Wall clock time and date at job start Mon Mar 30 2020 06:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86799 * 120.00276 * 2 1 4 4 H 1.48503 * 109.46815 * 270.00205 * 3 2 1 5 5 H 1.48504 * 109.47212 * 29.99595 * 3 2 1 6 6 H 1.48492 * 109.47289 * 149.99934 * 3 2 1 7 7 C 1.38655 * 119.99590 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00545 * 0.02562 * 7 2 1 9 9 O 1.34834 * 119.99684 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00114 * 185.07486 * 9 7 2 11 11 C 1.38902 * 120.06478 * 354.41164 * 10 9 7 12 12 C 1.38076 * 119.93006 * 179.97438 * 11 10 9 13 13 C 1.38323 * 120.06753 * 359.97438 * 12 11 10 14 14 C 1.38286 * 120.13970 * 0.02562 * 13 12 11 15 15 C 1.38118 * 120.06715 * 359.95982 * 14 13 12 16 16 C 1.50699 * 120.03410 * 179.97438 * 15 14 13 17 17 C 1.53180 * 109.54012 * 59.56138 * 16 15 14 18 18 C 1.53096 * 109.16124 * 183.15621 * 17 16 15 19 19 O 1.42896 * 109.41934 * 57.60223 * 18 17 16 20 20 C 1.42905 * 114.09652 * 298.84544 * 19 18 17 21 21 C 1.53090 * 109.41665 * 61.15635 * 20 19 18 22 22 H 0.97008 * 120.00232 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.03985 * 0.24964 * 11 10 9 24 24 H 1.08002 * 119.96915 * 179.97438 * 12 11 10 25 25 H 1.07999 * 119.93464 * 180.02562 * 13 12 11 26 26 H 1.08004 * 119.96441 * 179.97438 * 14 13 12 27 27 H 1.09005 * 109.54104 * 179.81754 * 16 15 14 28 28 H 1.09009 * 109.51858 * 303.04925 * 17 16 15 29 29 H 1.08995 * 109.52716 * 63.24159 * 17 16 15 30 30 H 1.09003 * 109.47302 * 297.61496 * 18 17 16 31 31 H 1.09003 * 109.47803 * 177.58983 * 18 17 16 32 32 H 1.09000 * 109.48242 * 301.17268 * 20 19 18 33 33 H 1.08997 * 109.47959 * 181.14572 * 20 19 18 34 34 H 1.08999 * 109.52177 * 182.48366 * 21 20 19 35 35 H 1.09005 * 109.51986 * 62.30157 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4471 2.6527 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0087 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9733 -2.4057 -0.1064 11 6 3.2232 -3.5747 -0.0916 12 6 3.8529 -4.7987 -0.2006 13 6 5.2291 -4.8615 -0.3249 14 6 5.9786 -3.6995 -0.3400 15 6 5.3546 -2.4721 -0.2316 16 6 6.1722 -1.2063 -0.2475 17 6 6.9531 -1.1172 -1.5624 18 6 7.8401 0.1304 -1.5365 19 8 8.7149 0.0680 -0.4083 20 6 8.0408 0.0308 0.8513 21 6 7.1619 -1.2207 0.9214 22 1 -0.4851 0.8401 -0.0004 23 1 2.1483 -3.5262 0.0005 24 1 3.2703 -5.7081 -0.1887 25 1 5.7193 -5.8200 -0.4104 26 1 7.0530 -3.7518 -0.4367 27 1 5.5114 -0.3442 -0.1553 28 1 7.5758 -2.0045 -1.6770 29 1 6.2550 -1.0506 -2.3968 30 1 7.2143 1.0198 -1.4626 31 1 8.4301 0.1759 -2.4519 32 1 7.4177 0.9189 0.9565 33 1 8.7755 0.0047 1.6561 34 1 6.6132 -1.2282 1.8632 35 1 7.7888 -2.1101 0.8570 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260578202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:31 Heat of formation + Delta-G solvation = -78.956366 kcal Electronic energy + Delta-G solvation = -18299.223554 eV Core-core repulsion = 15454.682556 eV Total energy + Delta-G solvation = -2844.540998 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30737 -39.95737 -38.22707 -35.37486 -34.45300 -32.01203 -31.04915 -30.66449 -27.28354 -25.92532 -24.44282 -23.46544 -22.39423 -20.81031 -19.74925 -19.00067 -17.27411 -16.91893 -16.81275 -16.17392 -15.89606 -15.73678 -15.61196 -15.30104 -14.85764 -14.67544 -14.23739 -14.05910 -13.71910 -13.36784 -13.06317 -12.71572 -12.59981 -12.52200 -12.23201 -12.06817 -11.81005 -11.69227 -11.41415 -11.04573 -10.93388 -10.45878 -9.61935 -9.02634 -8.51922 -6.23272 0.53411 0.70445 1.27043 1.30944 1.46788 2.24203 2.76303 2.95716 3.04202 3.15263 3.69272 3.87076 3.97940 4.10807 4.23953 4.26871 4.33865 4.33939 4.49726 4.59439 4.72602 4.77393 4.78327 4.82774 4.95125 4.97386 5.10219 5.21982 5.27834 5.33435 5.50927 5.65018 5.75390 5.83043 5.90727 6.23555 6.27904 6.83192 7.58876 8.60114 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.009705 C = 0.006638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.470953 B = 2884.462224 C = 4217.358467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.397 4.397 8 H 0.078 0.922 9 O -0.239 6.239 10 C 0.119 3.881 11 C -0.241 4.241 12 C -0.084 4.084 13 C -0.180 4.180 14 C -0.071 4.071 15 C -0.144 4.144 16 C -0.044 4.044 17 C -0.139 4.139 18 C 0.060 3.940 19 O -0.392 6.392 20 C 0.060 3.940 21 C -0.138 4.138 22 H 0.284 0.716 23 H 0.105 0.895 24 H 0.137 0.863 25 H 0.151 0.849 26 H 0.150 0.850 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.117 0.883 32 H 0.042 0.958 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.476 -3.148 -0.958 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.473 4.473 8 H 0.096 0.904 9 O -0.147 6.147 10 C 0.071 3.929 11 C -0.261 4.261 12 C -0.102 4.102 13 C -0.198 4.198 14 C -0.088 4.088 15 C -0.145 4.145 16 C -0.062 4.062 17 C -0.176 4.176 18 C -0.017 4.017 19 O -0.311 6.311 20 C -0.016 4.016 21 C -0.176 4.176 22 H 0.094 0.906 23 H 0.122 0.878 24 H 0.154 0.846 25 H 0.169 0.831 26 H 0.168 0.832 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.135 0.865 32 H 0.060 0.940 33 H 0.135 0.865 34 H 0.083 0.917 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.572 -2.806 -0.950 16.835 hybrid contribution -1.391 0.513 0.103 1.487 sum 15.181 -2.293 -0.847 15.376 Atomic orbital electron populations 1.69730 1.06893 1.29484 1.50462 1.25221 0.95808 1.01941 0.95702 0.85306 0.78974 0.77716 0.79318 1.19060 1.19313 1.18500 1.20696 0.78347 0.95941 1.52321 0.90410 1.83505 1.20799 1.27165 1.83190 1.19493 0.92793 0.85089 0.95568 1.21326 1.00094 0.93550 1.11099 1.21142 0.95727 0.96146 0.97165 1.21205 0.93176 0.99191 1.06218 1.20960 1.00382 0.90255 0.97242 1.19225 0.89322 0.96743 1.09247 1.19934 0.95279 0.94488 0.96531 1.22218 0.98625 1.00279 0.96526 1.22694 0.93009 0.96091 0.89885 1.87864 1.33929 1.94789 1.14564 1.22688 0.96432 0.96130 0.86394 1.22209 0.97387 1.00227 0.97771 0.90650 0.87755 0.84557 0.83143 0.83246 0.93245 0.89479 0.91707 0.93919 0.86498 0.93972 0.86499 0.91741 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.65 13.96 21.61 0.30 -55.34 16 2 C 0.01 0.66 5.49 84.83 0.47 1.13 16 3 Si 0.96 45.52 28.62 68.60 1.96 47.48 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.40 -23.47 9.95 67.92 0.68 -22.79 16 8 H 0.08 4.86 5.44 -2.91 -0.02 4.84 16 9 O -0.24 -12.88 7.36 -22.80 -0.17 -13.05 16 10 C 0.12 5.57 6.62 22.58 0.15 5.72 16 11 C -0.24 -10.72 9.17 22.39 0.21 -10.52 16 12 C -0.08 -2.88 10.04 22.25 0.22 -2.66 16 13 C -0.18 -5.20 10.04 22.30 0.22 -4.97 16 14 C -0.07 -2.11 8.65 22.25 0.19 -1.92 16 15 C -0.14 -5.37 4.81 -19.75 -0.09 -5.47 16 16 C -0.04 -1.46 2.42 -11.42 -0.03 -1.49 16 17 C -0.14 -3.80 5.28 30.69 0.16 -3.63 16 18 C 0.06 1.45 6.84 72.01 0.49 1.95 16 19 O -0.39 -10.14 10.77 -148.98 -1.60 -11.75 16 20 C 0.06 1.46 6.84 72.01 0.49 1.95 16 21 C -0.14 -3.77 5.28 30.68 0.16 -3.61 16 22 H 0.28 15.69 8.31 -92.70 -0.77 14.92 16 23 H 0.10 5.13 5.64 -2.91 -0.02 5.12 16 24 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 25 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 26 H 0.15 3.41 7.05 -2.91 -0.02 3.39 16 27 H 0.05 1.99 7.00 -2.38 -0.02 1.98 16 28 H 0.09 2.08 7.28 -2.38 -0.02 2.06 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.09 2.07 7.30 -2.38 -0.02 2.05 16 Total: -1.00 -66.28 286.44 4.90 -61.38 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.08 Total: 17.59 kcal Atomic # 6 Polarization: -49.64 SS G_CDS: 3.32 Total: -46.32 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.30 Total: -55.34 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -1.77 Total: -24.79 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.96 Total: 47.48 kcal Total: -66.28 4.90 -61.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260578202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.578 kcal (2) G-P(sol) polarization free energy of solvation -66.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds