Wall clock time and date at job start Mon Mar 30 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00039 * 2 1 4 4 H 1.48500 * 109.47336 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.46973 * 29.99877 * 3 2 1 6 6 H 1.48500 * 109.47183 * 149.99735 * 3 2 1 7 7 C 1.37880 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99744 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00278 * 180.02562 * 7 2 1 10 10 O 1.42895 * 109.47241 * 180.02562 * 9 7 2 11 11 C 1.35903 * 117.00049 * 179.97438 * 10 9 7 12 12 C 1.38748 * 120.05538 * 359.73131 * 11 10 9 13 13 C 1.38123 * 119.94318 * 180.25154 * 12 11 10 14 14 C 1.38282 * 120.05864 * 0.04105 * 13 12 11 15 15 C 1.38248 * 120.11148 * 359.95155 * 14 13 12 16 16 C 1.50697 * 119.97634 * 180.02562 * 15 14 13 17 17 H 1.08992 * 110.80892 * 180.72753 * 16 15 14 18 18 C 1.54816 * 110.90383 * 57.09462 * 16 15 14 19 19 C 1.54096 * 104.18706 * 220.92329 * 18 16 15 20 20 O 1.43746 * 107.29371 * 357.97245 * 19 18 16 21 21 C 1.44416 * 107.00089 * 26.48695 * 20 19 18 22 22 C 1.38165 * 120.05352 * 0.02944 * 15 14 13 23 23 H 0.96996 * 120.00133 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47059 * 60.00193 * 9 7 2 25 25 H 1.08999 * 109.46888 * 300.00448 * 9 7 2 26 26 H 1.07998 * 120.02904 * 0.24228 * 12 11 10 27 27 H 1.08004 * 119.96722 * 179.97438 * 13 12 11 28 28 H 1.08000 * 119.94449 * 179.97438 * 14 13 12 29 29 H 1.08997 * 110.48817 * 339.60348 * 18 16 15 30 30 H 1.09000 * 110.48492 * 102.24841 * 18 16 15 31 31 H 1.08998 * 109.88323 * 117.39727 * 19 18 16 32 32 H 1.09002 * 109.87775 * 238.55059 * 19 18 16 33 33 H 1.09004 * 110.65466 * 201.47559 * 21 20 19 34 34 H 1.09001 * 110.59822 * 78.47110 * 21 20 19 35 35 H 1.08000 * 120.02914 * 180.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.3352 -2.7193 0.0009 12 6 6.1815 -1.6198 -0.0046 13 6 7.5505 -1.8035 -0.0099 14 6 8.0778 -3.0818 -0.0105 15 6 7.2368 -4.1790 -0.0048 16 6 7.8147 -5.5707 -0.0049 17 1 7.0223 -6.3191 -0.0130 18 6 8.7576 -5.7774 1.2055 19 6 9.9449 -6.5720 0.6280 20 8 9.6570 -6.8240 -0.7576 21 6 8.7761 -5.7703 -1.2042 22 6 5.8667 -4.0006 0.0009 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6801 0.8911 25 1 3.8752 -0.6804 -0.8888 26 1 5.7702 -0.6212 -0.0050 27 1 8.2096 -0.9479 -0.0147 28 1 9.1485 -3.2233 -0.0151 29 1 9.0947 -4.8168 1.5948 30 1 8.2572 -6.3517 1.9851 31 1 10.8603 -5.9870 0.7159 32 1 10.0535 -7.5163 1.1616 33 1 8.2240 -6.0808 -2.0913 34 1 9.3388 -4.8577 -1.4011 35 1 5.2100 -4.8581 0.0057 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260489157.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:51 Heat of formation + Delta-G solvation = -87.221579 kcal Electronic energy + Delta-G solvation = -17336.341949 eV Core-core repulsion = 14491.442544 eV Total energy + Delta-G solvation = -2844.899404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30163 -40.20977 -38.25939 -35.05120 -34.13611 -31.90430 -30.96982 -29.94474 -29.15939 -25.19363 -23.86685 -23.48395 -22.94110 -21.07252 -19.42559 -18.46413 -17.51736 -17.24857 -16.67184 -16.62600 -16.60356 -16.14196 -15.66941 -15.11714 -14.72190 -14.40457 -14.12086 -13.92457 -13.68589 -13.23853 -13.09951 -13.00540 -12.48780 -12.44343 -12.30817 -11.97114 -11.92101 -11.72619 -11.55684 -11.39609 -10.93431 -10.64216 -9.76278 -9.07931 -8.46364 -6.57776 0.32471 0.51597 1.29367 1.32532 1.42769 2.22230 2.51437 2.74183 2.85852 3.01823 3.66185 3.75674 3.93216 3.97761 4.14023 4.20587 4.25124 4.28462 4.34320 4.41830 4.59652 4.69560 4.74299 4.82995 4.89607 4.90808 5.04311 5.07852 5.16473 5.20602 5.43028 5.54010 5.60121 5.80614 5.91279 6.02739 6.46698 6.73987 7.06640 8.70307 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.052447 B = 0.004230 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.747917 B = 6617.087072 C = 6925.159199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.021 3.979 3 Si 0.952 3.048 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.243 1.243 7 C -0.558 4.558 8 H 0.034 0.966 9 C 0.184 3.816 10 O -0.337 6.337 11 C 0.109 3.891 12 C -0.231 4.231 13 C -0.071 4.071 14 C -0.156 4.156 15 C -0.031 4.031 16 C -0.081 4.081 17 H 0.090 0.910 18 C -0.145 4.145 19 C 0.044 3.956 20 O -0.400 6.400 21 C 0.056 3.944 22 C -0.171 4.171 23 H 0.277 0.723 24 H 0.026 0.974 25 H 0.025 0.975 26 H 0.121 0.879 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.143 -6.656 1.143 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.167 1.167 7 C -0.596 4.596 8 H 0.052 0.948 9 C 0.110 3.890 10 O -0.251 6.251 11 C 0.063 3.937 12 C -0.250 4.250 13 C -0.088 4.088 14 C -0.174 4.174 15 C -0.031 4.031 16 C -0.100 4.100 17 H 0.109 0.891 18 C -0.183 4.183 19 C -0.032 4.032 20 O -0.319 6.319 21 C -0.020 4.020 22 C -0.189 4.189 23 H 0.086 0.914 24 H 0.044 0.956 25 H 0.043 0.957 26 H 0.139 0.861 27 H 0.172 0.828 28 H 0.170 0.830 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 22.889 -6.871 1.026 23.920 hybrid contribution -0.890 0.963 0.122 1.317 sum 21.999 -5.907 1.147 22.807 Atomic orbital electron populations 1.70000 1.08231 1.29184 1.49861 1.25787 0.95830 1.03313 0.92939 0.85660 0.79594 0.77371 0.80138 1.18007 1.19333 1.16661 1.21032 0.90120 0.94402 1.53996 0.94773 1.20629 0.93624 0.78447 0.96332 1.86073 1.19308 1.31994 1.87695 1.19635 0.82969 0.95487 0.95626 1.21504 0.95654 0.97944 1.09895 1.21229 0.93151 0.98676 0.95775 1.21103 1.00621 0.91147 1.04549 1.19456 0.91105 0.95484 0.97085 1.21690 0.98605 0.92927 0.96748 0.89145 1.23075 0.95511 1.02180 0.97490 1.23334 0.97424 1.00985 0.81471 1.88856 1.67713 1.49025 1.26336 1.23727 0.90190 0.91433 0.96667 1.20454 0.95705 0.94222 1.08552 0.91383 0.95600 0.95725 0.86102 0.82816 0.82987 0.89309 0.89603 0.90868 0.88755 0.88552 0.90523 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.98 13.96 21.45 0.30 -57.68 16 2 C 0.02 1.21 5.47 84.66 0.46 1.67 16 3 Si 0.95 42.11 27.47 68.60 1.88 44.00 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 7 C -0.56 -33.93 9.99 25.60 0.26 -33.67 16 8 H 0.03 2.34 8.06 -2.91 -0.02 2.31 16 9 C 0.18 9.29 3.56 71.24 0.25 9.55 16 10 O -0.34 -16.57 10.12 -92.45 -0.94 -17.51 16 11 C 0.11 4.27 6.69 22.51 0.15 4.42 16 12 C -0.23 -7.77 9.04 22.36 0.20 -7.57 16 13 C -0.07 -1.74 10.04 22.25 0.22 -1.52 16 14 C -0.16 -3.38 8.14 22.28 0.18 -3.19 16 15 C -0.03 -0.76 4.96 -19.88 -0.10 -0.86 16 16 C -0.08 -1.57 3.34 -10.24 -0.03 -1.61 16 17 H 0.09 1.83 7.95 -2.39 -0.02 1.81 16 18 C -0.15 -2.20 6.49 31.59 0.20 -2.00 16 19 C 0.04 0.63 7.70 72.35 0.56 1.19 16 20 O -0.40 -8.06 11.52 -148.98 -1.72 -9.78 16 21 C 0.06 1.02 7.12 72.66 0.52 1.54 16 22 C -0.17 -5.59 9.63 22.37 0.22 -5.37 16 23 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 24 H 0.03 1.26 6.73 -2.39 -0.02 1.25 16 25 H 0.03 1.19 7.08 -2.39 -0.02 1.17 16 26 H 0.12 4.14 6.30 -2.91 -0.02 4.13 16 27 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 28 H 0.15 2.25 7.27 -2.91 -0.02 2.23 16 29 H 0.09 1.24 7.01 -2.39 -0.02 1.23 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.23 6.88 -2.39 -0.02 1.21 16 35 H 0.12 3.98 7.98 -2.91 -0.02 3.96 16 Total: -1.00 -70.20 290.16 3.64 -66.55 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.02 Total: 11.85 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 3.09 Total: -37.43 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.30 Total: -57.68 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -2.65 Total: -27.29 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.88 Total: 44.00 kcal Total: -70.20 3.64 -66.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489157.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.670 kcal (2) G-P(sol) polarization free energy of solvation -70.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds