Wall clock time and date at job start Mon Mar 30 2020 06:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99847 * 2 1 4 4 H 1.48501 * 109.46888 * 239.99999 * 3 2 1 5 5 H 1.48492 * 109.46864 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47248 * 120.00184 * 3 2 1 7 7 C 1.37873 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00355 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99793 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.35902 * 116.99972 * 179.97438 * 10 9 7 12 12 C 1.38760 * 120.05366 * 0.21370 * 11 10 9 13 13 C 1.38118 * 119.94038 * 180.27255 * 12 11 10 14 14 C 1.38289 * 120.05804 * 359.76827 * 13 12 11 15 15 C 1.38244 * 120.11179 * 359.97438 * 14 13 12 16 16 C 1.38159 * 120.05441 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.03071 * 179.97438 * 16 15 14 18 18 H 1.08999 * 110.91260 * 182.13273 * 17 16 15 19 19 C 1.55312 * 110.84792 * 305.71981 * 17 16 15 20 20 C 1.54951 * 100.94225 * 152.31864 * 19 17 16 21 21 O 1.43641 * 105.13632 * 323.55537 * 20 19 17 22 22 C 1.43245 * 109.97171 * 24.42677 * 21 20 19 23 23 H 0.97003 * 119.99755 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46865 * 60.00293 * 9 7 2 25 25 H 1.08988 * 109.47298 * 299.99889 * 9 7 2 26 26 H 1.07994 * 120.02859 * 0.02562 * 12 11 10 27 27 H 1.08000 * 119.97238 * 179.74562 * 13 12 11 28 28 H 1.08005 * 119.94202 * 179.97438 * 14 13 12 29 29 H 1.08004 * 119.97073 * 179.97438 * 15 14 13 30 30 H 1.09000 * 111.12606 * 34.39896 * 19 17 16 31 31 H 1.09000 * 111.15931 * 270.25216 * 19 17 16 32 32 H 1.08996 * 110.30651 * 204.63910 * 20 19 17 33 33 H 1.08995 * 110.30511 * 82.46801 * 20 19 17 34 34 H 1.08996 * 109.82744 * 117.80426 * 22 21 20 35 35 H 1.09002 * 109.82692 * 238.77298 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 2.1797 -3.5852 0.0015 11 6 1.6604 -4.8411 0.0030 12 6 0.2849 -5.0242 0.0002 13 6 -0.2404 -6.3016 0.0074 14 6 0.6030 -7.3974 0.0126 15 6 1.9737 -7.2176 0.0100 16 6 2.5042 -5.9420 0.0028 17 6 3.9985 -5.7466 0.0006 18 1 4.2524 -4.6870 0.0326 19 6 4.6574 -6.5088 1.1826 20 6 6.0680 -6.7856 0.6042 21 8 5.8561 -7.0476 -0.7921 22 6 4.6399 -6.4284 -1.2271 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5574 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 -0.3742 -4.1688 -0.0036 27 1 -1.3109 -6.4447 0.0094 28 1 0.1902 -8.3955 0.0187 29 1 2.6304 -8.0751 0.0145 30 1 4.1297 -7.4390 1.3931 31 1 4.7137 -5.8819 2.0724 32 1 6.5118 -7.6550 1.0892 33 1 6.7074 -5.9123 0.7325 34 1 4.8575 -5.6833 -1.9922 35 1 3.9628 -7.1835 -1.6265 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260484669.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:32 Heat of formation + Delta-G solvation = -90.280352 kcal Electronic energy + Delta-G solvation = -17785.030801 eV Core-core repulsion = 14939.998759 eV Total energy + Delta-G solvation = -2845.032043 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.39316 -39.96503 -38.17062 -35.10024 -34.40052 -31.20856 -31.08033 -29.81730 -28.93486 -25.53023 -24.14044 -23.24022 -22.68675 -21.29274 -19.16678 -18.48895 -17.71729 -17.21762 -16.79329 -16.48511 -16.20560 -16.06144 -15.53809 -15.22726 -14.67737 -14.22421 -14.15976 -13.83154 -13.59071 -13.09220 -13.02048 -12.87946 -12.59994 -12.43692 -12.32417 -12.20222 -11.95406 -11.75984 -11.60042 -11.32565 -10.73978 -10.52161 -9.74188 -8.97735 -8.42133 -6.56733 0.35749 0.55972 1.36745 1.41232 1.49804 2.24652 2.72482 2.78329 2.92548 2.95283 3.59187 3.70118 3.94093 4.08079 4.14955 4.22036 4.27134 4.33320 4.44191 4.61045 4.66190 4.75204 4.81713 4.87026 4.91913 4.93890 5.01570 5.13356 5.20893 5.42756 5.51276 5.57861 5.60242 5.81366 5.96926 6.01228 6.48262 6.78073 7.15633 8.69929 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.006200 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.735324 B = 4515.200310 C = 5611.078506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.986 3.014 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.558 4.558 8 H 0.066 0.934 9 C 0.215 3.785 10 O -0.333 6.333 11 C 0.109 3.891 12 C -0.231 4.231 13 C -0.082 4.082 14 C -0.156 4.156 15 C -0.075 4.075 16 C -0.124 4.124 17 C -0.077 4.077 18 H 0.070 0.930 19 C -0.140 4.140 20 C 0.049 3.951 21 O -0.401 6.401 22 C 0.064 3.936 23 H 0.274 0.726 24 H -0.002 1.002 25 H -0.002 1.002 26 H 0.106 0.894 27 H 0.145 0.855 28 H 0.160 0.840 29 H 0.156 0.844 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 -15.313 1.503 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.084 0.916 9 C 0.142 3.858 10 O -0.247 6.247 11 C 0.063 3.937 12 C -0.250 4.250 13 C -0.100 4.100 14 C -0.174 4.174 15 C -0.092 4.092 16 C -0.125 4.125 17 C -0.096 4.096 18 H 0.088 0.912 19 C -0.178 4.178 20 C -0.027 4.027 21 O -0.320 6.320 22 C -0.012 4.012 23 H 0.083 0.917 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.124 0.876 27 H 0.163 0.837 28 H 0.177 0.823 29 H 0.173 0.827 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.511 -15.237 1.371 16.261 hybrid contribution -0.549 1.610 0.062 1.702 sum 4.961 -13.627 1.433 14.572 Atomic orbital electron populations 1.70049 1.07759 1.29115 1.49436 1.25950 0.95997 1.03333 0.93416 0.85193 0.78130 0.76398 0.79497 1.18945 1.19701 1.18848 1.21276 0.94306 0.90193 1.53737 0.91592 1.20110 0.88379 0.82740 0.94589 1.86016 1.38421 1.12777 1.87514 1.19528 0.92725 0.85584 0.95891 1.21449 0.94009 0.99678 1.09852 1.21239 1.01198 0.90893 0.96689 1.21354 0.92900 0.99634 1.03540 1.21094 0.95981 0.95053 0.97095 1.19089 0.93921 0.91362 1.08155 1.21418 0.91130 1.00689 0.96357 0.91151 1.23378 0.95693 1.01235 0.97472 1.23542 0.96337 1.02191 0.80585 1.88342 1.41909 1.75518 1.26278 1.23197 0.85803 0.96556 0.95638 0.91697 0.98441 0.98385 0.87579 0.83720 0.82270 0.82681 0.88507 0.89730 0.87065 0.92134 0.92252 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16 2 C 0.01 0.72 5.46 84.65 0.46 1.18 16 3 Si 0.99 43.70 29.54 68.60 2.03 45.72 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.56 -32.99 9.43 25.60 0.24 -32.75 16 8 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 9 C 0.22 12.17 4.49 71.24 0.32 12.49 16 10 O -0.33 -16.91 8.94 -92.44 -0.83 -17.73 16 11 C 0.11 4.59 6.66 22.51 0.15 4.74 16 12 C -0.23 -9.09 9.04 22.37 0.20 -8.88 16 13 C -0.08 -2.42 10.04 22.25 0.22 -2.19 16 14 C -0.16 -3.76 10.04 22.28 0.22 -3.54 16 15 C -0.07 -1.90 8.11 22.25 0.18 -1.72 16 16 C -0.12 -4.14 4.95 -19.77 -0.10 -4.24 16 17 C -0.08 -2.37 3.16 -10.28 -0.03 -2.41 16 18 H 0.07 2.62 7.11 -2.39 -0.02 2.61 16 19 C -0.14 -3.28 6.54 32.06 0.21 -3.07 16 20 C 0.05 1.06 7.78 72.65 0.57 1.63 16 21 O -0.40 -10.85 11.36 -148.98 -1.69 -12.54 16 22 C 0.06 1.79 7.31 72.45 0.53 2.32 16 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 24 H 0.00 -0.13 7.65 -2.39 -0.02 -0.15 16 25 H 0.00 -0.10 7.67 -2.39 -0.02 -0.11 16 26 H 0.11 4.64 6.30 -2.91 -0.02 4.62 16 27 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 28 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.16 2.93 7.30 -2.91 -0.02 2.90 16 30 H 0.10 1.91 6.83 -2.39 -0.02 1.89 16 31 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 2.10 7.03 -2.39 -0.02 2.09 16 Total: -1.00 -66.98 292.17 4.05 -62.93 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.08 Total: 12.59 kcal Atomic # 6 Polarization: -39.62 SS G_CDS: 3.18 Total: -36.45 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.28 Total: -54.53 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -2.52 Total: -30.27 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -66.98 4.05 -62.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260484669.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.350 kcal (2) G-P(sol) polarization free energy of solvation -66.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds