Wall clock time and date at job start Mon Mar 30 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.35904 * 116.99628 * 179.97438 * 10 9 7 12 12 C 1.38758 * 120.05922 * 359.72826 * 11 10 9 13 13 C 1.38122 * 119.94483 * 179.73989 * 12 11 10 14 14 C 1.38286 * 120.05406 * 0.51239 * 13 12 11 15 15 C 1.38245 * 120.11304 * 359.76190 * 14 13 12 16 16 C 1.50704 * 119.97222 * 179.97438 * 15 14 13 17 17 H 1.08997 * 110.45155 * 177.41764 * 16 15 14 18 18 C 1.54506 * 110.51289 * 300.02791 * 16 15 14 19 19 C 1.54479 * 104.06277 * 118.64617 * 18 16 15 20 20 O 1.44422 * 104.80445 * 23.97456 * 19 18 16 21 21 C 1.44428 * 105.27702 * 319.48948 * 20 19 18 22 22 C 1.38173 * 120.05607 * 359.97438 * 15 14 13 23 23 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 1.08003 * 120.02200 * 359.97438 * 12 11 10 27 27 H 1.07999 * 119.96810 * 180.25032 * 13 12 11 28 28 H 1.08003 * 119.94351 * 179.74087 * 14 13 12 29 29 H 1.08999 * 110.50773 * 237.28744 * 18 16 15 30 30 H 1.09002 * 110.50981 * 359.97438 * 18 16 15 31 31 H 1.08994 * 110.37589 * 142.81175 * 19 18 16 32 32 H 1.09006 * 110.36700 * 265.14565 * 19 18 16 33 33 H 1.09004 * 110.37219 * 281.68256 * 21 20 19 34 34 H 1.09001 * 110.37487 * 159.34397 * 21 20 19 35 35 H 1.07997 * 120.02733 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 8 3.9877 -2.5415 -0.0001 11 6 5.3350 -2.7196 -0.0001 12 6 6.1814 -1.6201 -0.0058 13 6 7.5504 -1.8038 -0.0004 14 6 8.0776 -3.0823 -0.0001 15 6 7.2364 -4.1794 -0.0002 16 6 7.8144 -5.5712 -0.0004 17 1 7.0183 -6.3142 0.0455 18 6 8.6908 -5.7933 -1.2534 19 6 10.0969 -6.0804 -0.6819 20 8 9.8585 -6.5738 0.6543 21 6 8.7948 -5.7503 1.1799 22 6 5.8663 -4.0009 -0.0001 23 1 -0.4850 0.8401 -0.0004 24 1 3.8751 -0.6798 -0.8895 25 1 3.8745 -0.6810 0.8905 26 1 5.7700 -0.6215 -0.0105 27 1 8.2095 -0.9483 -0.0007 28 1 9.1483 -3.2238 -0.0001 29 1 8.3293 -6.6477 -1.8256 30 1 8.7056 -4.8965 -1.8729 31 1 10.6029 -6.8372 -1.2812 32 1 10.6872 -5.1646 -0.6485 33 1 9.1854 -4.7838 1.4988 34 1 8.3004 -6.2536 2.0108 35 1 5.2096 -4.8583 -0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260489162.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:53 Heat of formation + Delta-G solvation = -86.945432 kcal Electronic energy + Delta-G solvation = -17378.726881 eV Core-core repulsion = 14533.839452 eV Total energy + Delta-G solvation = -2844.887430 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33327 -40.21144 -38.22485 -35.05050 -34.12888 -31.88970 -30.90315 -29.93065 -29.17151 -25.17719 -23.99221 -23.44331 -22.96285 -21.01521 -19.41851 -18.44720 -17.44889 -17.24644 -16.65581 -16.62929 -16.58622 -16.18934 -15.77767 -15.19198 -14.73702 -14.36557 -13.97560 -13.90156 -13.70635 -13.20309 -13.04142 -13.01168 -12.51645 -12.41029 -12.25878 -12.00626 -11.90420 -11.72056 -11.59724 -11.37837 -10.93521 -10.72902 -9.77002 -9.08104 -8.46461 -6.57823 0.32799 0.51357 1.29276 1.32408 1.42705 2.22160 2.51644 2.75271 2.85872 3.05359 3.70516 3.74670 3.92440 3.95924 4.14607 4.20492 4.25961 4.28684 4.37455 4.42496 4.59156 4.70052 4.74169 4.83148 4.89333 4.93589 5.02831 5.09692 5.13243 5.20530 5.42634 5.53733 5.59888 5.79207 5.86464 6.02697 6.46623 6.73835 7.06576 8.70217 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.052770 B = 0.004274 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.474274 B = 6549.316841 C = 6854.637352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.021 3.979 3 Si 0.952 3.048 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.244 1.244 7 C -0.558 4.558 8 H 0.034 0.966 9 C 0.184 3.816 10 O -0.337 6.337 11 C 0.109 3.891 12 C -0.231 4.231 13 C -0.071 4.071 14 C -0.157 4.157 15 C -0.032 4.032 16 C -0.081 4.081 17 H 0.091 0.909 18 C -0.144 4.144 19 C 0.042 3.958 20 O -0.396 6.396 21 C 0.053 3.947 22 C -0.171 4.171 23 H 0.277 0.723 24 H 0.025 0.975 25 H 0.026 0.974 26 H 0.121 0.879 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.048 -6.575 -1.125 23.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.167 1.167 7 C -0.595 4.595 8 H 0.052 0.948 9 C 0.110 3.890 10 O -0.251 6.251 11 C 0.063 3.937 12 C -0.250 4.250 13 C -0.088 4.088 14 C -0.175 4.175 15 C -0.033 4.033 16 C -0.100 4.100 17 H 0.109 0.891 18 C -0.182 4.182 19 C -0.034 4.034 20 O -0.315 6.315 21 C -0.023 4.023 22 C -0.189 4.189 23 H 0.086 0.914 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.139 0.861 27 H 0.171 0.829 28 H 0.168 0.832 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.124 0.876 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 22.820 -6.789 -1.016 23.830 hybrid contribution -0.931 0.979 -0.102 1.355 sum 21.889 -5.810 -1.119 22.675 Atomic orbital electron populations 1.70002 1.08227 1.29176 1.49856 1.25783 0.95829 1.03302 0.92939 0.85661 0.79590 0.77385 0.80140 1.17990 1.19336 1.16688 1.21033 0.90112 0.94406 1.53999 0.94760 1.20631 0.93631 0.78447 0.96325 1.86076 1.19299 1.31986 1.87691 1.19640 0.82966 0.95492 0.95598 1.21502 0.95628 0.97952 1.09940 1.21224 0.93167 0.98650 0.95803 1.21085 1.00537 0.91190 1.04641 1.19561 0.91114 0.95644 0.96937 1.21533 0.98910 0.92838 0.96723 0.89107 1.23053 0.94758 1.03541 0.96828 1.23616 0.96302 1.00601 0.82892 1.89107 1.55186 1.57298 1.29897 1.23606 0.86811 0.96024 0.95907 1.20461 0.95690 0.94223 1.08572 0.91384 0.95719 0.95626 0.86108 0.82864 0.83219 0.89715 0.89625 0.87598 0.90900 0.90908 0.88453 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.96 13.96 21.45 0.30 -57.66 16 2 C 0.02 1.22 5.47 84.66 0.46 1.68 16 3 Si 0.95 42.13 27.47 68.60 1.88 44.01 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 7 C -0.56 -33.92 9.99 25.60 0.26 -33.66 16 8 H 0.03 2.34 8.06 -2.91 -0.02 2.32 16 9 C 0.18 9.30 3.56 71.24 0.25 9.55 16 10 O -0.34 -16.56 10.12 -92.47 -0.94 -17.50 16 11 C 0.11 4.28 6.69 22.51 0.15 4.43 16 12 C -0.23 -7.80 9.04 22.37 0.20 -7.60 16 13 C -0.07 -1.76 10.04 22.25 0.22 -1.53 16 14 C -0.16 -3.42 8.19 22.28 0.18 -3.24 16 15 C -0.03 -0.80 4.77 -19.88 -0.09 -0.89 16 16 C -0.08 -1.58 3.34 -10.52 -0.04 -1.62 16 17 H 0.09 1.80 7.94 -2.39 -0.02 1.78 16 18 C -0.14 -2.25 6.53 31.61 0.21 -2.04 16 19 C 0.04 0.59 7.63 72.48 0.55 1.15 16 20 O -0.40 -7.85 11.65 -148.98 -1.74 -9.59 16 21 C 0.05 0.97 7.07 72.49 0.51 1.48 16 22 C -0.17 -5.59 9.62 22.37 0.22 -5.37 16 23 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 24 H 0.03 1.19 7.07 -2.39 -0.02 1.17 16 25 H 0.03 1.25 6.74 -2.39 -0.02 1.24 16 26 H 0.12 4.15 6.30 -2.91 -0.02 4.13 16 27 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.15 2.30 7.59 -2.91 -0.02 2.28 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.31 7.40 -2.39 -0.02 1.30 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.07 1.23 6.74 -2.38 -0.02 1.21 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.12 3.98 7.97 -2.91 -0.02 3.96 16 Total: -1.00 -70.08 290.63 3.62 -66.46 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.02 Total: 11.95 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 3.09 Total: -37.68 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.30 Total: -57.66 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -2.67 Total: -27.09 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.01 kcal Total: -70.08 3.62 -66.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489162.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.485 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds