Wall clock time and date at job start Mon Mar 30 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35131 * 126.41127 * 2 1 4 4 C 1.50698 * 125.69335 * 0.23636 * 3 2 1 5 5 H 1.09005 * 109.47538 * 359.70705 * 4 3 2 6 6 C 1.52998 * 109.47697 * 119.71082 * 4 3 2 7 7 C 1.50704 * 109.47179 * 239.71411 * 4 3 2 8 8 H 1.07997 * 119.99580 * 359.97438 * 7 4 3 9 9 C 1.37874 * 120.00285 * 180.02562 * 7 4 3 10 10 N 1.31520 * 119.99977 * 359.97438 * 9 7 4 11 11 Si 1.86794 * 120.00154 * 179.97438 * 9 7 4 12 12 H 1.48499 * 109.47293 * 59.99611 * 11 9 7 13 13 H 1.48500 * 109.47292 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47190 * 299.99820 * 11 9 7 15 15 N 1.33484 * 108.61352 * 179.97438 * 3 2 1 16 16 C 1.32564 * 109.15117 * 0.02562 * 15 3 2 17 17 C 1.41132 * 132.32036 * 179.97438 * 16 15 3 18 18 F 1.35102 * 120.35624 * 0.02562 * 17 16 15 19 19 C 1.36197 * 119.28696 * 179.97438 * 17 16 15 20 20 C 1.40474 * 119.67453 * 0.02752 * 19 17 16 21 21 C 1.34923 * 120.32101 * 359.94950 * 20 19 17 22 22 N 1.36571 * 120.65166 * 0.04584 * 21 20 19 23 23 H 1.08992 * 109.47265 * 89.99475 * 1 2 3 24 24 H 1.09002 * 109.46953 * 210.00107 * 1 2 3 25 25 H 1.08999 * 109.46864 * 329.99309 * 1 2 3 26 26 H 1.09007 * 109.47190 * 59.99717 * 6 4 3 27 27 H 1.08998 * 109.48002 * 179.97438 * 6 4 3 28 28 H 1.09009 * 109.46950 * 300.00241 * 6 4 3 29 29 H 0.96999 * 120.00115 * 180.02562 * 10 9 7 30 30 H 1.07999 * 120.15954 * 180.02562 * 19 17 16 31 31 H 1.07994 * 119.84318 * 179.97438 * 20 19 17 32 32 H 1.08000 * 119.67533 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3091 1.0875 0.0000 4 6 1.8461 2.5216 0.0050 5 1 0.7564 2.5516 0.0035 6 6 2.3738 3.2236 1.2578 7 6 2.3695 3.2228 -1.2219 8 1 2.9771 2.6840 -1.9338 9 6 2.0736 4.5525 -1.4350 10 7 1.3341 5.2088 -0.5677 11 14 2.7231 5.4218 -2.9554 12 1 2.2109 4.7409 -4.1717 13 1 2.2677 6.8353 -2.9499 14 1 4.2075 5.3805 -2.9531 15 7 3.5801 0.6795 0.0006 16 6 3.6114 -0.6458 0.0004 17 6 4.6771 -1.5711 0.0003 18 9 5.9569 -1.1384 0.0009 19 6 4.4013 -2.9048 0.0006 20 6 3.0653 -3.3388 0.0004 21 6 2.0577 -2.4415 0.0010 22 7 2.3190 -1.1011 0.0008 23 1 -0.3633 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 3.4634 3.1937 1.2594 27 1 2.0393 4.2610 1.2613 28 1 1.9951 2.7164 2.1453 29 1 1.1257 6.1441 -0.7178 30 1 5.2059 -3.6252 0.0010 31 1 2.8436 -4.3957 0.0003 32 1 1.0343 -2.7867 0.0012 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260459737.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:38 Heat of formation + Delta-G solvation = 15.192696 kcal Electronic energy + Delta-G solvation = -17709.585985 eV Core-core repulsion = 14777.960043 eV Total energy + Delta-G solvation = -2931.625942 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.98677 -43.75506 -38.58264 -36.05031 -34.59688 -33.19678 -31.36306 -30.32461 -27.50072 -27.22508 -24.88196 -23.78708 -22.67033 -20.85503 -18.87081 -18.49267 -18.21661 -17.39025 -17.14417 -16.72265 -16.37590 -16.12049 -15.22507 -14.75538 -14.58287 -14.20147 -13.81759 -13.65240 -13.48556 -13.12116 -13.04811 -12.87228 -12.86711 -12.50101 -12.26011 -12.18212 -11.78819 -11.55286 -11.11352 -10.78205 -10.48445 -9.45904 -8.64596 -8.10887 -6.22318 -0.29825 0.25533 1.37530 1.40591 1.48095 1.55252 1.96834 2.39984 2.47352 2.96824 3.15165 3.30200 3.70259 3.82640 3.98543 4.19470 4.32815 4.58916 4.68478 4.74911 4.85744 4.92961 4.97828 5.04876 5.08932 5.17360 5.26551 5.52084 5.58974 5.69257 5.82445 6.02347 6.17939 6.36510 6.79989 7.04749 7.43068 8.93755 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027482 B = 0.006796 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.600362 B = 4119.091610 C = 4594.767231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.076 4.076 3 C 0.073 3.927 4 C 0.113 3.887 5 H 0.037 0.963 6 C -0.115 4.115 7 C -0.517 4.517 8 H 0.032 0.968 9 C 0.020 3.980 10 N -0.912 5.912 11 Si 0.952 3.048 12 H -0.271 1.271 13 H -0.272 1.272 14 H -0.283 1.283 15 N -0.523 5.523 16 C 0.152 3.848 17 C 0.090 3.910 18 F -0.135 7.135 19 C -0.109 4.109 20 C -0.120 4.120 21 C 0.044 3.956 22 N -0.352 5.352 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.013 0.987 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.265 0.735 30 H 0.188 0.812 31 H 0.214 0.786 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.862 -20.228 1.825 20.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.188 4.188 3 C -0.059 4.059 4 C 0.094 3.906 5 H 0.055 0.945 6 C -0.173 4.173 7 C -0.555 4.555 8 H 0.050 0.950 9 C -0.179 4.179 10 N -0.551 5.551 11 Si 0.777 3.223 12 H -0.196 1.196 13 H -0.197 1.197 14 H -0.209 1.209 15 N -0.243 5.243 16 C -0.092 4.092 17 C 0.068 3.932 18 F -0.114 7.114 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.077 4.077 22 N -0.025 5.025 23 H 0.096 0.904 24 H 0.117 0.883 25 H 0.096 0.904 26 H 0.032 0.968 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.205 0.795 31 H 0.230 0.770 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.291 -19.483 1.860 19.614 hybrid contribution 0.384 0.824 -0.738 1.171 sum -0.907 -18.659 1.122 18.715 Atomic orbital electron populations 1.20225 0.83492 1.04388 1.03519 1.21519 0.96097 0.83956 1.17185 1.21514 0.87737 0.97416 0.99189 1.17207 0.95312 0.83808 0.94271 0.94478 1.21526 0.97885 1.02123 0.95737 1.21116 1.31971 0.95949 1.06506 0.95003 1.25586 0.95318 0.97652 0.99346 1.69951 1.38451 1.10311 1.36424 0.85718 0.78384 0.77918 0.80243 1.19642 1.19711 1.20875 1.70570 1.23813 1.07158 1.22797 1.21122 0.86155 0.91164 1.10745 1.16663 0.76259 0.91432 1.08852 1.91474 1.34652 1.91061 1.94165 1.21562 1.00763 0.91437 0.99532 1.21192 0.88870 1.02263 1.01680 1.22637 1.04476 0.78639 1.01898 1.42655 1.06581 1.07005 1.46298 0.90371 0.88337 0.90440 0.96775 0.91311 0.95808 0.92598 0.79464 0.76970 0.77695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.66 9.94 71.24 0.71 -0.96 16 2 C -0.08 -2.94 7.03 41.07 0.29 -2.65 16 3 C 0.07 3.64 5.50 41.59 0.23 3.87 16 4 C 0.11 6.22 2.65 -12.29 -0.03 6.19 16 5 H 0.04 2.04 6.77 -2.38 -0.02 2.02 16 6 C -0.11 -6.23 8.95 71.98 0.64 -5.58 16 7 C -0.52 -31.27 8.55 25.60 0.22 -31.05 16 8 H 0.03 2.02 7.74 -2.91 -0.02 2.00 16 9 C 0.02 1.15 5.30 84.65 0.45 1.60 16 10 N -0.91 -53.60 11.32 21.45 0.24 -53.36 16 11 Si 0.95 46.41 29.54 68.60 2.03 48.43 16 12 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 15 N -0.52 -27.04 11.32 -182.29 -2.06 -29.11 16 16 C 0.15 6.30 7.80 134.17 1.05 7.35 16 17 C 0.09 2.98 7.34 22.51 0.17 3.14 16 18 F -0.13 -4.92 17.28 44.97 0.78 -4.14 16 19 C -0.11 -2.15 10.04 22.34 0.22 -1.93 16 20 C -0.12 -1.67 9.98 22.05 0.22 -1.45 16 21 C 0.04 0.86 10.85 83.19 0.90 1.77 16 22 N -0.35 -11.84 2.95 -338.69 -1.00 -12.83 16 23 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.08 2.39 7.13 -2.39 -0.02 2.37 16 26 H 0.01 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 28 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.21 0.55 8.06 -2.91 -0.02 0.53 16 32 H 0.21 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -79.32 280.42 6.18 -73.13 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: 1.13 Total: -2.43 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 5.06 Total: -19.69 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -2.82 Total: -95.30 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.78 Total: -4.14 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -79.32 6.18 -73.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459737.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.327 kcal (2) G-P(sol) polarization free energy of solvation -79.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds