Wall clock time and date at job start Mon Mar 30 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.64120 * 2 1 4 4 C 1.53535 * 109.54987 * 239.74696 * 2 1 3 5 5 S 1.81620 * 107.28127 * 167.47266 * 4 2 1 6 6 C 1.76462 * 102.61168 * 46.43440 * 5 4 2 7 7 C 1.39629 * 117.71822 * 167.24085 * 6 5 4 8 8 C 1.37739 * 120.62554 * 179.27705 * 7 6 5 9 9 C 1.38339 * 119.50990 * 0.02562 * 8 7 6 10 10 C 1.37765 * 120.01308 * 0.27057 * 9 8 7 11 11 C 1.38176 * 122.29772 * 347.02055 * 6 5 4 12 12 C 1.50034 * 124.79001 * 1.03867 * 11 6 5 13 13 H 1.09006 * 108.66321 * 98.44744 * 12 11 6 14 14 C 1.50707 * 108.66029 * 216.45045 * 12 11 6 15 15 H 1.07997 * 119.99732 * 55.90395 * 14 12 11 16 16 C 1.37875 * 120.00128 * 236.18870 * 14 12 11 17 17 N 1.31516 * 119.99888 * 5.74636 * 16 14 12 18 18 Si 1.86803 * 119.99694 * 185.75412 * 16 14 12 19 19 H 1.48493 * 109.47179 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47177 * 119.99902 * 18 16 14 21 21 H 1.48506 * 109.46654 * 239.99269 * 18 16 14 22 22 H 1.09009 * 109.46775 * 299.74469 * 1 2 3 23 23 H 1.08995 * 109.47260 * 59.73949 * 1 2 3 24 24 H 1.08998 * 109.47385 * 179.74563 * 1 2 3 25 25 H 1.09002 * 109.46993 * 180.25372 * 3 2 1 26 26 H 1.08998 * 109.46758 * 300.26001 * 3 2 1 27 27 H 1.09001 * 109.46591 * 60.26073 * 3 2 1 28 28 H 1.09003 * 109.89991 * 48.02568 * 4 2 1 29 29 H 1.09003 * 109.88821 * 286.91030 * 4 2 1 30 30 H 1.08000 * 119.68827 * 359.25911 * 7 6 5 31 31 H 1.08003 * 120.24445 * 180.02562 * 8 7 6 32 32 H 1.07998 * 119.99781 * 180.25743 * 9 8 7 33 33 H 1.07996 * 119.46949 * 179.97438 * 10 9 8 34 34 H 0.97003 * 119.99439 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0443 1.4410 0.0000 4 6 2.0437 -0.7289 -1.2498 5 16 3.8196 -0.3748 -1.3891 6 6 4.3965 -0.6441 0.2566 7 6 5.7762 -0.7232 0.4564 8 6 6.2924 -0.9172 1.7186 9 6 5.4325 -1.0348 2.7959 10 6 4.0705 -0.9633 2.6014 11 6 3.5350 -0.7711 1.3294 12 6 2.0384 -0.7212 1.2361 13 1 1.6553 -1.7416 1.2244 14 6 1.5022 -0.0202 2.4578 15 1 1.8449 0.9739 2.7039 16 6 0.5787 -0.6505 3.2645 17 7 0.2501 -1.9029 3.0337 18 14 -0.2060 0.2746 4.6851 19 1 0.3298 1.6587 4.7306 20 1 -1.6780 0.3192 4.4939 21 1 0.1066 -0.4192 5.9603 22 1 -0.3633 0.5099 0.8924 23 1 -0.3633 0.5178 -0.8876 24 1 -0.3634 -1.0276 -0.0046 25 1 3.1343 1.4378 -0.0046 26 1 1.6786 1.9572 -0.8876 27 1 1.6862 1.9545 0.8923 28 1 1.5219 -0.3625 -2.1339 29 1 1.8869 -1.8024 -1.1437 30 1 6.4448 -0.6317 -0.3867 31 1 7.3606 -0.9771 1.8661 32 1 5.8289 -1.1829 3.7895 33 1 3.4072 -1.0566 3.4486 34 1 -0.4000 -2.3461 3.6011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260332095.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:42 Heat of formation + Delta-G solvation = -0.830858 kcal Electronic energy + Delta-G solvation = -16551.833393 eV Core-core repulsion = 14153.433043 eV Total energy + Delta-G solvation = -2398.400350 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.51252 -38.20541 -34.57108 -32.33071 -31.65558 -29.06018 -28.06406 -27.75519 -25.31358 -23.37191 -22.38340 -19.76801 -18.39348 -18.01574 -16.76351 -16.56850 -15.93685 -15.75129 -15.24467 -14.79445 -14.69669 -14.22752 -13.97182 -13.69701 -13.38252 -13.17365 -12.85522 -12.72036 -12.59179 -12.40985 -12.15384 -12.01030 -11.80532 -11.39662 -11.22790 -10.99625 -10.60799 -10.52193 -10.27026 -9.37751 -8.16436 -8.05157 -6.14536 0.48414 0.69179 0.88091 1.36693 1.42458 1.50887 1.57238 2.42099 3.00649 3.18757 3.92810 4.03752 4.21036 4.22632 4.35572 4.44637 4.61737 4.70837 4.76326 4.78187 4.94793 5.00854 5.13502 5.20335 5.24736 5.35960 5.51157 5.54363 5.58906 5.66003 5.71399 5.74845 5.82017 6.07066 6.24019 6.41868 6.96467 7.47188 8.97258 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.021799 B = 0.010953 C = 0.008133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.179485 B = 2555.656997 C = 3441.985777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.052 4.052 3 C -0.127 4.127 4 C -0.089 4.089 5 S -0.136 6.136 6 C -0.113 4.113 7 C -0.115 4.115 8 C -0.121 4.121 9 C -0.134 4.134 10 C -0.110 4.110 11 C -0.059 4.059 12 C 0.062 3.938 13 H 0.045 0.955 14 C -0.487 4.487 15 H 0.046 0.954 16 C 0.030 3.970 17 N -0.919 5.919 18 Si 0.934 3.066 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.285 1.285 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.155 0.845 32 H 0.137 0.863 33 H 0.106 0.894 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.584 2.796 -5.705 9.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.053 4.053 3 C -0.185 4.185 4 C -0.237 4.237 5 S 0.107 5.893 6 C -0.225 4.225 7 C -0.137 4.137 8 C -0.140 4.140 9 C -0.154 4.154 10 C -0.130 4.130 11 C -0.065 4.065 12 C 0.044 3.956 13 H 0.063 0.937 14 C -0.525 4.525 15 H 0.064 0.936 16 C -0.169 4.169 17 N -0.559 5.559 18 Si 0.761 3.239 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.212 1.212 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.173 0.827 32 H 0.155 0.845 33 H 0.124 0.876 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.008 2.984 -6.726 10.161 hybrid contribution -1.520 -0.292 2.303 2.775 sum 5.488 2.691 -4.423 7.545 Atomic orbital electron populations 1.21482 0.93809 1.00308 1.00754 1.20495 0.96372 0.95650 0.92824 1.21879 1.00875 0.94942 1.00766 1.23994 0.93426 1.03305 1.02960 1.84558 1.08639 1.87517 1.08538 1.21582 0.96802 1.07987 0.96120 1.21069 0.92363 1.01746 0.98571 1.21208 1.00590 1.00677 0.91551 1.21349 0.92857 1.01109 1.00128 1.21469 0.95480 0.98910 0.97111 1.20524 0.97211 0.96383 0.92388 1.17745 0.86682 0.97269 0.93942 0.93733 1.20947 1.22659 1.00636 1.08272 0.93565 1.25440 0.97256 0.95096 0.99129 1.69999 1.34091 1.11340 1.40464 0.85864 0.78592 0.79343 0.80098 1.19375 1.20763 1.21151 0.93444 0.92028 0.94890 0.92837 0.92179 0.93715 0.85909 0.90880 0.84477 0.82716 0.84520 0.87618 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.14 8.20 71.98 0.59 -3.55 16 2 C -0.05 -2.07 0.54 -52.37 -0.03 -2.10 16 3 C -0.13 -4.81 7.55 71.98 0.54 -4.27 16 4 C -0.09 -3.09 5.52 72.16 0.40 -2.69 16 5 S -0.14 -4.64 20.22 -56.49 -1.14 -5.78 16 6 C -0.11 -4.39 5.21 22.59 0.12 -4.28 16 7 C -0.11 -3.80 9.65 22.49 0.22 -3.59 16 8 C -0.12 -3.68 10.06 22.18 0.22 -3.45 16 9 C -0.13 -4.68 10.03 22.18 0.22 -4.46 16 10 C -0.11 -4.78 8.94 22.42 0.20 -4.58 16 11 C -0.06 -2.64 4.99 -19.82 -0.10 -2.74 16 12 C 0.06 2.95 1.56 -12.86 -0.02 2.93 16 13 H 0.04 2.47 6.85 -2.38 -0.02 2.45 16 14 C -0.49 -24.76 4.16 25.60 0.11 -24.66 16 15 H 0.05 2.43 7.04 -2.91 -0.02 2.41 16 16 C 0.03 1.55 5.31 84.65 0.45 2.00 16 17 N -0.92 -50.82 12.59 21.45 0.27 -50.55 16 18 Si 0.93 42.11 29.54 68.60 2.03 44.14 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 22 H 0.05 2.07 7.00 -2.38 -0.02 2.06 16 23 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 2.08 5.27 -2.59 -0.01 2.07 16 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.04 1.82 6.74 -2.39 -0.02 1.81 16 28 H 0.12 3.55 8.11 -2.39 -0.02 3.53 16 29 H 0.07 2.69 8.08 -2.39 -0.02 2.67 16 30 H 0.14 3.82 8.05 -2.91 -0.02 3.80 16 31 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 32 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 33 H 0.11 5.13 6.87 -2.91 -0.02 5.11 16 34 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -56.46 278.24 5.16 -51.30 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.08 Total: 16.32 kcal Atomic # 6 Polarization: -58.35 SS G_CDS: 2.92 Total: -55.43 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: 0.27 Total: -50.55 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -1.14 Total: -5.78 kcal Total: -56.46 5.16 -51.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260332095.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.474 kcal (2) G-P(sol) polarization free energy of solvation -56.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds