Wall clock time and date at job start Mon Mar 30 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35131 * 126.41127 * 2 1 4 4 C 1.50698 * 125.69335 * 0.23636 * 3 2 1 5 5 H 1.09005 * 109.47538 * 359.70705 * 4 3 2 6 6 C 1.52998 * 109.47697 * 119.71082 * 4 3 2 7 7 C 1.50704 * 109.47179 * 239.71411 * 4 3 2 8 8 H 1.07997 * 119.99580 * 359.97438 * 7 4 3 9 9 C 1.37874 * 120.00285 * 180.02562 * 7 4 3 10 10 N 1.31520 * 119.99977 * 359.97438 * 9 7 4 11 11 Si 1.86794 * 120.00154 * 179.97438 * 9 7 4 12 12 H 1.48499 * 109.47293 * 59.99611 * 11 9 7 13 13 H 1.48500 * 109.47292 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47190 * 299.99820 * 11 9 7 15 15 N 1.33484 * 108.61352 * 179.97438 * 3 2 1 16 16 C 1.32564 * 109.15117 * 0.02562 * 15 3 2 17 17 C 1.41132 * 132.32036 * 179.97438 * 16 15 3 18 18 F 1.35102 * 120.35624 * 0.02562 * 17 16 15 19 19 C 1.36197 * 119.28696 * 179.97438 * 17 16 15 20 20 C 1.40474 * 119.67453 * 0.02752 * 19 17 16 21 21 C 1.34923 * 120.32101 * 359.94950 * 20 19 17 22 22 N 1.36571 * 120.65166 * 0.04584 * 21 20 19 23 23 H 1.08992 * 109.47265 * 89.99475 * 1 2 3 24 24 H 1.09002 * 109.46953 * 210.00107 * 1 2 3 25 25 H 1.08999 * 109.46864 * 329.99309 * 1 2 3 26 26 H 1.09007 * 109.47190 * 59.99717 * 6 4 3 27 27 H 1.08998 * 109.48002 * 179.97438 * 6 4 3 28 28 H 1.09009 * 109.46950 * 300.00241 * 6 4 3 29 29 H 0.96999 * 120.00115 * 180.02562 * 10 9 7 30 30 H 1.07999 * 120.15954 * 180.02562 * 19 17 16 31 31 H 1.07994 * 119.84318 * 179.97438 * 20 19 17 32 32 H 1.08000 * 119.67533 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3091 1.0875 0.0000 4 6 1.8461 2.5216 0.0050 5 1 0.7564 2.5516 0.0035 6 6 2.3738 3.2236 1.2578 7 6 2.3695 3.2228 -1.2219 8 1 2.9771 2.6840 -1.9338 9 6 2.0736 4.5525 -1.4350 10 7 1.3341 5.2088 -0.5677 11 14 2.7231 5.4218 -2.9554 12 1 2.2109 4.7409 -4.1717 13 1 2.2677 6.8353 -2.9499 14 1 4.2075 5.3805 -2.9531 15 7 3.5801 0.6795 0.0006 16 6 3.6114 -0.6458 0.0004 17 6 4.6771 -1.5711 0.0003 18 9 5.9569 -1.1384 0.0009 19 6 4.4013 -2.9048 0.0006 20 6 3.0653 -3.3388 0.0004 21 6 2.0577 -2.4415 0.0010 22 7 2.3190 -1.1011 0.0008 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 3.4634 3.1937 1.2594 27 1 2.0393 4.2610 1.2613 28 1 1.9951 2.7164 2.1453 29 1 1.1257 6.1441 -0.7178 30 1 5.2059 -3.6252 0.0010 31 1 2.8436 -4.3957 0.0003 32 1 1.0343 -2.7867 0.0012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260459737.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:39 Heat of formation + Delta-G solvation = 34.849708 kcal Electronic energy + Delta-G solvation = -17708.733593 eV Core-core repulsion = 14777.960043 eV Total energy + Delta-G solvation = -2930.773550 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.76125 -42.40218 -37.30933 -34.14468 -33.26490 -31.43971 -29.92953 -28.94846 -26.24574 -25.05895 -23.34088 -22.50689 -21.25041 -19.20352 -17.54723 -17.23585 -16.44429 -16.07548 -15.57536 -15.46299 -14.79905 -14.60197 -13.95224 -13.17906 -12.92463 -12.73342 -12.66874 -12.22458 -12.00959 -11.78156 -11.68374 -11.26860 -10.85020 -10.71077 -10.42022 -10.31481 -10.05812 -9.85540 -9.28240 -8.95214 -8.31891 -8.02470 -7.34625 -5.95347 -3.99430 0.81014 1.44890 2.78519 3.27518 3.37937 3.41166 3.46690 3.82275 4.13872 4.44333 4.51169 4.65710 4.81034 5.12131 5.35851 5.41190 5.53775 5.74374 5.82255 5.89364 5.98355 6.07591 6.23951 6.44000 6.74728 6.92149 7.02532 7.21697 7.38289 7.40943 7.71850 7.93388 8.13936 8.38820 8.57923 9.01107 9.63544 11.10856 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027482 B = 0.006796 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.600362 B = 4119.091610 C = 4594.767231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.077 4.077 3 C 0.123 3.877 4 C 0.111 3.889 5 H 0.046 0.954 6 C -0.130 4.130 7 C -0.496 4.496 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 N -0.452 5.452 16 C 0.165 3.835 17 C 0.151 3.849 18 F -0.117 7.117 19 C -0.160 4.160 20 C -0.138 4.138 21 C 0.052 3.948 22 N -0.353 5.353 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.035 0.965 27 H 0.087 0.913 28 H 0.005 0.995 29 H 0.261 0.739 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -16.274 2.157 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.188 4.188 3 C -0.010 4.010 4 C 0.091 3.909 5 H 0.064 0.936 6 C -0.188 4.188 7 C -0.535 4.535 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.202 1.202 15 N -0.171 5.171 16 C -0.077 4.077 17 C 0.129 3.871 18 F -0.095 7.095 19 C -0.184 4.184 20 C -0.160 4.160 21 C -0.070 4.070 22 N -0.028 5.028 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.106 0.894 28 H 0.024 0.976 29 H 0.071 0.929 30 H 0.164 0.836 31 H 0.170 0.830 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.260 -15.519 2.189 15.675 hybrid contribution 0.025 -0.105 -0.872 0.879 sum -0.235 -15.624 1.317 15.681 Atomic orbital electron populations 1.20132 0.86453 1.02903 1.02645 1.21254 0.94653 0.84369 1.18506 1.21902 0.86567 0.97496 0.94988 1.17464 0.96114 0.81629 0.95644 0.93642 1.21725 0.99504 1.03076 0.94454 1.20956 1.31789 0.95202 1.05544 0.92565 1.24902 0.95146 0.97225 0.96652 1.69864 1.38073 1.10045 1.35326 0.86608 0.79506 0.78349 0.83274 1.20397 1.21275 1.20212 1.70800 1.22802 1.04142 1.19374 1.20675 0.83980 0.91729 1.11335 1.16185 0.77268 0.90109 1.03524 1.91532 1.33915 1.90644 1.93424 1.20839 0.98286 0.93144 1.06148 1.20363 0.90709 0.99783 1.05161 1.21554 1.01242 0.80957 1.03268 1.42521 1.08065 1.05365 1.46848 0.91081 0.92635 0.89176 0.94595 0.89402 0.97604 0.92920 0.83599 0.83046 0.82219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 9.94 36.01 0.36 -0.59 16 2 C -0.08 -1.49 7.03 -81.48 -0.57 -2.07 16 3 C 0.12 2.92 5.50 -82.98 -0.46 2.46 16 4 C 0.11 2.87 2.65 -92.92 -0.25 2.62 16 5 H 0.05 1.18 6.77 -51.93 -0.35 0.83 16 6 C -0.13 -3.31 8.95 37.16 0.33 -2.97 16 7 C -0.50 -14.19 8.55 -34.44 -0.29 -14.48 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 10 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 11 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 N -0.45 -10.99 11.32 -8.97 -0.10 -11.09 16 16 C 0.17 3.37 7.80 -156.02 -1.22 2.15 16 17 C 0.15 2.56 7.34 -39.22 -0.29 2.28 16 18 F -0.12 -2.07 17.28 2.25 0.04 -2.03 16 19 C -0.16 -1.96 10.04 -39.47 -0.40 -2.36 16 20 C -0.14 -1.44 9.98 -39.92 -0.40 -1.84 16 21 C 0.05 0.65 10.85 -16.62 -0.18 0.47 16 22 N -0.35 -6.23 2.95 -58.40 -0.17 -6.40 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.39 7.13 -51.93 -0.37 1.02 16 26 H 0.03 0.94 8.14 -51.92 -0.42 0.51 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 28 H 0.00 0.11 8.14 -51.92 -0.42 -0.31 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 280.42 15.07 4.23 4.23 Total: -1.00 -32.45 280.42 -7.39 -39.85 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -3.54 Total: -3.97 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.45 Total: -12.70 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.35 Total: -42.35 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.45 -7.39 -39.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459737.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.695 kcal (2) G-P(sol) polarization free energy of solvation -32.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds