Wall clock time and date at job start Mon Mar 30 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32837 * 125.21434 * 2 1 4 4 C 1.39285 * 115.68085 * 180.09300 * 3 2 1 5 5 C 1.34510 * 113.82965 * 359.67172 * 4 3 2 6 6 S 1.75663 * 125.21573 * 179.97438 * 2 1 3 7 7 C 1.51406 * 125.77312 * 180.42559 * 5 4 3 8 8 C 1.53082 * 109.54014 * 341.65020 * 7 5 4 9 9 C 1.53211 * 108.76351 * 46.83388 * 8 7 5 10 10 C 1.52740 * 117.83143 * 149.50555 * 9 8 7 11 11 C 1.52774 * 117.80839 * 80.49801 * 9 8 7 12 12 C 1.52477 * 122.92038 * 179.40281 * 4 3 2 13 13 H 1.09000 * 109.73235 * 47.40498 * 12 4 3 14 14 C 1.50702 * 109.72541 * 286.77567 * 12 4 3 15 15 H 1.08000 * 119.99997 * 295.21276 * 14 12 4 16 16 C 1.37882 * 119.99966 * 115.21774 * 14 12 4 17 17 N 1.31515 * 119.99800 * 5.75012 * 16 14 12 18 18 Si 1.86801 * 119.99987 * 185.75349 * 16 14 12 19 19 H 1.48500 * 109.46938 * 89.99931 * 18 16 14 20 20 H 1.48501 * 109.46939 * 209.99850 * 18 16 14 21 21 H 1.48499 * 109.46781 * 329.99764 * 18 16 14 22 22 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47468 * 299.98205 * 1 2 3 24 24 H 1.09001 * 109.47351 * 59.98237 * 1 2 3 25 25 H 1.07998 * 122.15621 * 0.10752 * 3 2 1 26 26 H 1.09000 * 109.46001 * 221.63602 * 7 5 4 27 27 H 1.08996 * 109.45214 * 101.67038 * 7 5 4 28 28 H 1.09000 * 109.61238 * 166.65525 * 8 7 5 29 29 H 1.08993 * 109.61598 * 287.00900 * 8 7 5 30 30 H 1.09002 * 117.50814 * 359.70823 * 10 9 8 31 31 H 1.09002 * 117.50320 * 144.75920 * 10 9 8 32 32 H 1.09002 * 117.50386 * 215.26852 * 11 9 8 33 33 H 1.08995 * 117.50652 * 0.30885 * 11 9 8 34 34 H 0.96997 * 119.99781 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2729 1.0853 0.0000 4 6 3.6465 0.8546 -0.0020 5 6 3.9787 -0.4488 0.0034 6 16 2.5199 -1.4351 0.0006 7 6 5.3876 -1.0031 0.0119 8 6 6.3676 0.0823 -0.4406 9 6 6.0457 1.3799 0.3077 10 6 7.1977 2.3393 0.5999 11 6 6.5690 1.5280 1.7353 12 6 4.6757 1.9795 -0.0157 13 1 4.4141 2.7268 0.7335 14 6 4.7128 2.6185 -1.3801 15 1 5.0410 2.0466 -2.2354 16 6 4.3279 3.9332 -1.5363 17 7 4.0369 4.6630 -0.4816 18 14 4.2196 4.6779 -3.2461 19 1 2.8530 4.4727 -3.7897 20 1 4.5096 6.1324 -3.1717 21 1 5.2102 4.0204 -4.1358 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5135 0.8901 24 1 -0.3634 0.5141 -0.8898 25 1 1.8574 2.0821 0.0017 26 1 5.4477 -1.8528 -0.6682 27 1 5.6443 -1.3266 1.0206 28 1 7.3876 -0.2277 -0.2131 29 1 6.2650 0.2437 -1.5136 30 1 8.1930 2.0479 0.2642 31 1 6.9840 3.4076 0.5662 32 1 5.9416 2.0628 2.4485 33 1 7.1501 0.7027 2.1466 34 1 3.7657 5.5877 -0.5915 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260429644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:08 Heat of formation + Delta-G solvation = 34.679350 kcal Electronic energy + Delta-G solvation = -16174.044381 eV Core-core repulsion = 13777.183869 eV Total energy + Delta-G solvation = -2396.860512 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.81654 -36.20995 -32.86564 -32.81868 -30.27755 -28.13441 -25.61605 -24.07716 -22.08122 -21.31325 -21.07197 -18.39458 -17.01750 -16.25321 -15.80188 -14.77245 -14.56979 -13.91768 -13.55216 -13.34839 -13.11229 -12.62279 -12.29941 -12.18789 -11.73217 -11.49987 -11.37884 -10.99995 -10.89547 -10.71005 -10.60840 -10.47100 -10.23344 -10.01609 -9.79226 -9.18055 -9.02358 -8.54163 -8.44033 -7.61379 -7.29818 -6.07702 -4.09196 1.85351 2.40733 2.78989 3.27605 3.34676 3.37871 3.76172 4.39428 4.80616 5.22309 5.36209 5.51492 5.59494 5.66101 5.76517 5.87987 5.91123 5.96816 6.05314 6.16750 6.31546 6.32657 6.41029 6.56022 6.65423 6.76384 6.77601 6.94135 7.04978 7.10545 7.17343 7.49466 7.65277 7.78614 7.87832 8.33913 8.99319 9.51935 10.98838 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.010826 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.746016 B = 2585.800980 C = 3616.691542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.197 4.197 3 C -0.102 4.102 4 C -0.043 4.043 5 C -0.202 4.202 6 S 0.005 5.995 7 C -0.030 4.030 8 C -0.072 4.072 9 C -0.091 4.091 10 C -0.162 4.162 11 C -0.195 4.195 12 C 0.120 3.880 13 H 0.083 0.917 14 C -0.489 4.489 15 H 0.055 0.945 16 C 0.069 3.931 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.134 0.866 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.815 -8.060 2.123 8.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.313 4.313 3 C -0.133 4.133 4 C -0.055 4.055 5 C -0.317 4.317 6 S 0.269 5.731 7 C -0.070 4.070 8 C -0.111 4.111 9 C -0.091 4.091 10 C -0.199 4.199 11 C -0.232 4.232 12 C 0.099 3.901 13 H 0.101 0.899 14 C -0.527 4.527 15 H 0.073 0.927 16 C -0.134 4.134 17 N -0.529 5.529 18 Si 0.717 3.283 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.152 0.848 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.202 -9.449 2.177 9.771 hybrid contribution 0.104 1.943 -0.990 2.183 sum -1.098 -7.507 1.187 7.679 Atomic orbital electron populations 1.20191 0.88903 1.01659 1.02283 1.23911 0.98813 0.95390 1.13233 1.20084 0.93283 0.98854 1.01078 1.20527 0.95045 0.94475 0.95416 1.24337 0.96378 0.95320 1.15701 1.83573 0.99251 1.11654 1.78580 1.19995 0.89284 0.97221 1.00462 1.21026 0.96327 0.93110 1.00611 1.21581 0.97592 0.95616 0.94344 1.22716 0.96291 0.98630 1.02307 1.22969 1.04917 1.02741 0.92611 1.17749 0.84317 0.89331 0.98710 0.89918 1.20856 1.43340 0.95663 0.92875 0.92668 1.24947 0.94745 0.97079 0.96585 1.69886 1.46116 1.08374 1.28514 0.86632 0.78561 0.78263 0.84859 1.20616 1.21245 1.19779 0.92345 0.91359 0.91291 0.84799 0.92194 0.91782 0.92879 0.91079 0.90653 0.88556 0.89725 0.90668 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.37 36.00 0.37 -0.67 16 2 C -0.20 -3.69 6.48 -36.17 -0.23 -3.93 16 3 C -0.10 -2.22 9.83 -41.05 -0.40 -2.62 16 4 C -0.04 -0.98 5.09 -104.67 -0.53 -1.51 16 5 C -0.20 -4.07 6.34 -35.28 -0.22 -4.30 16 6 S 0.01 0.09 23.29 -107.50 -2.50 -2.41 16 7 C -0.03 -0.53 6.24 -27.49 -0.17 -0.70 16 8 C -0.07 -1.33 5.60 -26.58 -0.15 -1.48 16 9 C -0.09 -1.89 1.25 -154.65 -0.19 -2.09 16 10 C -0.16 -3.23 9.89 -26.83 -0.27 -3.49 16 11 C -0.20 -3.67 9.94 -26.82 -0.27 -3.94 16 12 C 0.12 2.88 2.45 -92.04 -0.23 2.66 16 13 H 0.08 2.23 6.85 -51.93 -0.36 1.87 16 14 C -0.49 -12.85 8.05 -34.44 -0.28 -13.12 16 15 H 0.06 1.48 7.45 -52.49 -0.39 1.09 16 16 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 17 N -0.89 -24.53 12.63 55.43 0.70 -23.83 16 18 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.13 3.02 8.06 -52.49 -0.42 2.60 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.85 8.11 -51.93 -0.42 0.43 16 29 H 0.07 1.41 7.66 -51.93 -0.40 1.01 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.10 2.12 8.14 -51.93 -0.42 1.70 16 32 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 293.45 15.07 4.42 4.42 Total: -1.00 -27.12 293.45 -10.00 -37.11 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -4.93 Total: 2.29 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: -2.66 Total: -33.46 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.70 Total: -23.83 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.50 Total: -2.41 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.12 -10.00 -37.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.791 kcal (2) G-P(sol) polarization free energy of solvation -27.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds