Wall clock time and date at job start Mon Mar 30 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47364 * 2 1 4 4 C 1.50706 * 109.47082 * 120.00406 * 2 1 3 5 5 H 1.07990 * 119.99656 * 245.31714 * 4 2 1 6 6 C 1.37874 * 119.99938 * 65.31253 * 4 2 1 7 7 N 1.31515 * 120.00329 * 355.44011 * 6 4 2 8 8 Si 1.86805 * 119.99888 * 175.15727 * 6 4 2 9 9 H 1.48505 * 109.46693 * 90.00346 * 8 6 4 10 10 H 1.48494 * 109.47051 * 210.00336 * 8 6 4 11 11 H 1.48499 * 109.47116 * 330.00720 * 8 6 4 12 12 C 1.50703 * 109.47008 * 239.99900 * 2 1 3 13 13 C 1.36751 * 119.80384 * 0.02562 * 12 2 1 14 14 C 1.39369 * 119.75259 * 180.02562 * 13 12 2 15 15 C 1.46816 * 134.33969 * 179.97438 * 14 13 12 16 16 C 1.33969 * 106.19045 * 180.02562 * 15 14 13 17 17 O 1.34480 * 110.16175 * 359.97438 * 16 15 14 18 18 C 1.34811 * 110.89121 * 0.02562 * 17 16 15 19 19 C 1.38889 * 133.47707 * 179.97438 * 18 17 16 20 20 C 1.38095 * 119.79498 * 179.74222 * 19 18 17 21 21 F 1.35099 * 119.67962 * 180.28442 * 20 19 18 22 22 H 1.09006 * 109.47345 * 295.05855 * 1 2 3 23 23 H 1.09002 * 109.47255 * 55.05318 * 1 2 3 24 24 H 1.08998 * 109.47865 * 175.05738 * 1 2 3 25 25 H 1.09001 * 109.46647 * 184.95166 * 3 2 1 26 26 H 1.09000 * 109.47191 * 304.95424 * 3 2 1 27 27 H 1.08995 * 109.46769 * 64.95329 * 3 2 1 28 28 H 0.97003 * 119.99945 * 4.86437 * 7 6 4 29 29 H 1.07999 * 120.12541 * 359.97438 * 13 12 2 30 30 H 1.08000 * 126.90803 * 0.02562 * 15 14 13 31 31 H 1.07999 * 124.92007 * 179.97438 * 16 15 14 32 32 H 1.07998 * 120.09913 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5805 -0.1640 1.9835 6 6 1.7919 -2.0582 1.3947 7 7 1.0484 -2.7046 0.5235 8 14 2.5287 -2.9677 2.8505 9 1 1.5862 -2.9131 3.9968 10 1 2.7727 -4.3841 2.4773 11 1 3.8130 -2.3288 3.2348 12 6 2.0323 -0.7104 -1.2305 13 6 1.1400 -1.2282 -2.1282 14 6 1.6057 -1.8855 -3.2655 15 6 0.9589 -2.5446 -4.4069 16 6 1.9494 -2.9967 -5.1876 17 8 3.1421 -2.6862 -4.6496 18 6 2.9868 -2.0160 -3.4902 19 6 3.8778 -1.4835 -2.5674 20 6 3.3987 -0.8305 -1.4489 21 9 4.2675 -0.3084 -0.5557 22 1 -0.3634 0.4353 0.9310 23 1 -0.3634 0.5887 -0.8424 24 1 -0.3635 -1.0238 -0.0885 25 1 3.1264 1.4436 -0.0887 26 1 1.6060 1.9813 -0.8423 27 1 1.7509 1.9300 0.9310 28 1 0.7276 -2.2508 -0.2715 29 1 0.0785 -1.1288 -1.9562 30 1 -0.1020 -2.6449 -4.5820 31 1 1.8101 -3.5329 -6.1146 32 1 4.9420 -1.5758 -2.7266 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389045.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:57 Heat of formation + Delta-G solvation = -33.093556 kcal Electronic energy + Delta-G solvation = -18508.585264 eV Core-core repulsion = 15542.572722 eV Total energy + Delta-G solvation = -2966.012542 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.75129 -43.32832 -39.87602 -36.64861 -33.59830 -33.28376 -30.75353 -29.76043 -28.06261 -26.60263 -24.56484 -23.26342 -22.22377 -21.17684 -19.13530 -18.83542 -18.17367 -17.19712 -17.11725 -16.27263 -16.01735 -15.68147 -15.37265 -15.13948 -14.69928 -14.28953 -13.85431 -13.76891 -13.69255 -12.96346 -12.77882 -12.72791 -12.57630 -12.50434 -12.25013 -11.96911 -11.64523 -11.45778 -11.02958 -10.73096 -10.29462 -9.34583 -9.03850 -8.29792 -6.19527 -0.10728 0.37678 1.45196 1.50883 1.58938 1.75310 1.78196 2.58417 2.65497 3.27150 3.53814 3.58508 3.80494 3.97654 4.07544 4.32547 4.49130 4.52858 4.59735 4.68298 4.78347 4.86419 4.98283 5.01185 5.04723 5.18525 5.22881 5.40347 5.48271 5.56063 5.72157 5.81726 6.18640 6.20962 6.35856 6.83112 7.57158 8.97741 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.023187 B = 0.009286 C = 0.008877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.287148 B = 3014.655686 C = 3153.600956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.068 3.932 3 C -0.122 4.122 4 C -0.590 4.590 5 H 0.040 0.960 6 C -0.015 4.015 7 N -0.941 5.941 8 Si 1.094 2.906 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.279 1.279 12 C -0.085 4.085 13 C -0.069 4.069 14 C -0.153 4.153 15 C -0.222 4.222 16 C 0.016 3.984 17 O -0.203 6.203 18 C 0.039 3.961 19 C -0.159 4.159 20 C 0.116 3.884 21 F -0.133 7.133 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.284 0.716 29 H 0.134 0.866 30 H 0.181 0.819 31 H 0.262 0.738 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 1.096 -10.603 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.068 3.932 3 C -0.179 4.179 4 C -0.628 4.628 5 H 0.059 0.941 6 C -0.216 4.216 7 N -0.581 5.581 8 Si 0.919 3.081 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.205 1.205 12 C -0.086 4.086 13 C -0.087 4.087 14 C -0.155 4.155 15 C -0.240 4.240 16 C -0.047 4.047 17 O -0.105 6.105 18 C -0.008 4.008 19 C -0.178 4.178 20 C 0.096 3.904 21 F -0.111 7.111 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.151 0.849 30 H 0.198 0.802 31 H 0.277 0.723 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.895 -0.396 -9.919 9.967 hybrid contribution -0.030 1.469 -0.172 1.480 sum 0.866 1.074 -10.090 10.184 Atomic orbital electron populations 1.21954 0.97108 1.00336 0.99576 1.17458 0.93030 0.92731 0.90007 1.21729 1.00410 0.95404 1.00396 1.22028 1.39037 0.96278 1.05424 0.94141 1.26643 0.94833 0.96042 1.04077 1.70810 1.32318 1.42216 1.12754 0.83218 0.76235 0.74970 0.73658 1.19915 1.21553 1.20484 1.20238 0.91460 0.99883 0.97011 1.20177 1.00043 0.96809 0.91716 1.20364 0.93538 1.03509 0.98047 1.22828 1.01933 1.05090 0.94196 1.24898 0.79777 0.99879 1.00192 1.83956 1.33961 1.61484 1.31067 1.19011 0.94126 0.99293 0.88388 1.19652 1.00425 1.04170 0.93585 1.17137 0.87184 0.98285 0.87770 1.91412 1.68763 1.84113 1.66813 0.93984 0.93303 0.93800 0.93602 0.93205 0.93025 0.90066 0.84871 0.80163 0.72279 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.96 6.90 71.98 0.50 -5.47 16 2 C 0.07 3.29 0.49 -53.67 -0.03 3.27 16 3 C -0.12 -5.20 8.27 71.98 0.60 -4.60 16 4 C -0.59 -32.44 6.98 25.60 0.18 -32.27 16 5 H 0.04 2.27 7.75 -2.92 -0.02 2.25 16 6 C -0.01 -0.83 5.14 84.65 0.43 -0.39 16 7 N -0.94 -55.21 12.82 21.45 0.27 -54.94 16 8 Si 1.09 51.52 29.91 68.60 2.05 53.57 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C -0.08 -3.99 3.46 -20.05 -0.07 -4.06 16 13 C -0.07 -3.01 7.31 22.19 0.16 -2.85 16 14 C -0.15 -5.99 6.40 -20.20 -0.13 -6.12 16 15 C -0.22 -6.36 11.14 23.54 0.26 -6.09 16 16 C 0.02 0.38 11.96 66.85 0.80 1.18 16 17 O -0.20 -6.47 10.58 -9.26 -0.10 -6.57 16 18 C 0.04 1.51 7.41 22.98 0.17 1.68 16 19 C -0.16 -6.43 10.04 22.39 0.22 -6.21 16 20 C 0.12 5.33 6.76 22.39 0.15 5.49 16 21 F -0.13 -6.27 14.28 44.97 0.64 -5.62 16 22 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 23 H 0.05 1.89 7.79 -2.39 -0.02 1.87 16 24 H 0.04 2.14 4.94 -2.39 -0.01 2.13 16 25 H 0.04 1.97 6.13 -2.39 -0.01 1.96 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.28 15.87 2.70 -92.71 -0.25 15.62 16 29 H 0.13 5.56 5.80 -2.91 -0.02 5.55 16 30 H 0.18 4.02 8.06 -2.91 -0.02 3.99 16 31 H 0.26 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.15 5.31 8.06 -2.91 -0.02 5.29 16 Total: -1.00 -66.91 264.87 7.78 -59.13 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.66 Total: 10.88 kcal Atomic # 6 Polarization: -59.69 SS G_CDS: 3.25 Total: -56.44 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.27 Total: -54.94 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.10 Total: -6.57 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.64 Total: -5.62 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.05 Total: 53.57 kcal Total: -66.91 7.78 -59.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389045.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.033 kcal (2) G-P(sol) polarization free energy of solvation -66.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds