Wall clock time and date at job start Mon Mar 30 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76196 * 103.00260 * 2 1 4 4 C 1.38996 * 120.07939 * 0.02599 * 3 2 1 5 5 C 1.38060 * 119.92393 * 179.97438 * 4 3 2 6 6 C 1.38333 * 120.07382 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.91564 * 180.02562 * 6 5 4 8 8 C 1.50697 * 115.55189 * 113.91607 * 7 6 5 9 9 H 1.08001 * 120.00354 * 144.24207 * 8 7 6 10 10 C 1.37881 * 120.00104 * 324.24356 * 8 7 6 11 11 N 1.31512 * 119.99632 * 2.05497 * 10 8 7 12 12 Si 1.86800 * 120.00290 * 182.06094 * 10 8 7 13 13 H 1.48496 * 109.47185 * 59.99593 * 12 10 8 14 14 H 1.48497 * 109.47106 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.46933 * 299.99899 * 12 10 8 16 16 C 1.53004 * 117.49879 * 328.24536 * 7 6 5 17 17 C 1.53005 * 117.49903 * 259.58437 * 7 6 5 18 18 C 1.38272 * 120.16186 * 359.74676 * 6 5 4 19 19 C 1.50702 * 119.96142 * 180.25712 * 18 6 5 20 20 C 1.38100 * 120.08395 * 0.50812 * 18 6 5 21 21 H 1.08997 * 109.47223 * 59.99678 * 1 2 3 22 22 H 1.08993 * 109.46915 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46501 * 300.00079 * 1 2 3 24 24 H 1.08001 * 120.03897 * 359.95449 * 4 3 2 25 25 H 1.07993 * 119.96270 * 180.02562 * 5 4 3 26 26 H 0.97000 * 119.99898 * 175.00186 * 11 10 8 27 27 H 1.08997 * 117.50062 * 359.97438 * 16 7 6 28 28 H 1.09002 * 117.49664 * 145.02676 * 16 7 6 29 29 H 1.08992 * 117.50064 * 214.97918 * 17 7 6 30 30 H 1.08993 * 117.49531 * 359.97438 * 17 7 6 31 31 H 1.09002 * 109.47292 * 275.33762 * 19 18 6 32 32 H 1.09010 * 109.47110 * 35.33241 * 19 18 6 33 33 H 1.08999 * 109.47657 * 155.33186 * 19 18 6 34 34 H 1.08001 * 120.04425 * 179.77398 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1953 2.6662 0.0005 5 6 1.5095 4.0105 0.0011 6 6 2.8330 4.4130 0.0016 7 6 3.1720 5.8814 0.0028 8 6 3.8551 6.3898 1.2461 9 1 4.6115 7.1571 1.1714 10 6 3.5144 5.8754 2.4792 11 7 2.6226 4.9128 2.5665 12 14 4.3194 6.5459 4.0258 13 1 4.0249 7.9962 4.1482 14 1 3.7854 5.8299 5.2120 15 1 5.7886 6.3441 3.9464 16 6 2.2066 6.8299 -0.7109 17 6 3.5702 6.5156 -1.3315 18 6 3.8456 3.4714 0.0069 19 6 5.2858 3.9149 0.0133 20 6 3.5387 2.1249 0.0011 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 0.1618 2.3526 0.0002 25 1 0.7213 4.7487 0.0019 26 1 2.4358 4.5011 3.4247 27 1 1.3265 6.3918 -1.1817 28 1 2.0659 7.8218 -0.2814 29 1 4.3259 7.3007 -1.3099 30 1 3.5874 5.8706 -2.2100 31 1 5.6097 4.1126 -1.0085 32 1 5.3835 4.8236 0.6076 33 1 5.9060 3.1297 0.4456 34 1 4.3301 1.3900 0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260366150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:47 Heat of formation + Delta-G solvation = 40.964913 kcal Electronic energy + Delta-G solvation = -16101.960331 eV Core-core repulsion = 13705.372382 eV Total energy + Delta-G solvation = -2396.587950 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.77318 -35.81084 -32.27391 -31.79418 -29.58318 -28.86666 -25.84680 -25.67730 -22.44047 -21.41297 -20.33100 -19.12880 -16.80366 -16.40827 -14.96544 -14.67030 -14.36831 -13.89245 -13.60844 -13.52507 -13.18501 -12.70442 -12.58579 -12.12301 -11.86329 -11.39195 -11.34377 -11.09329 -10.96663 -10.63187 -10.50675 -10.39253 -10.28411 -9.80406 -9.46614 -9.16664 -8.88299 -8.54265 -8.21009 -7.70632 -6.73301 -5.93365 -4.13983 2.03946 2.31675 2.43918 2.93249 3.25490 3.32163 3.33330 4.32784 4.75186 4.94480 5.24240 5.27347 5.48883 5.69202 5.77054 5.83994 5.91022 6.22236 6.26487 6.31277 6.43451 6.56001 6.60884 6.63281 6.80931 6.87752 6.95119 7.01249 7.18160 7.24094 7.37474 7.55748 7.75857 7.94068 8.05090 8.30143 8.81557 9.44070 10.94000 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.023418 B = 0.008066 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.386488 B = 3470.539849 C = 3838.360392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.160 6.160 3 C -0.107 4.107 4 C -0.140 4.140 5 C -0.073 4.073 6 C 0.054 3.946 7 C 0.081 3.919 8 C -0.492 4.492 9 H 0.063 0.937 10 C 0.075 3.925 11 N -0.859 5.859 12 Si 0.890 3.110 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.275 1.275 16 C -0.208 4.208 17 C -0.201 4.201 18 C -0.057 4.057 19 C -0.115 4.115 20 C -0.106 4.106 21 H 0.078 0.922 22 H 0.097 0.903 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.263 0.737 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.042 0.958 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 -5.471 -4.692 7.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.079 5.921 3 C -0.219 4.219 4 C -0.163 4.163 5 C -0.093 4.093 6 C 0.052 3.948 7 C 0.080 3.920 8 C -0.529 4.529 9 H 0.081 0.919 10 C -0.131 4.131 11 N -0.494 5.494 12 Si 0.718 3.282 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.246 4.246 17 C -0.238 4.238 18 C -0.059 4.059 19 C -0.172 4.172 20 C -0.129 4.129 21 H 0.097 0.903 22 H 0.116 0.884 23 H 0.099 0.901 24 H 0.122 0.878 25 H 0.127 0.873 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.553 -6.604 -4.520 8.152 hybrid contribution -0.641 1.381 1.055 1.853 sum -2.194 -5.223 -3.465 6.640 Atomic orbital electron populations 1.23500 0.95558 1.05862 1.05375 1.84980 1.05806 1.06819 1.94468 1.21094 0.96673 0.93870 1.10221 1.20776 0.96582 0.93518 1.05388 1.20571 0.96458 0.93748 0.98520 1.18923 0.91393 0.94002 0.90501 1.17787 0.96818 0.86875 0.90496 1.20363 1.21671 1.22245 0.88668 0.91857 1.24998 0.94354 0.94884 0.98868 1.69947 1.30879 1.23223 1.25310 0.86674 0.79732 0.79216 0.82591 1.20164 1.21236 1.20078 1.23095 0.92028 1.02383 1.07057 1.22897 0.98646 1.04175 0.98091 1.19384 0.95922 0.91441 0.99153 1.20889 0.91701 1.03252 1.01355 1.20340 0.93407 0.95309 1.03804 0.90274 0.88408 0.90099 0.87830 0.87297 0.92606 0.91480 0.90232 0.90311 0.91289 0.93011 0.87985 0.93884 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.15 101.05 0.92 -0.79 16 2 S -0.16 -2.65 22.56 -107.50 -2.43 -5.08 16 3 C -0.11 -2.14 6.11 -39.03 -0.24 -2.38 16 4 C -0.14 -2.82 9.36 -39.37 -0.37 -3.19 16 5 C -0.07 -1.62 8.51 -39.61 -0.34 -1.96 16 6 C 0.05 1.25 3.08 -104.58 -0.32 0.93 16 7 C 0.08 1.89 1.30 -156.81 -0.20 1.69 16 8 C -0.49 -12.54 6.86 -34.44 -0.24 -12.77 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.07 1.93 5.38 -17.82 -0.10 1.83 16 11 N -0.86 -23.03 10.86 55.43 0.60 -22.43 16 12 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 16 C -0.21 -4.49 9.42 -26.69 -0.25 -4.74 16 17 C -0.20 -4.17 9.94 -26.69 -0.27 -4.43 16 18 C -0.06 -1.27 5.85 -104.66 -0.61 -1.88 16 19 C -0.12 -2.34 9.50 36.01 0.34 -2.00 16 20 C -0.11 -2.21 9.42 -39.37 -0.37 -2.58 16 21 H 0.08 0.96 7.75 -51.93 -0.40 0.55 16 22 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.08 1.05 7.75 -51.92 -0.40 0.64 16 24 H 0.10 1.82 5.88 -52.49 -0.31 1.52 16 25 H 0.11 2.38 7.05 -52.49 -0.37 2.01 16 26 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 27 H 0.07 1.36 7.16 -51.93 -0.37 0.99 16 28 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.10 2.29 5.46 -51.92 -0.28 2.01 16 33 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 34 H 0.11 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 292.18 15.07 4.40 4.40 Total: -1.00 -26.83 292.18 -9.12 -35.94 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.64 Total: 4.09 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: -2.04 Total: -32.27 kcal Atomic # 7 Polarization: -23.03 SS G_CDS: 0.60 Total: -22.43 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.43 Total: -5.08 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.83 -9.12 -35.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260366150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.910 kcal (2) G-P(sol) polarization free energy of solvation -26.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds