Wall clock time and date at job start Mon Mar 30 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.64120 * 2 1 4 4 C 1.53535 * 109.54987 * 239.74696 * 2 1 3 5 5 S 1.81620 * 107.28127 * 167.47266 * 4 2 1 6 6 C 1.76462 * 102.61168 * 46.43440 * 5 4 2 7 7 C 1.39629 * 117.71822 * 167.24085 * 6 5 4 8 8 C 1.37739 * 120.62554 * 179.27705 * 7 6 5 9 9 C 1.38339 * 119.50990 * 0.02562 * 8 7 6 10 10 C 1.37765 * 120.01308 * 0.27057 * 9 8 7 11 11 C 1.38176 * 122.29772 * 347.02055 * 6 5 4 12 12 C 1.50034 * 124.79001 * 1.03867 * 11 6 5 13 13 H 1.09006 * 108.66321 * 98.44744 * 12 11 6 14 14 C 1.50707 * 108.66029 * 216.45045 * 12 11 6 15 15 H 1.07997 * 119.99732 * 55.90395 * 14 12 11 16 16 C 1.37875 * 120.00128 * 236.18870 * 14 12 11 17 17 N 1.31516 * 119.99888 * 5.74636 * 16 14 12 18 18 Si 1.86803 * 119.99694 * 185.75412 * 16 14 12 19 19 H 1.48493 * 109.47179 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47177 * 119.99902 * 18 16 14 21 21 H 1.48506 * 109.46654 * 239.99269 * 18 16 14 22 22 H 1.09009 * 109.46775 * 299.74469 * 1 2 3 23 23 H 1.08995 * 109.47260 * 59.73949 * 1 2 3 24 24 H 1.08998 * 109.47385 * 179.74563 * 1 2 3 25 25 H 1.09002 * 109.46993 * 180.25372 * 3 2 1 26 26 H 1.08998 * 109.46758 * 300.26001 * 3 2 1 27 27 H 1.09001 * 109.46591 * 60.26073 * 3 2 1 28 28 H 1.09003 * 109.89991 * 48.02568 * 4 2 1 29 29 H 1.09003 * 109.88821 * 286.91030 * 4 2 1 30 30 H 1.08000 * 119.68827 * 359.25911 * 7 6 5 31 31 H 1.08003 * 120.24445 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.99781 * 180.25743 * 9 8 7 33 33 H 1.07996 * 119.46949 * 179.97438 * 10 9 8 34 34 H 0.97003 * 119.99439 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0443 1.4410 0.0000 4 6 2.0437 -0.7289 -1.2498 5 16 3.8196 -0.3748 -1.3891 6 6 4.3965 -0.6441 0.2566 7 6 5.7762 -0.7232 0.4564 8 6 6.2924 -0.9172 1.7186 9 6 5.4325 -1.0348 2.7959 10 6 4.0705 -0.9633 2.6014 11 6 3.5350 -0.7711 1.3294 12 6 2.0384 -0.7212 1.2361 13 1 1.6553 -1.7416 1.2244 14 6 1.5022 -0.0202 2.4578 15 1 1.8449 0.9739 2.7039 16 6 0.5787 -0.6505 3.2645 17 7 0.2501 -1.9029 3.0337 18 14 -0.2060 0.2746 4.6851 19 1 0.3298 1.6587 4.7306 20 1 -1.6780 0.3192 4.4939 21 1 0.1066 -0.4192 5.9603 22 1 -0.3633 0.5099 0.8924 23 1 -0.3633 0.5178 -0.8876 24 1 -0.3634 -1.0276 -0.0046 25 1 3.1343 1.4378 -0.0046 26 1 1.6786 1.9572 -0.8876 27 1 1.6862 1.9545 0.8923 28 1 1.5219 -0.3625 -2.1339 29 1 1.8869 -1.8024 -1.1437 30 1 6.4448 -0.6317 -0.3867 31 1 7.3606 -0.9771 1.8661 32 1 5.8289 -1.1829 3.7895 33 1 3.4072 -1.0566 3.4486 34 1 -0.4000 -2.3461 3.6011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260332095.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:42 Heat of formation + Delta-G solvation = 10.087099 kcal Electronic energy + Delta-G solvation = -16551.359955 eV Core-core repulsion = 14153.433043 eV Total energy + Delta-G solvation = -2397.926912 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.93897 -36.64630 -32.69501 -30.74467 -30.14988 -27.38547 -26.47467 -26.13781 -23.51174 -21.86942 -20.83560 -18.12671 -16.74158 -16.27993 -15.21415 -14.87475 -14.32725 -14.22291 -13.64373 -13.18653 -13.07954 -12.61872 -12.41473 -12.02024 -11.86504 -11.57866 -11.13586 -11.02787 -10.95585 -10.78950 -10.49181 -10.36104 -10.17531 -9.74050 -9.56608 -9.26260 -8.97240 -8.72529 -8.62466 -7.79990 -6.66254 -6.15453 -4.16873 1.99185 2.19826 2.33541 3.06567 3.20215 3.30478 3.34394 4.30298 4.53822 5.11058 5.46792 5.54063 5.59250 5.67793 5.81650 5.92991 6.13868 6.17987 6.28815 6.34751 6.48279 6.54073 6.68495 6.80239 6.85674 6.89938 7.08495 7.12488 7.20989 7.27893 7.35713 7.54388 7.64751 7.77548 7.82550 8.26193 8.91363 9.43843 10.91903 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.010953 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.179485 B = 2555.656997 C = 3441.985777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.050 4.050 3 C -0.137 4.137 4 C -0.088 4.088 5 S -0.165 6.165 6 C -0.095 4.095 7 C -0.113 4.113 8 C -0.134 4.134 9 C -0.137 4.137 10 C -0.082 4.082 11 C -0.030 4.030 12 C 0.057 3.943 13 H 0.087 0.913 14 C -0.497 4.497 15 H 0.059 0.941 16 C 0.069 3.931 17 N -0.888 5.888 18 Si 0.885 3.115 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.284 1.284 22 H 0.071 0.929 23 H 0.028 0.972 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.136 0.864 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.815 1.873 -4.491 6.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.052 4.052 3 C -0.194 4.194 4 C -0.237 4.237 5 S 0.078 5.922 6 C -0.207 4.207 7 C -0.136 4.136 8 C -0.154 4.154 9 C -0.158 4.158 10 C -0.102 4.102 11 C -0.035 4.035 12 C 0.038 3.962 13 H 0.105 0.895 14 C -0.535 4.535 15 H 0.077 0.923 16 C -0.133 4.133 17 N -0.526 5.526 18 Si 0.712 3.288 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 H 0.090 0.910 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.154 0.846 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.235 2.048 -5.513 7.874 hybrid contribution -1.083 -0.001 1.940 2.222 sum 4.152 2.047 -3.572 5.847 Atomic orbital electron populations 1.21574 0.93843 1.01269 1.00398 1.20567 0.96324 0.95255 0.93008 1.21992 1.01390 0.95584 1.00454 1.24038 0.92650 1.03995 1.02983 1.84762 1.09358 1.87790 1.10294 1.21306 0.95828 1.08016 0.95532 1.20664 0.92977 1.02871 0.97060 1.20745 0.98678 1.03279 0.92686 1.21067 0.94165 1.02401 0.98124 1.21558 0.94065 0.96581 0.97984 1.20626 0.97699 0.93949 0.91250 1.17906 0.85580 0.99530 0.93159 0.89546 1.20884 1.23371 1.01458 1.07743 0.92285 1.24931 0.96547 0.94622 0.97229 1.69880 1.33157 1.10165 1.39375 0.86639 0.79406 0.80359 0.82361 1.19579 1.20882 1.21012 0.91037 0.95313 0.93259 0.92229 0.94716 0.91922 0.88821 0.89931 0.87081 0.86971 0.87105 0.84645 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 8.20 37.16 0.30 -1.91 16 2 C -0.05 -1.00 0.54 -154.80 -0.08 -1.08 16 3 C -0.14 -2.66 7.55 37.16 0.28 -2.38 16 4 C -0.09 -1.60 5.52 37.44 0.21 -1.40 16 5 S -0.16 -3.01 20.22 -107.50 -2.17 -5.18 16 6 C -0.09 -1.91 5.21 -39.09 -0.20 -2.11 16 7 C -0.11 -2.04 9.65 -39.24 -0.38 -2.42 16 8 C -0.13 -2.28 10.06 -39.73 -0.40 -2.68 16 9 C -0.14 -2.51 10.03 -39.72 -0.40 -2.91 16 10 C -0.08 -1.75 8.94 -39.34 -0.35 -2.11 16 11 C -0.03 -0.65 4.99 -104.56 -0.52 -1.17 16 12 C 0.06 1.30 1.56 -93.81 -0.15 1.15 16 13 H 0.09 2.26 6.85 -51.93 -0.36 1.91 16 14 C -0.50 -12.15 4.16 -34.44 -0.14 -12.29 16 15 H 0.06 1.49 7.04 -52.49 -0.37 1.12 16 16 C 0.07 1.74 5.31 -17.82 -0.09 1.64 16 17 N -0.89 -23.45 12.59 55.43 0.70 -22.75 16 18 Si 0.88 19.93 29.54 -169.99 -5.02 14.91 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H 0.07 1.54 7.00 -51.92 -0.36 1.18 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 1.20 5.27 -51.61 -0.27 0.93 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.28 6.74 -51.93 -0.35 0.93 16 28 H 0.09 1.50 8.11 -51.93 -0.42 1.07 16 29 H 0.08 1.53 8.08 -51.93 -0.42 1.11 16 30 H 0.11 1.79 8.05 -52.49 -0.42 1.37 16 31 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 32 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.14 3.11 6.87 -52.49 -0.36 2.74 16 34 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 278.24 15.07 4.19 4.19 Total: -1.00 -25.45 278.24 -8.82 -34.27 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.58 Total: 4.23 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: -1.93 Total: -29.67 kcal Atomic # 7 Polarization: -23.45 SS G_CDS: 0.70 Total: -22.75 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.17 Total: -5.18 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -25.45 -8.82 -34.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260332095.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.358 kcal (2) G-P(sol) polarization free energy of solvation -25.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds