Wall clock time and date at job start Mon Mar 30 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86799 * 120.00276 * 2 1 4 4 H 1.48503 * 109.46815 * 270.00205 * 3 2 1 5 5 H 1.48504 * 109.47212 * 29.99595 * 3 2 1 6 6 H 1.48492 * 109.47289 * 149.99934 * 3 2 1 7 7 C 1.38655 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00545 * 0.02562 * 7 2 1 9 9 O 1.34834 * 119.99684 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00114 * 185.07486 * 9 7 2 11 11 C 1.38902 * 120.06478 * 354.41164 * 10 9 7 12 12 C 1.38076 * 119.93006 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06753 * 359.97438 * 12 11 10 14 14 C 1.38286 * 120.13970 * 0.02562 * 13 12 11 15 15 C 1.38118 * 120.06715 * 359.95982 * 14 13 12 16 16 C 1.50699 * 120.03410 * 179.97438 * 15 14 13 17 17 C 1.53180 * 109.54012 * 59.56138 * 16 15 14 18 18 C 1.53096 * 109.16124 * 183.15621 * 17 16 15 19 19 O 1.42896 * 109.41934 * 57.60223 * 18 17 16 20 20 C 1.42905 * 114.09652 * 298.84544 * 19 18 17 21 21 C 1.53090 * 109.41665 * 61.15635 * 20 19 18 22 22 H 0.97008 * 120.00232 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.03985 * 0.24964 * 11 10 9 24 24 H 1.08002 * 119.96915 * 179.97438 * 12 11 10 25 25 H 1.07999 * 119.93464 * 180.02562 * 13 12 11 26 26 H 1.08004 * 119.96441 * 179.97438 * 14 13 12 27 27 H 1.09005 * 109.54104 * 179.81754 * 16 15 14 28 28 H 1.09009 * 109.51858 * 303.04925 * 17 16 15 29 29 H 1.08995 * 109.52716 * 63.24159 * 17 16 15 30 30 H 1.09003 * 109.47302 * 297.61496 * 18 17 16 31 31 H 1.09003 * 109.47803 * 177.58983 * 18 17 16 32 32 H 1.09000 * 109.48242 * 301.17268 * 20 19 18 33 33 H 1.08997 * 109.47959 * 181.14572 * 20 19 18 34 34 H 1.08999 * 109.52177 * 182.48366 * 21 20 19 35 35 H 1.09005 * 109.51986 * 62.30157 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0087 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9733 -2.4057 -0.1064 11 6 3.2232 -3.5747 -0.0916 12 6 3.8529 -4.7987 -0.2006 13 6 5.2291 -4.8615 -0.3249 14 6 5.9786 -3.6995 -0.3400 15 6 5.3546 -2.4721 -0.2316 16 6 6.1722 -1.2063 -0.2475 17 6 6.9531 -1.1172 -1.5624 18 6 7.8401 0.1304 -1.5365 19 8 8.7149 0.0680 -0.4083 20 6 8.0408 0.0308 0.8513 21 6 7.1619 -1.2207 0.9214 22 1 -0.4851 0.8401 -0.0004 23 1 2.1483 -3.5262 0.0005 24 1 3.2703 -5.7081 -0.1887 25 1 5.7193 -5.8200 -0.4104 26 1 7.0530 -3.7518 -0.4367 27 1 5.5114 -0.3442 -0.1553 28 1 7.5758 -2.0045 -1.6770 29 1 6.2550 -1.0506 -2.3968 30 1 7.2143 1.0198 -1.4626 31 1 8.4301 0.1759 -2.4519 32 1 7.4177 0.9189 0.9565 33 1 8.7755 0.0047 1.6561 34 1 6.6132 -1.2282 1.8632 35 1 7.7888 -2.1101 0.8570 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260578202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:31 Heat of formation + Delta-G solvation = -61.957094 kcal Electronic energy + Delta-G solvation = -18298.486410 eV Core-core repulsion = 15454.682556 eV Total energy + Delta-G solvation = -2843.803854 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.82673 -38.61254 -36.59176 -34.07260 -32.40339 -30.91231 -29.60992 -29.08238 -25.33239 -24.63153 -23.32524 -21.92667 -20.88931 -19.47946 -17.86009 -17.27669 -16.04962 -15.83886 -15.12622 -14.76966 -14.41991 -14.25287 -14.03570 -13.70719 -13.40670 -13.32358 -12.42525 -12.33828 -12.25367 -12.22590 -11.46648 -11.33735 -11.13693 -10.89074 -10.82917 -10.50538 -10.48006 -10.28875 -9.89162 -9.53867 -9.20885 -8.90819 -8.12665 -7.36547 -6.44567 -4.11070 2.05079 2.26334 3.17527 3.21335 3.34064 3.99980 4.19155 4.43394 4.79942 4.99492 5.02632 5.12869 5.14993 5.22750 5.44694 5.53288 5.57848 5.68715 5.76172 5.80466 5.86085 6.02663 6.08618 6.10543 6.21313 6.28533 6.41221 6.51807 6.65269 6.81027 7.15671 7.19860 7.30399 7.30743 7.60021 7.77204 8.01903 8.90922 9.53107 10.63365 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.009705 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.470953 B = 2884.462224 C = 4217.358467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.064 3.936 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.215 6.215 10 C 0.163 3.837 11 C -0.220 4.220 12 C -0.079 4.079 13 C -0.204 4.204 14 C -0.074 4.074 15 C -0.149 4.149 16 C -0.039 4.039 17 C -0.144 4.144 18 C 0.060 3.940 19 O -0.388 6.388 20 C 0.060 3.940 21 C -0.144 4.144 22 H 0.279 0.721 23 H 0.132 0.868 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.816 -2.150 -0.639 13.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.121 6.121 10 C 0.111 3.889 11 C -0.239 4.239 12 C -0.097 4.097 13 C -0.223 4.223 14 C -0.092 4.092 15 C -0.151 4.151 16 C -0.057 4.057 17 C -0.182 4.182 18 C -0.017 4.017 19 O -0.307 6.307 20 C -0.017 4.017 21 C -0.182 4.182 22 H 0.089 0.911 23 H 0.150 0.850 24 H 0.127 0.873 25 H 0.124 0.876 26 H 0.130 0.870 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.885 -1.771 -0.629 13.022 hybrid contribution -0.405 0.501 0.023 0.645 sum 12.480 -1.270 -0.606 12.559 Atomic orbital electron populations 1.69642 1.05548 1.28444 1.48157 1.24439 0.94989 0.98692 0.95771 0.86242 0.80390 0.81665 0.78970 1.19861 1.20767 1.18336 1.20763 0.76940 0.96582 1.52194 0.87688 1.83543 1.22449 1.25557 1.80516 1.18906 0.91101 0.85574 0.93336 1.21281 1.01091 0.91917 1.09633 1.20806 0.94368 0.96693 0.97851 1.20645 0.94040 0.97302 1.10349 1.20505 0.98468 0.91395 0.98851 1.18820 0.90644 0.94592 1.11007 1.19886 0.95158 0.96818 0.93841 1.22257 0.98748 0.98708 0.98495 1.22608 0.92920 0.97173 0.88986 1.87862 1.33673 1.94895 1.14246 1.22605 0.96020 0.97221 0.85826 1.22249 0.97801 0.98656 0.99463 0.91062 0.84992 0.87324 0.87554 0.87031 0.89786 0.91167 0.90780 0.93251 0.89165 0.93249 0.89185 0.90837 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.22 13.96 55.48 0.77 -24.44 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.90 21.30 28.62 -169.99 -4.86 16.44 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.39 -10.79 9.95 30.89 0.31 -10.48 16 8 H 0.11 2.99 5.44 -52.49 -0.29 2.71 16 9 O -0.22 -5.51 7.36 0.03 0.00 -5.51 16 10 C 0.16 3.68 6.62 -39.11 -0.26 3.43 16 11 C -0.22 -4.73 9.17 -39.40 -0.36 -5.09 16 12 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 13 C -0.20 -3.42 10.04 -39.53 -0.40 -3.82 16 14 C -0.07 -1.25 8.65 -39.61 -0.34 -1.60 16 15 C -0.15 -2.87 4.81 -104.44 -0.50 -3.37 16 16 C -0.04 -0.67 2.42 -91.59 -0.22 -0.89 16 17 C -0.14 -2.15 5.28 -26.59 -0.14 -2.29 16 18 C 0.06 0.81 6.84 37.21 0.25 1.06 16 19 O -0.39 -5.65 10.77 -35.23 -0.38 -6.03 16 20 C 0.06 0.81 6.84 37.20 0.25 1.06 16 21 C -0.14 -2.14 5.28 -26.60 -0.14 -2.28 16 22 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 23 H 0.13 2.98 5.64 -52.49 -0.30 2.69 16 24 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 25 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 26 H 0.11 1.62 7.05 -52.48 -0.37 1.25 16 27 H 0.08 1.66 7.00 -51.93 -0.36 1.30 16 28 H 0.07 0.99 7.28 -51.92 -0.38 0.61 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.98 7.30 -51.93 -0.38 0.60 16 LS Contribution 286.44 15.07 4.32 4.32 Total: -1.00 -28.89 286.44 -6.78 -35.67 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.59 Total: 3.97 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -2.04 Total: -24.41 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.77 Total: -24.44 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.38 Total: -11.54 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.86 Total: 16.44 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.89 -6.78 -35.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260578202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.287 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds