 9 7 22 22 C 1.53001 * 117.49900 * 175.73912 * 20 9 7 23 23 H 0.96994 * 120.00240 * 359.97438 * 1 2 3 24 24 H 1.08009 * 119.94428 * 359.97438 * 12 11 9 25 25 H 1.08002 * 119.97303 * 180.02562 * 13 12 11 26 26 H 1.08996 * 109.46947 * 120.00033 * 15 14 13 27 27 H 1.08999 * 109.47441 * 240.00537 * 15 14 13 28 28 H 0.96703 * 113.99462 * 180.02562 * 16 15 14 29 29 H 0.96700 * 114.00220 * 89.99876 * 18 17 14 30 30 H 1.08003 * 120.03202 * 0.02562 * 19 11 9 31 31 H 1.09001 * 115.55112 * 30.07762 * 20 9 7 32 32 H 1.09007 * 117.49513 * 0.02562 * 21 20 9 33 33 H 1.08992 * 117.49899 * 145.01807 * 21 20 9 34 34 H 1.09002 * 117.49951 * 214.98098 * 22 20 9 35 35 H 1.08998 * 117.50226 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.6160 1.9775 -1.3933 5 1 1.3918 2.6842 0.5772 6 1 3.4817 1.4778 0.8161 7 6 2.0046 -1.1940 0.0058 8 1 1.4679 -2.1278 -0.0744 9 6 3.5069 -1.1960 0.1238 10 1 3.8217 -0.3771 0.7708 11 6 4.1185 -1.0204 -1.2423 12 6 3.8601 -1.9439 -2.2387 13 6 4.4192 -1.7854 -3.4931 14 6 5.2373 -0.7032 -3.7543 15 6 5.8460 -0.5307 -5.1221 16 8 5.4309 -1.6058 -5.9672 17 6 5.4981 0.2245 -2.7566 18 8 6.3029 1.2895 -3.0109 19 6 4.9319 0.0657 -1.4997 20 6 3.9696 -2.5257 0.7227 21 6 4.6529 -2.4847 2.0910 22 6 5.4769 -2.7650 0.8318 23 1 -0.4850 0.8400 0.0004 24 1 3.2204 -2.7903 -2.0365 25 1 4.2156 -2.5077 -4.2697 26 1 5.5157 0.4158 -5.5500 27 1 6.9329 -0.5323 -5.0390 28 1 5.7862 -1.5596 -6.8654 29 1 5.8328 2.0685 -3.3384 30 1 5.1301 0.7889 -0.7224 31 1 3.3382 -3.3862 0.5010 32 1 4.7725 -1.5102 2.5648 33 1 4.4713 -3.3181 2.7694 34 1 5.8370 -3.7829 0.6823 35 1 6.1389 -1.9753 0.4765 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260317935.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:34 Heat of formation + Delta-G solvation = -72.604124 kcal Electronic energy + Delta-G solvation = -18151.886718 eV Core-core repulsion = 15307.621174 eV Total energy + Delta-G solvation = -2844.265544 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.01760 -38.90292 -37.77243 -36.98409 -34.91664 -33.09217 -30.82409 -30.22137 -26.60284 -24.67371 -23.68012 -23.10097 -22.22655 -20.80836 -19.15111 -18.80280 -17.97949 -17.11689 -16.73113 -16.30002 -16.21189 -15.74862 -15.42291 -15.16663 -14.79980 -14.55950 -14.24499 -13.45540 -13.32295 -13.09623 -12.91262 -12.63115 -12.29389 -12.15982 -12.08201 -11.82471 -11.48731 -11.29725 -11.15876 -10.89692 -10.80300 -10.51376 -9.61749 -9.17076 -8.31437 -6.33592 0.40354 0.50297 1.29202 1.30846 1.38868 2.30654 2.77151 2.95690 3.19196 3.30959 3.34625 3.94693 4.03057 4.13495 4.19196 4.24320 4.34900 4.44967 4.58481 4.63906 4.74753 4.83003 4.87920 4.95209 5.10342 5.16679 5.21899 5.34456 5.50047 5.52689 5.58281 5.63312 5.91995 6.03274 6.32714 6.71240 6.81821 6.96417 7.30028 8.84517 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.008979 C = 0.007655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.195861 B = 3117.465769 C = 3656.784276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.019 3.981 3 Si 0.924 3.076 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.243 1.243 7 C -0.495 4.495 8 H 0.040 0.960 9 C 0.070 3.930 10 H 0.039 0.961 11 C -0.032 4.032 12 C -0.123 4.123 13 C -0.087 4.087 14 C -0.150 4.150 15 C 0.137 3.863 16 O -0.586 6.586 17 C 0.109 3.891 18 O -0.499 6.499 19 C -0.182 4.182 20 C -0.138 4.138 21 C -0.176 4.176 22 C -0.171 4.171 23 H 0.265 0.735 24 H 0.112 0.888 25 H 0.137 0.863 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.401 0.599 29 H 0.404 0.596 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.105 0.637 -7.944 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.179 4.179 3 Si 0.749 3.251 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.051 3.949 10 H 0.057 0.943 11 C -0.032 4.032 12 C -0.141 4.141 13 C -0.105 4.105 14 C -0.150 4.150 15 C 0.059 3.941 16 O -0.395 6.395 17 C 0.064 3.936 18 O -0.312 6.312 19 C -0.201 4.201 20 C -0.156 4.156 21 C -0.213 4.213 22 C -0.208 4.208 23 H 0.074 0.926 24 H 0.130 0.870 25 H 0.155 0.845 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.252 0.748 29 H 0.262 0.738 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.086 0.205 -7.227 15.833 hybrid contribution -0.573 1.276 -0.423 1.461 sum 13.513 1.481 -7.650 15.599 Atomic orbital electron populations 1.70028 1.07971 1.27886 1.52578 1.25782 0.95326 1.02519 0.94272 0.86127 0.79561 0.79655 0.79791 1.18789 1.21731 1.16740 1.21090 0.90245 0.93109 1.48784 0.94186 1.17926 0.93432 0.94057 0.89507 0.94307 1.20413 0.92088 0.92824 0.97916 1.21003 1.00027 0.99949 0.93146 1.20944 0.95767 0.97582 0.96169 1.20160 1.01462 0.97389 0.96025 1.20598 0.97491 0.89723 0.86249 1.86419 1.76281 1.49011 1.27778 1.18026 0.93504 0.90160 0.91861 1.84709 1.35177 1.23428 1.87855 1.21356 1.00613 1.00366 0.97751 1.22143 0.94403 0.98490 1.00584 1.23035 1.04379 1.02967 0.90905 1.22937 0.93463 1.02595 1.01837 0.92597 0.86999 0.84540 0.91113 0.91194 0.74815 0.73802 0.86550 0.89445 0.89524 0.87643 0.87692 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 2 C 0.02 1.08 5.47 84.65 0.46 1.54 16 3 Si 0.92 44.14 25.15 68.60 1.73 45.86 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.24 -10.75 6.04 99.48 0.60 -10.15 16 7 C -0.49 -27.74 8.50 25.60 0.22 -27.52 16 8 H 0.04 2.48 7.96 -2.91 -0.02 2.45 16 9 C 0.07 3.21 1.75 -12.29 -0.02 3.19 16 10 H 0.04 1.83 5.18 -2.39 -0.01 1.82 16 11 C -0.03 -1.36 3.66 -19.88 -0.07 -1.43 16 12 C -0.12 -5.06 8.92 22.28 0.20 -4.86 16 13 C -0.09 -3.13 9.37 22.25 0.21 -2.92 16 14 C -0.15 -4.89 5.89 -19.77 -0.12 -5.00 16 15 C 0.14 3.21 6.91 71.24 0.49 3.70 16 16 O -0.59 -13.11 12.14 -148.98 -1.81 -14.92 16 17 C 0.11 3.70 6.68 22.51 0.15 3.85 16 18 O -0.50 -13.56 12.93 -92.35 -1.19 -14.76 16 19 C -0.18 -7.16 8.18 22.37 0.18 -6.98 16 20 C -0.14 -5.50 4.85 -10.79 -0.05 -5.55 16 21 C -0.18 -5.88 10.18 30.62 0.31 -5.57 16 22 C -0.17 -5.57 9.79 30.62 0.30 -5.27 16 23 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 24 H 0.11 4.72 8.05 -2.91 -0.02 4.70 16 25 H 0.14 4.57 7.00 -2.91 -0.02 4.55 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.40 4.40 9.12 -74.06 -0.68 3.73 16 29 H 0.40 7.31 9.06 -74.06 -0.67 6.64 16 30 H 0.12 4.49 7.25 -2.91 -0.02 4.47 16 31 H 0.09 3.62 8.01 -2.39 -0.02 3.60 16 32 H 0.09 2.90 8.03 -2.38 -0.02 2.88 16 33 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.08 2.80 8.04 -2.39 -0.02 2.78 16 Total: -1.00 -69.58 293.18 0.95 -68.63 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.34 Total: 26.52 kcal Atomic # 6 Polarization: -55.08 SS G_CDS: 2.26 Total: -52.82 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.30 Total: -58.52 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -3.00 Total: -29.68 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.73 Total: 45.86 kcal Total: -69.58 0.95 -68.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260317935.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.972 kcal (2) G-P(sol) polarization free energy of solvation -69.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds