Wall clock time and date at job start Mon Mar 30 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35971 * 117.00143 * 2 1 4 4 C 1.38261 * 120.07586 * 359.97438 * 3 2 1 5 5 C 1.38694 * 120.51054 * 180.27803 * 4 3 2 6 6 C 1.37678 * 120.38876 * 359.48793 * 5 4 3 7 7 C 1.39608 * 119.79490 * 0.50747 * 6 5 4 8 8 C 1.47098 * 133.61018 * 179.74884 * 7 6 5 9 9 N 1.38780 * 126.37835 * 359.97438 * 8 7 6 10 10 C 1.46505 * 119.99765 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46523 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00605 * 0.02562 * 11 10 9 13 13 C 1.37886 * 119.99598 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99781 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47272 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47070 * 119.99930 * 15 13 11 18 18 H 1.48499 * 109.47063 * 240.00328 * 15 13 11 19 19 N 1.30422 * 107.24242 * 180.02562 * 8 7 6 20 20 O 1.41335 * 109.60749 * 359.97438 * 19 8 7 21 21 C 1.34969 * 109.46082 * 0.02562 * 20 19 8 22 22 H 1.08999 * 109.47064 * 59.99888 * 1 2 3 23 23 H 1.09000 * 109.46911 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47284 * 300.00174 * 1 2 3 25 25 H 1.08002 * 119.74022 * 359.97438 * 4 3 2 26 26 H 1.08006 * 119.80736 * 179.72028 * 5 4 3 27 27 H 1.08006 * 120.10193 * 180.25850 * 6 5 4 28 28 H 0.97000 * 120.00076 * 359.97438 * 9 8 7 29 29 H 1.08995 * 109.47312 * 300.00231 * 10 9 8 30 30 H 1.09002 * 109.46756 * 60.00803 * 10 9 8 31 31 H 0.96992 * 119.99387 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2948 2.3721 -0.0005 5 6 1.9151 3.6126 -0.0063 6 6 3.2888 3.7044 -0.0010 7 6 4.0618 2.5418 -0.0005 8 6 5.5105 2.2866 -0.0003 9 7 6.5150 3.2442 -0.0011 10 6 7.9206 2.8312 -0.0002 11 6 8.8029 4.0529 -0.0020 12 1 8.3610 5.0383 -0.0032 13 6 10.1746 3.9126 -0.0020 14 7 10.7129 2.7126 -0.0010 15 14 11.2684 5.4268 -0.0036 16 1 10.4233 6.6479 -0.0039 17 1 12.1259 5.4193 1.2088 18 1 12.1255 5.4171 -1.2162 19 7 5.6751 0.9928 -0.0002 20 8 4.4142 0.3543 0.0001 21 6 3.4381 1.2864 -0.0002 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2165 2.3121 -0.0014 26 1 1.3170 4.5119 -0.0113 27 1 3.7670 4.6728 -0.0014 28 1 6.2864 4.1869 -0.0023 29 1 8.1241 2.2369 0.8905 30 1 8.1246 2.2349 -0.8895 31 1 11.6778 2.6139 -0.0014 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260496776.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:49 Heat of formation + Delta-G solvation = 5.390364 kcal Electronic energy + Delta-G solvation = -17035.265010 eV Core-core repulsion = 14090.841217 eV Total energy + Delta-G solvation = -2944.423792 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.63810 -40.31734 -37.77268 -37.57583 -34.96367 -32.77987 -31.24666 -30.74748 -28.96576 -28.11252 -25.07280 -23.79954 -23.42635 -21.90085 -19.69908 -18.71634 -18.46150 -17.44522 -17.28586 -17.00818 -16.39485 -16.28545 -16.09415 -15.41056 -15.21396 -14.96502 -14.27980 -14.08847 -13.50416 -13.23756 -12.99595 -12.90385 -12.59449 -12.58729 -12.28968 -12.21958 -12.02100 -11.91846 -11.48545 -10.77044 -9.98779 -9.57060 -8.81427 -8.31931 -6.48755 -0.29577 0.28651 1.33528 1.42919 1.44682 1.56083 1.60231 2.04636 2.34951 2.51821 2.58465 3.03675 3.25023 3.82229 3.86107 4.02592 4.11708 4.30757 4.43209 4.46141 4.60001 4.78133 4.97715 5.04757 5.16231 5.16297 5.31640 5.47697 5.59589 5.75932 5.90685 6.25931 6.45604 6.59384 6.98250 7.24633 8.80580 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.051643 B = 0.004417 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.053180 B = 6337.025275 C = 6858.631413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.342 6.342 3 C 0.103 3.897 4 C -0.139 4.139 5 C -0.100 4.100 6 C -0.078 4.078 7 C -0.177 4.177 8 C 0.364 3.636 9 N -0.668 5.668 10 C 0.274 3.726 11 C -0.556 4.556 12 H 0.086 0.914 13 C 0.005 3.995 14 N -0.930 5.930 15 Si 0.987 3.013 16 H -0.252 1.252 17 H -0.279 1.279 18 H -0.279 1.279 19 N -0.411 5.411 20 O -0.123 6.123 21 C 0.031 3.969 22 H 0.076 0.924 23 H 0.115 0.885 24 H 0.076 0.924 25 H 0.185 0.815 26 H 0.185 0.815 27 H 0.158 0.842 28 H 0.422 0.578 29 H -0.009 1.009 30 H -0.009 1.009 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.333 4.870 -0.012 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.257 6.257 3 C 0.056 3.944 4 C -0.159 4.159 5 C -0.117 4.117 6 C -0.098 4.098 7 C -0.182 4.182 8 C 0.093 3.907 9 N -0.309 5.309 10 C 0.152 3.848 11 C -0.594 4.594 12 H 0.104 0.896 13 C -0.195 4.195 14 N -0.568 5.568 15 Si 0.810 3.190 16 H -0.175 1.175 17 H -0.205 1.205 18 H -0.204 1.204 19 N -0.182 5.182 20 O -0.128 6.128 21 C -0.023 4.023 22 H 0.094 0.906 23 H 0.133 0.867 24 H 0.094 0.906 25 H 0.202 0.798 26 H 0.202 0.798 27 H 0.175 0.825 28 H 0.261 0.739 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.208 3.418 -0.012 22.470 hybrid contribution 0.579 0.771 0.001 0.964 sum -21.629 4.188 -0.010 22.031 Atomic orbital electron populations 1.23470 0.75357 1.05899 1.03101 1.86145 1.24381 1.26004 1.89151 1.17973 0.85933 0.87267 1.03204 1.21652 1.01854 0.89877 1.02502 1.21298 0.92864 0.98740 0.98846 1.21020 0.94362 0.96282 0.98108 1.20360 0.88794 0.95654 1.13370 1.21591 0.88793 0.89968 0.90367 1.44285 1.03324 1.05903 1.77428 1.18727 0.75708 0.96056 0.94358 1.21571 0.91666 0.92936 1.53200 0.89565 1.26061 0.99680 0.99992 0.93722 1.70142 1.12403 1.24524 1.49733 0.85071 0.77949 0.78275 0.77680 1.17514 1.20452 1.20442 1.80358 0.94449 1.06093 1.37276 1.89108 1.11083 1.28778 1.83809 1.19882 0.90465 0.89221 1.02715 0.90588 0.86713 0.90583 0.79758 0.79816 0.82458 0.73917 0.99111 0.99117 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -9.01 10.50 -93.23 -0.98 -9.99 16 3 C 0.10 2.87 6.70 22.55 0.15 3.02 16 4 C -0.14 -2.44 9.03 22.38 0.20 -2.24 16 5 C -0.10 -1.61 10.02 22.25 0.22 -1.39 16 6 C -0.08 -1.84 10.09 22.47 0.23 -1.61 16 7 C -0.18 -6.23 6.35 -20.15 -0.13 -6.36 16 8 C 0.36 16.16 8.15 135.83 1.11 17.27 16 9 N -0.67 -29.60 5.71 -342.88 -1.96 -31.55 16 10 C 0.27 15.10 5.78 85.63 0.49 15.59 16 11 C -0.56 -30.16 9.28 25.60 0.24 -29.93 16 12 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 13 C 0.01 0.29 5.46 84.66 0.46 0.76 16 14 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 15 Si 0.99 42.14 29.54 68.60 2.03 44.17 16 16 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 17 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 19 N -0.41 -20.82 12.49 -51.04 -0.64 -21.46 16 20 O -0.12 -5.75 12.06 28.39 0.34 -5.40 16 21 C 0.03 1.15 7.41 23.02 0.17 1.32 16 22 H 0.08 0.64 7.66 -2.39 -0.02 0.62 16 23 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.08 0.64 7.66 -2.39 -0.02 0.62 16 25 H 0.19 1.51 6.26 -2.91 -0.02 1.49 16 26 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 27 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 28 H 0.42 15.47 8.45 -92.71 -0.78 14.69 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -77.20 279.46 3.72 -73.48 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.39 Total: 8.75 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 4.26 Total: -2.26 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -2.31 Total: -108.75 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.64 Total: -15.39 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -77.20 3.72 -73.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260496776.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.872 kcal (2) G-P(sol) polarization free energy of solvation -77.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds