Wall clock time and date at job start Mon Mar 30 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35971 * 117.00143 * 2 1 4 4 C 1.38261 * 120.07586 * 359.97438 * 3 2 1 5 5 C 1.38694 * 120.51054 * 180.27803 * 4 3 2 6 6 C 1.37678 * 120.38876 * 359.48793 * 5 4 3 7 7 C 1.39608 * 119.79490 * 0.50747 * 6 5 4 8 8 C 1.47098 * 133.61018 * 179.74884 * 7 6 5 9 9 N 1.38780 * 126.37835 * 359.97438 * 8 7 6 10 10 C 1.46505 * 119.99765 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46523 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00605 * 0.02562 * 11 10 9 13 13 C 1.37886 * 119.99598 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99781 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47272 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47070 * 119.99930 * 15 13 11 18 18 H 1.48499 * 109.47063 * 240.00328 * 15 13 11 19 19 N 1.30422 * 107.24242 * 180.02562 * 8 7 6 20 20 O 1.41335 * 109.60749 * 359.97438 * 19 8 7 21 21 C 1.34969 * 109.46082 * 0.02562 * 20 19 8 22 22 H 1.08999 * 109.47064 * 59.99888 * 1 2 3 23 23 H 1.09000 * 109.46911 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47284 * 300.00174 * 1 2 3 25 25 H 1.08002 * 119.74022 * 359.97438 * 4 3 2 26 26 H 1.08006 * 119.80736 * 179.72028 * 5 4 3 27 27 H 1.08006 * 120.10193 * 180.25850 * 6 5 4 28 28 H 0.97000 * 120.00076 * 359.97438 * 9 8 7 29 29 H 1.08995 * 109.47312 * 300.00231 * 10 9 8 30 30 H 1.09002 * 109.46756 * 60.00803 * 10 9 8 31 31 H 0.96992 * 119.99387 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2948 2.3721 -0.0005 5 6 1.9151 3.6126 -0.0063 6 6 3.2888 3.7044 -0.0010 7 6 4.0618 2.5418 -0.0005 8 6 5.5105 2.2866 -0.0003 9 7 6.5150 3.2442 -0.0011 10 6 7.9206 2.8312 -0.0002 11 6 8.8029 4.0529 -0.0020 12 1 8.3610 5.0383 -0.0032 13 6 10.1746 3.9126 -0.0020 14 7 10.7129 2.7126 -0.0010 15 14 11.2684 5.4268 -0.0036 16 1 10.4233 6.6479 -0.0039 17 1 12.1259 5.4193 1.2088 18 1 12.1255 5.4171 -1.2162 19 7 5.6751 0.9928 -0.0002 20 8 4.4142 0.3543 0.0001 21 6 3.4381 1.2864 -0.0002 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2165 2.3121 -0.0014 26 1 1.3170 4.5119 -0.0113 27 1 3.7670 4.6728 -0.0014 28 1 6.2864 4.1869 -0.0023 29 1 8.1241 2.2369 0.8905 30 1 8.1246 2.2349 -0.8895 31 1 11.6778 2.6139 -0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260496776.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:49 Heat of formation + Delta-G solvation = 27.932097 kcal Electronic energy + Delta-G solvation = -17034.287527 eV Core-core repulsion = 14090.841217 eV Total energy + Delta-G solvation = -2943.446309 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.30771 -39.25334 -36.65004 -35.86601 -32.99040 -31.11912 -30.10089 -29.59649 -27.37103 -26.96237 -23.25469 -22.64993 -22.07666 -20.34706 -18.39592 -17.40613 -16.68067 -16.35996 -16.12043 -15.43234 -15.11338 -14.83347 -14.73452 -14.36072 -13.53631 -13.05397 -13.03287 -12.65200 -12.26080 -12.13412 -11.64130 -11.40936 -11.40232 -11.07119 -10.96901 -10.61654 -10.59566 -10.23737 -9.46494 -8.83562 -8.69932 -8.15457 -7.31971 -6.23085 -4.30582 0.87254 1.36972 2.81990 2.98323 3.10515 3.20878 3.28185 3.31139 3.68760 3.83200 4.30141 4.53055 4.68307 4.91065 4.96370 5.06479 5.10150 5.13619 5.25758 5.28858 5.43069 5.80533 6.03734 6.19231 6.32090 6.53412 7.06641 7.15375 7.38274 7.49755 7.62948 7.86580 8.14499 8.47460 8.80078 9.35511 10.87156 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.051643 B = 0.004417 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.053180 B = 6337.025275 C = 6858.631413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.112 3.888 4 C -0.162 4.162 5 C -0.125 4.125 6 C -0.073 4.073 7 C -0.164 4.164 8 C 0.372 3.628 9 N -0.673 5.673 10 C 0.253 3.747 11 C -0.545 4.545 12 H 0.066 0.934 13 C 0.065 3.935 14 N -0.884 5.884 15 Si 0.906 3.094 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.281 1.281 19 N -0.356 5.356 20 O -0.098 6.098 21 C 0.078 3.922 22 H 0.055 0.945 23 H 0.100 0.900 24 H 0.055 0.945 25 H 0.138 0.862 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.406 0.594 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.148 1.606 -0.006 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.065 3.935 4 C -0.181 4.181 5 C -0.143 4.143 6 C -0.093 4.093 7 C -0.169 4.169 8 C 0.099 3.901 9 N -0.312 5.312 10 C 0.133 3.867 11 C -0.583 4.583 12 H 0.084 0.916 13 C -0.139 4.139 14 N -0.521 5.521 15 Si 0.733 3.267 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 N -0.128 5.128 20 O -0.100 6.100 21 C 0.022 3.978 22 H 0.073 0.927 23 H 0.118 0.882 24 H 0.074 0.926 25 H 0.156 0.844 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.242 0.758 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.959 0.138 -0.006 18.960 hybrid contribution -0.117 1.846 0.000 1.850 sum -19.076 1.984 -0.006 19.179 Atomic orbital electron populations 1.23062 0.78433 1.04039 1.01199 1.86175 1.21173 1.25946 1.89174 1.17671 0.87128 0.85526 1.03151 1.21037 0.99824 0.91270 1.06016 1.20656 0.93817 0.97018 1.02809 1.20583 0.93224 0.96870 0.98602 1.20373 0.91014 0.94079 1.11456 1.21329 0.86933 0.90502 0.91305 1.44759 1.04925 1.05077 1.76465 1.19308 0.72849 0.96657 0.97857 1.21174 0.91218 0.92261 1.53641 0.91632 1.24944 0.97899 0.96548 0.94531 1.69980 1.11870 1.21652 1.48564 0.86316 0.80294 0.82232 0.77815 1.19586 1.20725 1.20720 1.80525 0.91984 1.04244 1.36057 1.89227 1.10879 1.27763 1.82162 1.19238 0.89218 0.89582 0.99748 0.92653 0.88173 0.92645 0.84391 0.84906 0.84964 0.75765 0.95321 0.95320 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.27 10.50 -19.65 -0.21 -4.48 16 3 C 0.11 1.64 6.70 -39.15 -0.26 1.38 16 4 C -0.16 -1.81 9.03 -39.40 -0.36 -2.16 16 5 C -0.12 -1.36 10.02 -39.62 -0.40 -1.75 16 6 C -0.07 -0.97 10.09 -39.27 -0.40 -1.37 16 7 C -0.16 -2.88 6.35 -105.06 -0.67 -3.54 16 8 C 0.37 7.79 8.15 -153.63 -1.25 6.54 16 9 N -0.67 -14.29 5.71 -59.73 -0.34 -14.63 16 10 C 0.25 6.57 5.78 -5.19 -0.03 6.54 16 11 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 16 12 H 0.07 1.63 7.60 -52.49 -0.40 1.24 16 13 C 0.06 1.77 5.46 -17.81 -0.10 1.67 16 14 N -0.88 -25.66 13.29 55.43 0.74 -24.92 16 15 Si 0.91 20.59 29.54 -169.99 -5.02 15.57 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 N -0.36 -8.30 12.49 32.52 0.41 -7.89 16 20 O -0.10 -2.12 12.06 7.27 0.09 -2.03 16 21 C 0.08 1.42 7.41 -38.43 -0.28 1.13 16 22 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 23 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 25 H 0.14 1.05 6.26 -52.49 -0.33 0.72 16 26 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 27 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.41 7.42 8.45 -40.82 -0.34 7.08 16 29 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 279.46 15.07 4.21 4.21 Total: -1.00 -32.07 279.46 -6.31 -38.38 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -3.12 Total: 0.97 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -3.07 Total: -5.18 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.80 Total: -47.44 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.12 Total: -6.51 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.07 -6.31 -38.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260496776.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.313 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds