Wall clock time and date at job start Mon Mar 30 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76199 * 103.00226 * 2 1 4 4 C 1.39003 * 120.07829 * 5.47197 * 3 2 1 5 5 C 1.38064 * 119.91699 * 180.29656 * 4 3 2 6 6 C 1.50693 * 119.95856 * 179.68216 * 5 4 3 7 7 C 1.38324 * 120.07930 * 359.71011 * 5 4 3 8 8 C 1.38286 * 120.16031 * 359.97124 * 7 5 4 9 9 C 1.38098 * 120.08174 * 0.04998 * 8 7 5 10 10 C 1.50696 * 120.03664 * 179.97438 * 9 8 7 11 11 C 1.50702 * 115.55073 * 114.63580 * 10 9 8 12 12 H 1.08001 * 120.00494 * 114.80724 * 11 10 9 13 13 C 1.37875 * 119.99866 * 294.81025 * 11 10 9 14 14 N 1.31514 * 120.00001 * 352.26713 * 13 11 10 15 15 Si 1.86797 * 120.00367 * 172.54847 * 13 11 10 16 16 H 1.48502 * 109.47491 * 89.99546 * 15 13 11 17 17 H 1.48497 * 109.47688 * 209.99969 * 15 13 11 18 18 H 1.48499 * 109.47006 * 329.99893 * 15 13 11 19 19 C 1.53006 * 117.49869 * 260.29775 * 10 9 8 20 20 C 1.52996 * 117.50530 * 328.95978 * 10 9 8 21 21 H 1.09001 * 109.47178 * 299.99956 * 1 2 3 22 22 H 1.09005 * 109.47140 * 59.99739 * 1 2 3 23 23 H 1.09002 * 109.47356 * 180.02562 * 1 2 3 24 24 H 1.07995 * 120.03767 * 359.97438 * 4 3 2 25 25 H 1.08999 * 109.47601 * 270.02364 * 6 5 4 26 26 H 1.09005 * 109.47165 * 30.02909 * 6 5 4 27 27 H 1.09004 * 109.47136 * 150.02379 * 6 5 4 28 28 H 1.08005 * 119.91769 * 180.02562 * 7 5 4 29 29 H 1.08000 * 119.95296 * 180.02562 * 8 7 5 30 30 H 0.97004 * 120.00481 * 185.03062 * 14 13 11 31 31 H 1.08995 * 117.49748 * 215.00561 * 19 10 9 32 32 H 1.08999 * 117.49655 * 0.03216 * 19 10 9 33 33 H 1.09008 * 117.49584 * 359.97438 * 20 10 9 34 34 H 1.08999 * 117.50256 * 144.99891 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.2005 2.6650 0.1147 5 6 1.5143 4.0095 0.1082 6 6 0.4195 5.0383 0.2252 7 6 2.8323 4.4132 -0.0063 8 6 3.8402 3.4726 -0.1140 9 6 3.5338 2.1260 -0.1086 10 6 4.6329 1.1018 -0.2266 11 6 4.8355 0.2237 0.9813 12 1 4.6446 -0.8373 0.9158 13 6 5.2645 0.7748 2.1701 14 7 5.6422 2.0338 2.2128 15 14 5.3166 -0.2689 3.7184 16 1 6.6448 -0.9236 3.8297 17 1 5.0893 0.5943 4.9052 18 1 4.2571 -1.3072 3.6514 19 6 4.8711 0.4764 -1.6025 20 6 5.8728 1.4860 -1.0365 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.1712 2.3504 0.2036 25 1 0.0616 5.3030 -0.7697 26 1 -0.4037 4.6281 0.8103 27 1 0.8086 5.9283 0.7200 28 1 3.0749 5.4657 -0.0107 29 1 4.8682 3.7915 -0.2028 30 1 6.0125 2.4017 3.0304 31 1 5.1743 -0.5701 -1.6340 32 1 4.2331 0.8062 -2.4224 33 1 5.8933 2.4796 -1.4844 34 1 6.8350 1.1038 -0.6956 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260388373.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:26 Heat of formation + Delta-G solvation = 27.201881 kcal Electronic energy + Delta-G solvation = -16051.197317 eV Core-core repulsion = 13654.012557 eV Total energy + Delta-G solvation = -2397.184760 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31338 -37.79648 -34.00762 -33.00125 -31.99410 -29.63627 -27.95915 -27.14672 -23.88000 -22.98021 -22.47768 -20.91881 -18.59849 -17.46967 -16.67599 -16.46089 -16.08899 -15.40726 -15.13687 -14.83568 -14.64391 -14.48326 -14.22683 -13.59377 -13.24484 -13.07335 -12.92958 -12.90104 -12.76546 -12.60496 -12.26377 -12.03915 -11.77870 -11.34477 -11.06572 -10.80677 -10.42324 -10.28856 -10.06342 -9.19629 -8.09082 -7.94599 -6.10849 0.54528 0.71807 0.92823 1.39143 1.42444 1.52089 1.89524 2.45054 2.98001 3.20387 3.60243 4.08546 4.10433 4.26423 4.35706 4.37668 4.50358 4.52819 4.63745 4.76077 4.81926 4.90128 4.93279 4.97359 5.04466 5.16646 5.21457 5.27635 5.44117 5.58944 5.72554 5.79177 5.88585 6.01130 6.30571 6.46256 6.88797 7.51904 9.01890 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.017908 B = 0.010085 C = 0.009222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.189025 B = 2775.666958 C = 3035.640105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.127 6.127 3 C -0.094 4.094 4 C -0.149 4.149 5 C -0.097 4.097 6 C -0.100 4.100 7 C -0.140 4.140 8 C -0.097 4.097 9 C -0.009 4.009 10 C 0.061 3.939 11 C -0.483 4.483 12 H 0.052 0.948 13 C 0.032 3.968 14 N -0.894 5.894 15 Si 0.935 3.065 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.269 1.269 19 C -0.173 4.173 20 C -0.177 4.177 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.119 0.881 24 H 0.138 0.862 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.256 0.744 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.773 2.767 -4.526 12.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.117 5.883 3 C -0.206 4.206 4 C -0.173 4.173 5 C -0.099 4.099 6 C -0.157 4.157 7 C -0.160 4.160 8 C -0.117 4.117 9 C -0.014 4.014 10 C 0.060 3.940 11 C -0.521 4.521 12 H 0.070 0.930 13 C -0.169 4.169 14 N -0.531 5.531 15 Si 0.762 3.238 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.193 1.193 19 C -0.210 4.210 20 C -0.215 4.215 21 H 0.100 0.900 22 H 0.107 0.893 23 H 0.138 0.862 24 H 0.155 0.845 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.152 0.848 29 H 0.123 0.877 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.148 1.835 -4.382 11.205 hybrid contribution -0.024 0.613 1.067 1.231 sum -10.172 2.448 -3.315 10.975 Atomic orbital electron populations 1.23792 0.95143 1.07623 1.05525 1.86105 1.05691 1.04114 1.92436 1.21677 0.96213 0.96865 1.05888 1.21167 0.98144 0.92746 1.05204 1.20024 0.95287 0.94315 1.00273 1.20730 0.95527 0.96485 1.02924 1.21204 0.92513 0.99525 1.02752 1.20919 0.98800 0.92555 0.99440 1.19300 0.92083 0.94062 0.95982 1.17631 0.91480 0.94877 0.90031 1.20453 1.44775 0.92941 0.93959 0.92971 1.25518 0.94965 0.95719 1.00708 1.70081 1.41302 1.13966 1.27797 0.85887 0.78482 0.79219 0.80226 1.20248 1.21398 1.19305 1.22822 1.03306 0.97448 0.97415 1.22719 0.95153 0.97568 1.06075 0.89963 0.89326 0.86209 0.84475 0.89986 0.90957 0.90880 0.84760 0.87692 0.93459 0.90112 0.90156 0.90876 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.95 9.18 113.37 1.04 -2.91 16 2 S -0.13 -4.98 20.55 -56.49 -1.16 -6.14 16 3 C -0.09 -4.02 6.08 22.62 0.14 -3.88 16 4 C -0.15 -5.34 9.02 22.41 0.20 -5.13 16 5 C -0.10 -3.24 5.88 -19.89 -0.12 -3.36 16 6 C -0.10 -2.29 10.01 71.23 0.71 -1.58 16 7 C -0.14 -5.18 9.70 22.30 0.22 -4.96 16 8 C -0.10 -4.35 9.22 22.25 0.21 -4.14 16 9 C -0.01 -0.42 4.80 -19.73 -0.09 -0.51 16 10 C 0.06 3.03 0.71 -53.67 -0.04 2.99 16 11 C -0.48 -26.49 7.63 25.60 0.20 -26.30 16 12 H 0.05 2.92 7.82 -2.91 -0.02 2.89 16 13 C 0.03 1.78 5.38 84.65 0.46 2.24 16 14 N -0.89 -51.15 13.08 21.45 0.28 -50.87 16 15 Si 0.94 44.48 29.55 68.60 2.03 46.51 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 19 C -0.17 -7.67 9.93 30.62 0.30 -7.36 16 20 C -0.18 -8.41 9.43 30.62 0.29 -8.12 16 21 H 0.08 2.01 7.51 -2.39 -0.02 1.99 16 22 H 0.09 2.02 7.99 -2.39 -0.02 2.00 16 23 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.14 4.03 5.91 -2.91 -0.02 4.01 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.07 1.47 8.08 -2.38 -0.02 1.45 16 27 H 0.07 1.52 8.09 -2.38 -0.02 1.50 16 28 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.10 4.90 7.01 -2.91 -0.02 4.88 16 30 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 31 H 0.08 3.51 8.14 -2.39 -0.02 3.49 16 32 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 33 H 0.07 3.27 7.13 -2.38 -0.02 3.25 16 34 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -62.54 298.07 5.73 -56.81 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 1.08 Total: 16.73 kcal Atomic # 6 Polarization: -66.55 SS G_CDS: 3.51 Total: -63.04 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.28 Total: -50.87 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: -4.98 SS G_CDS: -1.16 Total: -6.14 kcal Total: -62.54 5.73 -56.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260388373.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.011 kcal (2) G-P(sol) polarization free energy of solvation -62.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds