Wall clock time and date at job start Mon Mar 30 2020 06:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99847 * 2 1 4 4 H 1.48501 * 109.46888 * 239.99999 * 3 2 1 5 5 H 1.48492 * 109.46864 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47248 * 120.00184 * 3 2 1 7 7 C 1.37873 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00355 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99793 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.35902 * 116.99972 * 179.97438 * 10 9 7 12 12 C 1.38760 * 120.05366 * 0.21370 * 11 10 9 13 13 C 1.38118 * 119.94038 * 180.27255 * 12 11 10 14 14 C 1.38289 * 120.05804 * 359.76827 * 13 12 11 15 15 C 1.38244 * 120.11179 * 359.97438 * 14 13 12 16 16 C 1.38159 * 120.05441 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.03071 * 179.97438 * 16 15 14 18 18 H 1.08999 * 110.91260 * 182.13273 * 17 16 15 19 19 C 1.55312 * 110.84792 * 305.71981 * 17 16 15 20 20 C 1.54951 * 100.94225 * 152.31864 * 19 17 16 21 21 O 1.43641 * 105.13632 * 323.55537 * 20 19 17 22 22 C 1.43245 * 109.97171 * 24.42677 * 21 20 19 23 23 H 0.97003 * 119.99755 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46865 * 60.00293 * 9 7 2 25 25 H 1.08988 * 109.47298 * 299.99889 * 9 7 2 26 26 H 1.07994 * 120.02859 * 0.02562 * 12 11 10 27 27 H 1.08000 * 119.97238 * 179.74562 * 13 12 11 28 28 H 1.08005 * 119.94202 * 179.97438 * 14 13 12 29 29 H 1.08004 * 119.97073 * 179.97438 * 15 14 13 30 30 H 1.09000 * 111.12606 * 34.39896 * 19 17 16 31 31 H 1.09000 * 111.15931 * 270.25216 * 19 17 16 32 32 H 1.08996 * 110.30651 * 204.63910 * 20 19 17 33 33 H 1.08995 * 110.30511 * 82.46801 * 20 19 17 34 34 H 1.08996 * 109.82744 * 117.80426 * 22 21 20 35 35 H 1.09002 * 109.82692 * 238.77298 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 2.1797 -3.5852 0.0015 11 6 1.6604 -4.8411 0.0030 12 6 0.2849 -5.0242 0.0002 13 6 -0.2404 -6.3016 0.0074 14 6 0.6030 -7.3974 0.0126 15 6 1.9737 -7.2176 0.0100 16 6 2.5042 -5.9420 0.0028 17 6 3.9985 -5.7466 0.0006 18 1 4.2524 -4.6870 0.0326 19 6 4.6574 -6.5088 1.1826 20 6 6.0680 -6.7856 0.6042 21 8 5.8561 -7.0476 -0.7921 22 6 4.6399 -6.4284 -1.2271 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5574 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 -0.3742 -4.1688 -0.0036 27 1 -1.3109 -6.4447 0.0094 28 1 0.1902 -8.3955 0.0187 29 1 2.6304 -8.0751 0.0145 30 1 4.1297 -7.4390 1.3931 31 1 4.7137 -5.8819 2.0724 32 1 6.5118 -7.6550 1.0892 33 1 6.7074 -5.9123 0.7325 34 1 4.8575 -5.6833 -1.9922 35 1 3.9628 -7.1835 -1.6265 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260484669.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:32 Heat of formation + Delta-G solvation = -72.798620 kcal Electronic energy + Delta-G solvation = -17784.272737 eV Core-core repulsion = 14939.998759 eV Total energy + Delta-G solvation = -2844.273978 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.07043 -38.67774 -36.64228 -33.27231 -32.90074 -30.08418 -29.61439 -28.31475 -27.28092 -23.74877 -22.77401 -22.15090 -21.22500 -20.02117 -17.55786 -16.60935 -16.39679 -16.01906 -15.16857 -14.93934 -14.66194 -14.46938 -14.37509 -13.88517 -13.21669 -13.10373 -12.70695 -12.34975 -11.98680 -11.70378 -11.45579 -11.30493 -11.19244 -11.04062 -11.02374 -10.49200 -10.46727 -10.19442 -10.17294 -9.44915 -9.32630 -8.63242 -8.46094 -7.50223 -6.28617 -4.32738 1.64648 1.90713 3.23145 3.26424 3.29429 3.95928 4.09809 4.12343 4.48163 4.75096 4.84903 5.08535 5.10255 5.23330 5.25901 5.32693 5.41860 5.48658 5.72160 5.78475 5.82302 5.90127 5.94145 6.06078 6.09244 6.34322 6.40824 6.72012 6.81020 6.87222 6.94503 7.06896 7.10070 7.26360 7.63473 7.91083 8.41610 8.79247 9.32731 10.82521 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.006200 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.735324 B = 4515.200310 C = 5611.078506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.913 3.087 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.070 0.930 9 C 0.194 3.806 10 O -0.315 6.315 11 C 0.159 3.841 12 C -0.211 4.211 13 C -0.081 4.081 14 C -0.177 4.177 15 C -0.081 4.081 16 C -0.128 4.128 17 C -0.071 4.071 18 H 0.104 0.896 19 C -0.148 4.148 20 C 0.051 3.949 21 O -0.389 6.389 22 C 0.059 3.941 23 H 0.268 0.732 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.134 0.866 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.556 -13.210 1.164 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.739 3.261 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.088 0.912 9 C 0.121 3.879 10 O -0.227 6.227 11 C 0.111 3.889 12 C -0.229 4.229 13 C -0.099 4.099 14 C -0.196 4.196 15 C -0.099 4.099 16 C -0.128 4.128 17 C -0.090 4.090 18 H 0.122 0.878 19 C -0.186 4.186 20 C -0.026 4.026 21 O -0.309 6.309 22 C -0.018 4.018 23 H 0.078 0.922 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.151 0.849 27 H 0.136 0.864 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.731 -13.102 1.029 13.968 hybrid contribution -0.264 1.136 0.161 1.177 sum 4.467 -11.966 1.191 12.828 Atomic orbital electron populations 1.69938 1.06136 1.27759 1.49390 1.24927 0.95039 0.99525 0.94620 0.86312 0.79307 0.81433 0.79011 1.19827 1.20947 1.19842 1.20921 0.94196 0.88737 1.52469 0.91219 1.20643 0.88647 0.81741 0.96855 1.86089 1.39028 1.11703 1.85921 1.19070 0.91366 0.86267 0.92220 1.21466 0.94664 0.98640 1.08166 1.20911 0.99337 0.92071 0.97572 1.20831 0.93335 0.98315 1.07102 1.20681 0.95018 0.95430 0.98753 1.18823 0.93556 0.91323 1.09134 1.21455 0.91513 1.01975 0.94037 0.87786 1.23386 0.95412 1.01034 0.98743 1.23365 0.96728 1.00727 0.81741 1.88356 1.42067 1.75637 1.24828 1.23286 0.85505 0.96548 0.96440 0.92240 0.96094 0.96113 0.84867 0.86441 0.86667 0.86212 0.90322 0.89747 0.90037 0.92150 0.91205 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.53 -14.78 9.43 -34.44 -0.32 -15.10 16 8 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.19 5.06 4.49 36.01 0.16 5.23 16 10 O -0.31 -7.40 8.94 -19.43 -0.17 -7.57 16 11 C 0.16 3.19 6.66 -39.21 -0.26 2.93 16 12 C -0.21 -3.96 9.04 -39.43 -0.36 -4.32 16 13 C -0.08 -1.25 10.04 -39.61 -0.40 -1.65 16 14 C -0.18 -2.49 10.04 -39.56 -0.40 -2.89 16 15 C -0.08 -1.17 8.11 -39.61 -0.32 -1.49 16 16 C -0.13 -2.15 4.95 -104.48 -0.52 -2.67 16 17 C -0.07 -1.10 3.16 -89.82 -0.28 -1.38 16 18 H 0.10 1.83 7.11 -51.93 -0.37 1.46 16 19 C -0.15 -1.87 6.54 -24.48 -0.16 -2.03 16 20 C 0.05 0.61 7.78 38.19 0.30 0.90 16 21 O -0.39 -5.66 11.36 -35.23 -0.40 -6.06 16 22 C 0.06 0.84 7.31 37.88 0.28 1.12 16 23 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.02 0.57 7.65 -51.93 -0.40 0.18 16 25 H 0.02 0.57 7.67 -51.94 -0.40 0.17 16 26 H 0.13 2.64 6.30 -52.49 -0.33 2.31 16 27 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 28 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.12 1.46 7.30 -52.48 -0.38 1.07 16 30 H 0.08 0.92 6.83 -51.93 -0.35 0.57 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.97 7.03 -51.93 -0.37 0.60 16 LS Contribution 292.17 15.07 4.40 4.40 Total: -1.00 -29.37 292.17 -7.52 -36.89 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.68 Total: 0.95 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -2.38 Total: -19.75 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.74 Total: -24.92 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.57 Total: -13.64 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.37 -7.52 -36.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484669.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.909 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds