Wall clock time and date at job start Mon Mar 30 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76196 * 103.00260 * 2 1 4 4 C 1.38996 * 120.07939 * 0.02599 * 3 2 1 5 5 C 1.38060 * 119.92393 * 179.97438 * 4 3 2 6 6 C 1.38333 * 120.07382 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.91564 * 180.02562 * 6 5 4 8 8 C 1.50697 * 115.55189 * 113.91607 * 7 6 5 9 9 H 1.08001 * 120.00354 * 144.24207 * 8 7 6 10 10 C 1.37881 * 120.00104 * 324.24356 * 8 7 6 11 11 N 1.31512 * 119.99632 * 2.05497 * 10 8 7 12 12 Si 1.86800 * 120.00290 * 182.06094 * 10 8 7 13 13 H 1.48496 * 109.47185 * 59.99593 * 12 10 8 14 14 H 1.48497 * 109.47106 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.46933 * 299.99899 * 12 10 8 16 16 C 1.53004 * 117.49879 * 328.24536 * 7 6 5 17 17 C 1.53005 * 117.49903 * 259.58437 * 7 6 5 18 18 C 1.38272 * 120.16186 * 359.74676 * 6 5 4 19 19 C 1.50702 * 119.96142 * 180.25712 * 18 6 5 20 20 C 1.38100 * 120.08395 * 0.50812 * 18 6 5 21 21 H 1.08997 * 109.47223 * 59.99678 * 1 2 3 22 22 H 1.08993 * 109.46915 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46501 * 300.00079 * 1 2 3 24 24 H 1.08001 * 120.03897 * 359.95449 * 4 3 2 25 25 H 1.07993 * 119.96270 * 180.02562 * 5 4 3 26 26 H 0.97000 * 119.99898 * 175.00186 * 11 10 8 27 27 H 1.08997 * 117.50062 * 359.97438 * 16 7 6 28 28 H 1.09002 * 117.49664 * 145.02676 * 16 7 6 29 29 H 1.08992 * 117.50064 * 214.97918 * 17 7 6 30 30 H 1.08993 * 117.49531 * 359.97438 * 17 7 6 31 31 H 1.09002 * 109.47292 * 275.33762 * 19 18 6 32 32 H 1.09010 * 109.47110 * 35.33241 * 19 18 6 33 33 H 1.08999 * 109.47657 * 155.33186 * 19 18 6 34 34 H 1.08001 * 120.04425 * 179.77398 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1953 2.6662 0.0005 5 6 1.5095 4.0105 0.0011 6 6 2.8330 4.4130 0.0016 7 6 3.1720 5.8814 0.0028 8 6 3.8551 6.3898 1.2461 9 1 4.6115 7.1571 1.1714 10 6 3.5144 5.8754 2.4792 11 7 2.6226 4.9128 2.5665 12 14 4.3194 6.5459 4.0258 13 1 4.0249 7.9962 4.1482 14 1 3.7854 5.8299 5.2120 15 1 5.7886 6.3441 3.9464 16 6 2.2066 6.8299 -0.7109 17 6 3.5702 6.5156 -1.3315 18 6 3.8456 3.4714 0.0069 19 6 5.2858 3.9149 0.0133 20 6 3.5387 2.1249 0.0011 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 0.1618 2.3526 0.0002 25 1 0.7213 4.7487 0.0019 26 1 2.4358 4.5011 3.4247 27 1 1.3265 6.3918 -1.1817 28 1 2.0659 7.8218 -0.2814 29 1 4.3259 7.3007 -1.3099 30 1 3.5874 5.8706 -2.2100 31 1 5.6097 4.1126 -1.0085 32 1 5.3835 4.8236 0.6076 33 1 5.9060 3.1297 0.4456 34 1 4.3301 1.3900 0.0015 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260366150.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:47 Heat of formation + Delta-G solvation = 29.873632 kcal Electronic energy + Delta-G solvation = -16102.441285 eV Core-core repulsion = 13705.372382 eV Total energy + Delta-G solvation = -2397.068904 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40883 -37.49441 -34.15716 -33.41987 -31.18828 -29.95348 -27.63594 -27.36403 -24.10117 -23.07716 -21.96415 -20.87909 -18.57514 -17.87698 -16.59177 -16.47005 -16.00228 -15.42532 -15.17904 -14.88413 -14.61415 -14.12909 -14.03521 -13.75859 -13.30024 -13.13049 -12.94462 -12.79004 -12.73871 -12.32873 -12.22628 -12.05645 -11.90427 -11.39574 -11.03237 -10.94950 -10.63848 -10.27015 -9.89826 -9.31126 -8.28599 -7.73942 -6.11052 0.71249 0.78014 0.80960 1.43049 1.45379 1.50631 1.63819 2.43998 3.07511 3.11024 3.69770 4.15789 4.19195 4.24954 4.29530 4.33713 4.58904 4.60570 4.65998 4.80800 4.85731 4.95655 4.97648 5.00746 5.14363 5.22420 5.30157 5.39393 5.55708 5.57195 5.68443 5.77544 5.91061 6.26477 6.40783 6.45138 6.86976 7.47463 8.97399 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.023418 B = 0.008066 C = 0.007293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.386488 B = 3470.539849 C = 3838.360392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.162 6.162 3 C -0.114 4.114 4 C -0.142 4.142 5 C -0.090 4.090 6 C 0.035 3.965 7 C 0.054 3.946 8 C -0.498 4.498 9 H 0.056 0.944 10 C 0.036 3.964 11 N -0.879 5.879 12 Si 0.940 3.060 13 H -0.275 1.275 14 H -0.291 1.291 15 H -0.272 1.272 16 C -0.206 4.206 17 C -0.182 4.182 18 C -0.075 4.075 19 C -0.110 4.110 20 C -0.118 4.118 21 H 0.088 0.912 22 H 0.129 0.871 23 H 0.080 0.920 24 H 0.128 0.872 25 H 0.102 0.898 26 H 0.256 0.744 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 -6.517 -5.167 8.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.077 5.923 3 C -0.226 4.226 4 C -0.165 4.165 5 C -0.109 4.109 6 C 0.033 3.967 7 C 0.053 3.947 8 C -0.536 4.536 9 H 0.075 0.925 10 C -0.167 4.167 11 N -0.515 5.515 12 Si 0.766 3.234 13 H -0.200 1.200 14 H -0.217 1.217 15 H -0.197 1.197 16 C -0.244 4.244 17 C -0.219 4.219 18 C -0.077 4.077 19 C -0.166 4.166 20 C -0.141 4.141 21 H 0.107 0.893 22 H 0.147 0.853 23 H 0.099 0.901 24 H 0.146 0.854 25 H 0.121 0.879 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.917 -7.641 -5.007 9.334 hybrid contribution -0.574 1.648 1.156 2.093 sum -2.491 -5.993 -3.851 7.546 Atomic orbital electron populations 1.23651 0.92120 1.08086 1.05860 1.84967 1.09555 1.03673 1.94078 1.21412 0.96400 0.96172 1.08570 1.21026 0.97992 0.92854 1.04676 1.20655 0.96135 0.94695 0.99455 1.18963 0.92035 0.93849 0.91855 1.17870 0.98203 0.87689 0.90895 1.20560 1.21366 1.21828 0.89822 0.92541 1.25527 0.95002 0.95235 1.00930 1.70096 1.32098 1.24260 1.25008 0.85893 0.79097 0.78521 0.79842 1.20014 1.21695 1.19673 1.23069 0.92833 1.01654 1.06831 1.22895 0.98028 1.03741 0.97260 1.19644 0.96479 0.92062 0.99502 1.20814 0.91357 1.02463 1.02006 1.20575 0.94448 0.95185 1.03858 0.89259 0.85311 0.90109 0.85424 0.87945 0.93450 0.90493 0.90747 0.89717 0.89982 0.91373 0.90386 0.92532 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.15 113.37 1.04 -1.81 16 2 S -0.16 -5.00 22.56 -56.49 -1.27 -6.27 16 3 C -0.11 -4.41 6.11 22.62 0.14 -4.27 16 4 C -0.14 -5.60 9.36 22.41 0.21 -5.39 16 5 C -0.09 -3.96 8.51 22.25 0.19 -3.78 16 6 C 0.04 1.64 3.08 -19.83 -0.06 1.58 16 7 C 0.05 2.52 1.30 -53.67 -0.07 2.45 16 8 C -0.50 -25.54 6.86 25.60 0.18 -25.36 16 9 H 0.06 2.88 7.81 -2.91 -0.02 2.86 16 10 C 0.04 1.86 5.38 84.66 0.46 2.32 16 11 N -0.88 -47.61 10.86 21.45 0.23 -47.37 16 12 Si 0.94 42.07 29.54 68.60 2.03 44.09 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 14 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 16 C -0.21 -8.83 9.42 30.62 0.29 -8.54 16 17 C -0.18 -7.39 9.94 30.62 0.30 -7.08 16 18 C -0.08 -3.30 5.85 -19.89 -0.12 -3.42 16 19 C -0.11 -4.41 9.50 71.24 0.68 -3.73 16 20 C -0.12 -4.82 9.42 22.41 0.21 -4.61 16 21 H 0.09 1.84 7.75 -2.39 -0.02 1.82 16 22 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.08 1.84 7.75 -2.39 -0.02 1.82 16 24 H 0.13 4.24 5.88 -2.91 -0.02 4.22 16 25 H 0.10 4.52 7.05 -2.91 -0.02 4.50 16 26 H 0.26 13.74 8.32 -92.71 -0.77 12.97 16 27 H 0.08 3.10 7.16 -2.39 -0.02 3.08 16 28 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 30 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.08 3.52 5.46 -2.38 -0.01 3.50 16 33 H 0.06 2.04 8.05 -2.39 -0.02 2.02 16 34 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -56.43 292.18 5.51 -50.92 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 1.08 Total: 20.28 kcal Atomic # 6 Polarization: -65.08 SS G_CDS: 3.44 Total: -61.64 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.23 Total: -47.37 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -1.27 Total: -6.27 kcal Total: -56.43 5.51 -50.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260366150.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.795 kcal (2) G-P(sol) polarization free energy of solvation -56.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds