Wall clock time and date at job start Mon Mar 30 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.35904 * 116.99628 * 179.97438 * 10 9 7 12 12 C 1.38758 * 120.05922 * 359.72826 * 11 10 9 13 13 C 1.38122 * 119.94483 * 179.73989 * 12 11 10 14 14 C 1.38286 * 120.05406 * 0.51239 * 13 12 11 15 15 C 1.38245 * 120.11304 * 359.76190 * 14 13 12 16 16 C 1.50704 * 119.97222 * 179.97438 * 15 14 13 17 17 H 1.08997 * 110.45155 * 177.41764 * 16 15 14 18 18 C 1.54506 * 110.51289 * 300.02791 * 16 15 14 19 19 C 1.54479 * 104.06277 * 118.64617 * 18 16 15 20 20 O 1.44422 * 104.80445 * 23.97456 * 19 18 16 21 21 C 1.44428 * 105.27702 * 319.48948 * 20 19 18 22 22 C 1.38173 * 120.05607 * 359.97438 * 15 14 13 23 23 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.08003 * 120.02200 * 359.97438 * 12 11 10 27 27 H 1.07999 * 119.96810 * 180.25032 * 13 12 11 28 28 H 1.08003 * 119.94351 * 179.74087 * 14 13 12 29 29 H 1.08999 * 110.50773 * 237.28744 * 18 16 15 30 30 H 1.09002 * 110.50981 * 359.97438 * 18 16 15 31 31 H 1.08994 * 110.37589 * 142.81175 * 19 18 16 32 32 H 1.09006 * 110.36700 * 265.14565 * 19 18 16 33 33 H 1.09004 * 110.37219 * 281.68256 * 21 20 19 34 34 H 1.09001 * 110.37487 * 159.34397 * 21 20 19 35 35 H 1.07997 * 120.02733 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 8 3.9877 -2.5415 -0.0001 11 6 5.3350 -2.7196 -0.0001 12 6 6.1814 -1.6201 -0.0058 13 6 7.5504 -1.8038 -0.0004 14 6 8.0776 -3.0823 -0.0001 15 6 7.2364 -4.1794 -0.0002 16 6 7.8144 -5.5712 -0.0004 17 1 7.0183 -6.3142 0.0455 18 6 8.6908 -5.7933 -1.2534 19 6 10.0969 -6.0804 -0.6819 20 8 9.8585 -6.5738 0.6543 21 6 8.7948 -5.7503 1.1799 22 6 5.8663 -4.0009 -0.0001 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6798 -0.8895 25 1 3.8745 -0.6810 0.8905 26 1 5.7700 -0.6215 -0.0105 27 1 8.2095 -0.9483 -0.0007 28 1 9.1483 -3.2238 -0.0001 29 1 8.3293 -6.6477 -1.8256 30 1 8.7056 -4.8965 -1.8729 31 1 10.6029 -6.8372 -1.2812 32 1 10.6872 -5.1646 -0.6485 33 1 9.1854 -4.7838 1.4988 34 1 8.3004 -6.2536 2.0108 35 1 5.2096 -4.8583 -0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260489162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:54 Heat of formation + Delta-G solvation = -67.417992 kcal Electronic energy + Delta-G solvation = -17377.880108 eV Core-core repulsion = 14533.839452 eV Total energy + Delta-G solvation = -2844.040656 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23466 -39.03802 -36.87372 -33.20103 -32.83579 -30.58055 -29.84947 -28.24754 -28.06991 -23.72109 -22.89296 -22.22523 -21.76552 -19.82615 -17.70654 -16.89143 -16.49104 -15.84069 -15.60259 -15.47854 -15.01214 -14.88519 -14.31708 -14.05812 -13.35178 -12.99922 -12.86171 -12.62372 -12.24836 -12.07890 -11.66694 -11.55524 -11.32442 -11.09196 -11.04208 -10.95432 -10.54492 -10.24667 -10.00728 -9.96669 -9.38993 -8.79724 -8.59724 -7.70988 -6.27472 -4.29677 1.51644 1.75335 3.14160 3.20837 3.21838 3.76660 3.96229 4.06774 4.20948 4.53847 4.64750 4.77218 4.94170 5.03065 5.03862 5.08485 5.20951 5.33882 5.49538 5.52694 5.54820 5.66484 5.74183 5.79834 5.85857 5.97355 6.25946 6.29222 6.57574 6.62756 6.68094 6.73556 6.75243 7.07951 7.34753 7.95779 8.47611 8.81951 9.28323 10.84891 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.052770 B = 0.004274 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.474274 B = 6549.316841 C = 6854.637352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.086 0.914 9 C 0.168 3.832 10 O -0.303 6.303 11 C 0.153 3.847 12 C -0.217 4.217 13 C -0.077 4.077 14 C -0.173 4.173 15 C -0.043 4.043 16 C -0.080 4.080 17 H 0.092 0.908 18 C -0.147 4.147 19 C 0.044 3.956 20 O -0.378 6.378 21 C 0.052 3.948 22 C -0.159 4.159 23 H 0.270 0.730 24 H 0.014 0.986 25 H 0.019 0.981 26 H 0.128 0.872 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.200 -7.584 -0.911 20.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.699 3.301 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.104 0.896 9 C 0.094 3.906 10 O -0.215 6.215 11 C 0.105 3.895 12 C -0.236 4.236 13 C -0.095 4.095 14 C -0.191 4.191 15 C -0.043 4.043 16 C -0.098 4.098 17 H 0.110 0.890 18 C -0.185 4.185 19 C -0.032 4.032 20 O -0.297 6.297 21 C -0.025 4.025 22 C -0.178 4.178 23 H 0.080 0.920 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.146 0.854 27 H 0.137 0.863 28 H 0.133 0.867 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.949 -7.767 -0.799 20.495 hybrid contribution 0.199 1.475 -0.158 1.497 sum 19.148 -6.292 -0.958 20.178 Atomic orbital electron populations 1.69851 1.06037 1.27448 1.49116 1.24702 0.94840 0.98708 0.94237 0.86887 0.80420 0.83696 0.79054 1.19598 1.20374 1.18970 1.20776 0.87435 0.95805 1.52756 0.89554 1.21010 0.96567 0.77170 0.95809 1.86167 1.16241 1.33032 1.86023 1.19262 0.84526 0.93538 0.92185 1.21412 0.94201 0.98966 1.09019 1.20845 0.94349 0.96815 0.97464 1.20655 0.98896 0.92071 1.07519 1.19301 0.92431 0.93825 0.98783 1.21491 0.98505 0.94581 0.95260 0.88955 1.23054 0.94725 1.03084 0.97649 1.23438 0.96558 0.99375 0.83867 1.89112 1.55137 1.56764 1.28661 1.23600 0.87060 0.95681 0.96164 1.20288 0.94170 0.95289 1.08053 0.92006 0.96803 0.96336 0.85443 0.86300 0.86731 0.90391 0.89851 0.89183 0.92301 0.91519 0.88803 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 7 C -0.53 -15.31 9.99 -34.44 -0.34 -15.66 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 C 0.17 4.15 3.56 36.01 0.13 4.27 16 10 O -0.30 -7.09 10.12 -19.44 -0.20 -7.28 16 11 C 0.15 2.96 6.69 -39.22 -0.26 2.70 16 12 C -0.22 -3.79 9.04 -39.43 -0.36 -4.15 16 13 C -0.08 -1.09 10.04 -39.61 -0.40 -1.48 16 14 C -0.17 -2.23 8.19 -39.56 -0.32 -2.55 16 15 C -0.04 -0.58 4.77 -104.64 -0.50 -1.08 16 16 C -0.08 -0.87 3.34 -90.20 -0.30 -1.17 16 17 H 0.09 0.98 7.94 -51.93 -0.41 0.56 16 18 C -0.15 -1.38 6.53 -25.16 -0.16 -1.54 16 19 C 0.04 0.39 7.63 37.93 0.29 0.68 16 20 O -0.38 -4.31 11.65 -35.23 -0.41 -4.72 16 21 C 0.05 0.54 7.07 37.94 0.27 0.81 16 22 C -0.16 -2.60 9.62 -39.43 -0.38 -2.98 16 23 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.01 0.34 7.07 -51.93 -0.37 -0.03 16 25 H 0.02 0.45 6.74 -51.93 -0.35 0.10 16 26 H 0.13 2.27 6.30 -52.48 -0.33 1.94 16 27 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.11 1.21 7.59 -52.48 -0.40 0.81 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.79 7.40 -51.93 -0.38 0.41 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.69 6.74 -51.93 -0.35 0.34 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.13 1.96 7.97 -52.49 -0.42 1.54 16 LS Contribution 290.63 15.07 4.38 4.38 Total: -1.00 -30.65 290.63 -7.28 -37.93 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.71 Total: -0.33 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -2.44 Total: -20.02 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.77 Total: -25.82 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.61 Total: -12.01 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.65 -7.28 -37.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.490 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds