Wall clock time and date at job start Mon Mar 30 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32837 * 125.21434 * 2 1 4 4 C 1.39285 * 115.68085 * 180.09300 * 3 2 1 5 5 C 1.34510 * 113.82965 * 359.67172 * 4 3 2 6 6 S 1.75663 * 125.21573 * 179.97438 * 2 1 3 7 7 C 1.51406 * 125.77312 * 180.42559 * 5 4 3 8 8 C 1.53082 * 109.54014 * 341.65020 * 7 5 4 9 9 C 1.53211 * 108.76351 * 46.83388 * 8 7 5 10 10 C 1.52740 * 117.83143 * 149.50555 * 9 8 7 11 11 C 1.52774 * 117.80839 * 80.49801 * 9 8 7 12 12 C 1.52477 * 122.92038 * 179.40281 * 4 3 2 13 13 H 1.09000 * 109.73235 * 47.40498 * 12 4 3 14 14 C 1.50702 * 109.72541 * 286.77567 * 12 4 3 15 15 H 1.08000 * 119.99997 * 295.21276 * 14 12 4 16 16 C 1.37882 * 119.99966 * 115.21774 * 14 12 4 17 17 N 1.31515 * 119.99800 * 5.75012 * 16 14 12 18 18 Si 1.86801 * 119.99987 * 185.75349 * 16 14 12 19 19 H 1.48500 * 109.46938 * 89.99931 * 18 16 14 20 20 H 1.48501 * 109.46939 * 209.99850 * 18 16 14 21 21 H 1.48499 * 109.46781 * 329.99764 * 18 16 14 22 22 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47468 * 299.98205 * 1 2 3 24 24 H 1.09001 * 109.47351 * 59.98237 * 1 2 3 25 25 H 1.07998 * 122.15621 * 0.10752 * 3 2 1 26 26 H 1.09000 * 109.46001 * 221.63602 * 7 5 4 27 27 H 1.08996 * 109.45214 * 101.67038 * 7 5 4 28 28 H 1.09000 * 109.61238 * 166.65525 * 8 7 5 29 29 H 1.08993 * 109.61598 * 287.00900 * 8 7 5 30 30 H 1.09002 * 117.50814 * 359.70823 * 10 9 8 31 31 H 1.09002 * 117.50320 * 144.75920 * 10 9 8 32 32 H 1.09002 * 117.50386 * 215.26852 * 11 9 8 33 33 H 1.08995 * 117.50652 * 0.30885 * 11 9 8 34 34 H 0.96997 * 119.99781 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2729 1.0853 0.0000 4 6 3.6465 0.8546 -0.0020 5 6 3.9787 -0.4488 0.0034 6 16 2.5199 -1.4351 0.0006 7 6 5.3876 -1.0031 0.0119 8 6 6.3676 0.0823 -0.4406 9 6 6.0457 1.3799 0.3077 10 6 7.1977 2.3393 0.5999 11 6 6.5690 1.5280 1.7353 12 6 4.6757 1.9795 -0.0157 13 1 4.4141 2.7268 0.7335 14 6 4.7128 2.6185 -1.3801 15 1 5.0410 2.0466 -2.2354 16 6 4.3279 3.9332 -1.5363 17 7 4.0369 4.6630 -0.4816 18 14 4.2196 4.6779 -3.2461 19 1 2.8530 4.4727 -3.7897 20 1 4.5096 6.1324 -3.1717 21 1 5.2102 4.0204 -4.1358 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5135 0.8901 24 1 -0.3634 0.5141 -0.8898 25 1 1.8574 2.0821 0.0017 26 1 5.4477 -1.8528 -0.6682 27 1 5.6443 -1.3266 1.0206 28 1 7.3876 -0.2277 -0.2131 29 1 6.2650 0.2437 -1.5136 30 1 8.1930 2.0479 0.2642 31 1 6.9840 3.4076 0.5662 32 1 5.9416 2.0628 2.4485 33 1 7.1501 0.7027 2.1466 34 1 3.7657 5.5877 -0.5915 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260429644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:07 Heat of formation + Delta-G solvation = 22.668883 kcal Electronic energy + Delta-G solvation = -16174.565194 eV Core-core repulsion = 13777.183869 eV Total energy + Delta-G solvation = -2397.381325 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41284 -37.76340 -34.82769 -34.28384 -31.76962 -29.88373 -27.07046 -25.96461 -23.62236 -22.90148 -22.60131 -19.99145 -18.82915 -17.89582 -17.48165 -16.55167 -16.22629 -15.43081 -15.10677 -14.86584 -14.46105 -14.24574 -13.87653 -13.73883 -13.20691 -13.12984 -12.97635 -12.83074 -12.56474 -12.30934 -12.19614 -12.06065 -11.86127 -11.58379 -11.54097 -10.94732 -10.76693 -10.44784 -10.08989 -9.10753 -8.87835 -8.08911 -6.17326 0.30173 0.92389 1.22180 1.37701 1.39138 1.48124 2.08800 2.43996 3.14717 3.28337 3.89490 4.05907 4.14553 4.28780 4.39136 4.48267 4.51684 4.57895 4.74277 4.78347 4.90451 4.90495 5.01645 5.08082 5.09301 5.21067 5.28075 5.40995 5.43744 5.48898 5.51741 5.71056 5.82881 5.90346 6.12350 6.36881 6.95914 7.45446 8.95483 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.010826 C = 0.007740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.746016 B = 2585.800980 C = 3616.691542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.191 4.191 3 C -0.142 4.142 4 C -0.079 4.079 5 C -0.209 4.209 6 S 0.071 5.929 7 C -0.031 4.031 8 C -0.066 4.066 9 C -0.109 4.109 10 C -0.167 4.167 11 C -0.175 4.175 12 C 0.120 3.880 13 H 0.037 0.963 14 C -0.493 4.493 15 H 0.044 0.956 16 C 0.022 3.978 17 N -0.923 5.923 18 Si 0.943 3.057 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.268 1.268 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 -10.997 1.931 11.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.308 4.308 3 C -0.173 4.173 4 C -0.090 4.090 5 C -0.325 4.325 6 S 0.336 5.664 7 C -0.070 4.070 8 C -0.105 4.105 9 C -0.109 4.109 10 C -0.204 4.204 11 C -0.212 4.212 12 C 0.099 3.901 13 H 0.056 0.944 14 C -0.532 4.532 15 H 0.063 0.937 16 C -0.177 4.177 17 N -0.563 5.563 18 Si 0.769 3.231 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.192 1.192 22 H 0.102 0.898 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.124 0.876 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.904 -12.393 1.979 12.583 hybrid contribution -0.050 2.771 -0.883 2.908 sum -0.954 -9.623 1.096 9.732 Atomic orbital electron populations 1.20347 0.86033 1.03587 1.03207 1.24445 1.00933 0.95212 1.10185 1.19988 0.93805 0.98701 1.04810 1.20388 0.94978 0.95203 0.98445 1.24774 0.98964 0.95150 1.13637 1.83268 0.96805 1.09373 1.76975 1.20143 0.87202 0.97345 1.02287 1.20999 0.98488 0.92008 0.98964 1.21548 0.95911 0.97037 0.96432 1.22684 0.97452 0.96753 1.03560 1.22969 1.03953 1.02890 0.91345 1.17489 0.87072 0.89365 0.96171 0.94434 1.21060 1.42572 0.95804 0.93740 0.93734 1.25589 0.94960 0.97647 0.99493 1.70018 1.47712 1.08428 1.30126 0.85787 0.78440 0.77595 0.81291 1.20521 1.20931 1.19233 0.89814 0.90149 0.90651 0.87620 0.89715 0.89667 0.89581 0.93042 0.87855 0.92068 0.91339 0.87086 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.98 10.37 71.23 0.74 -1.24 16 2 C -0.19 -6.93 6.48 24.51 0.16 -6.77 16 3 C -0.14 -6.37 9.83 21.34 0.21 -6.16 16 4 C -0.08 -3.63 5.09 -19.89 -0.10 -3.73 16 5 C -0.21 -8.09 6.34 25.06 0.16 -7.93 16 6 S 0.07 2.34 23.29 -56.49 -1.32 1.02 16 7 C -0.03 -0.97 6.24 30.10 0.19 -0.78 16 8 C -0.07 -2.28 5.60 30.69 0.17 -2.11 16 9 C -0.11 -4.52 1.25 -52.27 -0.07 -4.58 16 10 C -0.17 -6.65 9.89 30.53 0.30 -6.35 16 11 C -0.17 -6.39 9.94 30.54 0.30 -6.08 16 12 C 0.12 6.03 2.45 -11.71 -0.03 6.00 16 13 H 0.04 2.18 6.85 -2.39 -0.02 2.16 16 14 C -0.49 -27.03 8.05 25.60 0.21 -26.82 16 15 H 0.04 2.47 7.45 -2.91 -0.02 2.45 16 16 C 0.02 1.20 5.45 84.66 0.46 1.66 16 17 N -0.92 -53.84 12.63 21.45 0.27 -53.57 16 18 Si 0.94 44.22 29.54 68.60 2.03 46.25 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 24 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 26 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.09 2.41 8.11 -2.39 -0.02 2.39 16 29 H 0.05 1.97 7.66 -2.39 -0.02 1.95 16 30 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -61.59 293.45 4.76 -56.82 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.08 Total: 14.38 kcal Atomic # 6 Polarization: -67.60 SS G_CDS: 2.70 Total: -64.90 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.27 Total: -53.57 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.32 Total: 1.02 kcal Total: -61.59 4.76 -56.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260429644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.493 kcal (2) G-P(sol) polarization free energy of solvation -61.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds