Wall clock time and date at job start Mon Mar 30 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00039 * 2 1 4 4 H 1.48500 * 109.47336 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.46973 * 29.99877 * 3 2 1 6 6 H 1.48500 * 109.47183 * 149.99735 * 3 2 1 7 7 C 1.37880 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99744 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00278 * 180.02562 * 7 2 1 10 10 O 1.42895 * 109.47241 * 180.02562 * 9 7 2 11 11 C 1.35903 * 117.00049 * 179.97438 * 10 9 7 12 12 C 1.38748 * 120.05538 * 359.73131 * 11 10 9 13 13 C 1.38123 * 119.94318 * 180.25154 * 12 11 10 14 14 C 1.38282 * 120.05864 * 0.04105 * 13 12 11 15 15 C 1.38248 * 120.11148 * 359.95155 * 14 13 12 16 16 C 1.50697 * 119.97634 * 180.02562 * 15 14 13 17 17 H 1.08992 * 110.80892 * 180.72753 * 16 15 14 18 18 C 1.54816 * 110.90383 * 57.09462 * 16 15 14 19 19 C 1.54096 * 104.18706 * 220.92329 * 18 16 15 20 20 O 1.43746 * 107.29371 * 357.97245 * 19 18 16 21 21 C 1.44416 * 107.00089 * 26.48695 * 20 19 18 22 22 C 1.38165 * 120.05352 * 0.02944 * 15 14 13 23 23 H 0.96996 * 120.00133 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47059 * 60.00193 * 9 7 2 25 25 H 1.08999 * 109.46888 * 300.00448 * 9 7 2 26 26 H 1.07998 * 120.02904 * 0.24228 * 12 11 10 27 27 H 1.08004 * 119.96722 * 179.97438 * 13 12 11 28 28 H 1.08000 * 119.94449 * 179.97438 * 14 13 12 29 29 H 1.08997 * 110.48817 * 339.60348 * 18 16 15 30 30 H 1.09000 * 110.48492 * 102.24841 * 18 16 15 31 31 H 1.08998 * 109.88323 * 117.39727 * 19 18 16 32 32 H 1.09002 * 109.87775 * 238.55059 * 19 18 16 33 33 H 1.09004 * 110.65466 * 201.47559 * 21 20 19 34 34 H 1.09001 * 110.59822 * 78.47110 * 21 20 19 35 35 H 1.08000 * 120.02914 * 180.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.3352 -2.7193 0.0009 12 6 6.1815 -1.6198 -0.0046 13 6 7.5505 -1.8035 -0.0099 14 6 8.0778 -3.0818 -0.0105 15 6 7.2368 -4.1790 -0.0048 16 6 7.8147 -5.5707 -0.0049 17 1 7.0223 -6.3191 -0.0130 18 6 8.7576 -5.7774 1.2055 19 6 9.9449 -6.5720 0.6280 20 8 9.6570 -6.8240 -0.7576 21 6 8.7761 -5.7703 -1.2042 22 6 5.8667 -4.0006 0.0009 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6801 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 5.7702 -0.6212 -0.0050 27 1 8.2096 -0.9479 -0.0147 28 1 9.1485 -3.2233 -0.0151 29 1 9.0947 -4.8168 1.5948 30 1 8.2572 -6.3517 1.9851 31 1 10.8603 -5.9870 0.7159 32 1 10.0535 -7.5163 1.1616 33 1 8.2240 -6.0808 -2.0913 34 1 9.3388 -4.8577 -1.4011 35 1 5.2100 -4.8581 0.0057 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260489157.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:51 Heat of formation + Delta-G solvation = -67.696971 kcal Electronic energy + Delta-G solvation = -17335.495298 eV Core-core repulsion = 14491.442544 eV Total energy + Delta-G solvation = -2844.052754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.19504 -39.05618 -36.90450 -33.21128 -32.83420 -30.61763 -29.91069 -28.25614 -28.05865 -23.72282 -22.72400 -22.29384 -21.80001 -19.87332 -17.71895 -16.94651 -16.52028 -15.81707 -15.61765 -15.47417 -14.94048 -14.85902 -14.27367 -13.99752 -13.53864 -13.03389 -12.84397 -12.65523 -12.25376 -12.12974 -11.66312 -11.56713 -11.39606 -11.12168 -11.02975 -10.84995 -10.59083 -10.24281 -10.00690 -9.89144 -9.38992 -8.79691 -8.59623 -7.71238 -6.27410 -4.29662 1.50871 1.75041 3.14228 3.20783 3.21851 3.71532 3.95753 4.07815 4.20954 4.48187 4.64326 4.80279 4.92994 5.02122 5.03075 5.07649 5.18663 5.33772 5.50948 5.52695 5.53529 5.62841 5.75038 5.77717 5.86977 5.97907 6.25860 6.29135 6.61810 6.64045 6.68066 6.73288 6.74939 7.07508 7.34745 7.95722 8.47591 8.82005 9.28345 10.84941 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.052447 B = 0.004230 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.747917 B = 6617.087072 C = 6925.159199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.086 0.914 9 C 0.168 3.832 10 O -0.303 6.303 11 C 0.153 3.847 12 C -0.217 4.217 13 C -0.077 4.077 14 C -0.173 4.173 15 C -0.042 4.042 16 C -0.079 4.079 17 H 0.094 0.906 18 C -0.149 4.149 19 C 0.047 3.953 20 O -0.381 6.381 21 C 0.055 3.945 22 C -0.159 4.159 23 H 0.270 0.730 24 H 0.019 0.981 25 H 0.014 0.986 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.232 -7.707 0.927 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.104 0.896 9 C 0.094 3.906 10 O -0.215 6.215 11 C 0.105 3.895 12 C -0.236 4.236 13 C -0.095 4.095 14 C -0.191 4.191 15 C -0.042 4.042 16 C -0.098 4.098 17 H 0.112 0.888 18 C -0.187 4.187 19 C -0.030 4.030 20 O -0.300 6.300 21 C -0.022 4.022 22 C -0.177 4.177 23 H 0.080 0.920 24 H 0.037 0.963 25 H 0.032 0.968 26 H 0.146 0.854 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.955 -7.891 0.806 20.547 hybrid contribution 0.259 1.477 0.184 1.511 sum 19.214 -6.414 0.990 20.280 Atomic orbital electron populations 1.69849 1.06034 1.27453 1.49119 1.24703 0.94839 0.98707 0.94237 0.86888 0.80410 0.83698 0.79063 1.19586 1.20379 1.18977 1.20775 0.87434 0.95807 1.52754 0.89554 1.21009 0.96569 0.77170 0.95814 1.86165 1.16234 1.33039 1.86018 1.19258 0.84533 0.93532 0.92188 1.21413 0.94206 0.98973 1.08977 1.20844 0.94351 0.96815 0.97457 1.20658 0.98913 0.92076 1.07496 1.19205 0.92429 0.93673 0.98904 1.21664 0.98198 0.94695 0.95207 0.88763 1.23074 0.95820 1.01580 0.98219 1.23173 0.97168 1.00043 0.82631 1.88866 1.67625 1.48539 1.24941 1.23708 0.90346 0.91092 0.97028 1.20284 0.94166 0.95302 1.07996 0.92004 0.96339 0.96789 0.85432 0.86284 0.86656 0.89994 0.90182 0.92443 0.89932 0.88616 0.91566 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 3 Si 0.87 20.53 27.47 -169.99 -4.67 15.86 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.53 -15.31 9.99 -34.44 -0.34 -15.65 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 C 0.17 4.14 3.56 36.01 0.13 4.27 16 10 O -0.30 -7.08 10.12 -19.43 -0.20 -7.28 16 11 C 0.15 2.96 6.69 -39.22 -0.26 2.69 16 12 C -0.22 -3.78 9.04 -39.44 -0.36 -4.14 16 13 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16 14 C -0.17 -2.22 8.14 -39.56 -0.32 -2.54 16 15 C -0.04 -0.56 4.96 -104.65 -0.52 -1.08 16 16 C -0.08 -0.86 3.34 -89.76 -0.30 -1.16 16 17 H 0.09 1.01 7.95 -51.93 -0.41 0.60 16 18 C -0.15 -1.38 6.49 -25.20 -0.16 -1.54 16 19 C 0.05 0.41 7.70 37.73 0.29 0.71 16 20 O -0.38 -4.37 11.52 -35.23 -0.41 -4.77 16 21 C 0.05 0.57 7.12 38.21 0.27 0.84 16 22 C -0.16 -2.59 9.63 -39.43 -0.38 -2.97 16 23 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 25 H 0.01 0.34 7.08 -51.93 -0.37 -0.03 16 26 H 0.13 2.27 6.30 -52.49 -0.33 1.93 16 27 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 28 H 0.12 1.20 7.27 -52.49 -0.38 0.82 16 29 H 0.08 0.75 7.01 -51.93 -0.36 0.38 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.66 6.88 -51.93 -0.36 0.30 16 35 H 0.13 1.96 7.98 -52.49 -0.42 1.55 16 LS Contribution 290.16 15.07 4.37 4.37 Total: -1.00 -30.63 290.16 -7.26 -37.89 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.69 Total: -0.34 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -2.45 Total: -19.91 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.77 Total: -25.82 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.60 Total: -12.05 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.63 -7.26 -37.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489157.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.802 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds