Wall clock time and date at job start Mon Mar 30 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.46813 * 2 1 4 4 C 1.50693 * 109.47088 * 119.99312 * 2 1 3 5 5 H 1.08009 * 119.99868 * 114.49288 * 4 2 1 6 6 C 1.37877 * 120.00639 * 294.49095 * 4 2 1 7 7 N 1.31512 * 120.00235 * 164.73018 * 6 4 2 8 8 Si 1.86797 * 119.99761 * 344.73480 * 6 4 2 9 9 H 1.48501 * 109.47544 * 269.99885 * 8 6 4 10 10 H 1.48505 * 109.47029 * 29.99871 * 8 6 4 11 11 H 1.48502 * 109.47231 * 149.99305 * 8 6 4 12 12 C 1.50696 * 109.47346 * 239.99933 * 2 1 3 13 13 C 1.38230 * 120.00061 * 299.72660 * 12 2 1 14 14 C 1.38234 * 120.00622 * 179.81120 * 13 12 2 15 15 C 1.38240 * 119.99147 * 0.41798 * 14 13 12 16 16 C 1.50702 * 119.99460 * 179.79167 * 15 14 13 17 17 C 1.53042 * 113.15633 * 40.39550 * 16 15 14 18 18 S 1.81418 * 89.89336 * 211.85057 * 17 16 15 19 19 C 1.53043 * 113.15285 * 300.01739 * 16 15 14 20 20 C 1.38228 * 120.00412 * 359.80935 * 15 14 13 21 21 C 1.38232 * 119.99994 * 119.99896 * 12 2 1 22 22 H 1.09000 * 109.47229 * 293.78333 * 1 2 3 23 23 H 1.08998 * 109.46629 * 53.78436 * 1 2 3 24 24 H 1.08995 * 109.46577 * 173.78022 * 1 2 3 25 25 H 0.97000 * 120.00060 * 354.90580 * 7 6 4 26 26 H 1.08008 * 119.99798 * 359.97438 * 13 12 2 27 27 H 1.07989 * 120.00514 * 180.20768 * 14 13 12 28 28 H 1.09003 * 112.49435 * 170.23070 * 16 15 14 29 29 H 1.08997 * 113.14600 * 327.11340 * 17 16 15 30 30 H 1.09005 * 113.14834 * 96.59016 * 17 16 15 31 31 H 1.08992 * 113.15151 * 263.40615 * 19 16 15 32 32 H 1.08997 * 113.14552 * 32.85707 * 19 16 15 33 33 H 1.08004 * 120.00134 * 179.97438 * 20 15 14 34 34 H 1.08002 * 120.00442 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.5780 -1.6374 1.1340 6 6 1.7955 -0.1766 2.4796 7 7 1.9571 -0.9188 3.5532 8 14 1.2450 1.6005 2.6469 9 1 2.4364 2.4783 2.7711 10 1 0.4647 1.9922 1.4456 11 1 0.3962 1.7440 3.8569 12 6 2.0324 -0.7104 -1.2304 13 6 1.7032 -2.0354 -1.4463 14 6 2.1607 -2.6861 -2.5769 15 6 2.9548 -2.0139 -3.4873 16 6 3.4575 -2.7246 -4.7175 17 6 2.4090 -3.6393 -5.3548 18 16 3.7255 -4.7606 -5.9031 19 6 4.3221 -3.9457 -4.3959 20 6 3.2879 -0.6903 -3.2690 21 6 2.8271 -0.0386 -2.1403 22 1 -0.3634 0.4144 0.9404 23 1 -0.3632 0.6072 -0.8291 24 1 -0.3632 -1.0216 -0.1113 25 1 2.1708 -1.8608 3.4639 26 1 1.0862 -2.5617 -0.7329 27 1 1.9007 -3.7203 -2.7472 28 1 3.9241 -2.0447 -5.4304 29 1 1.7361 -4.0921 -4.6267 30 1 1.8752 -3.1689 -6.1806 31 1 5.3907 -3.7321 -4.4186 32 1 4.0184 -4.4572 -3.4826 33 1 3.9086 -0.1653 -3.9801 34 1 3.0877 0.9955 -1.9697 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260597113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:28 Heat of formation + Delta-G solvation = 30.750909 kcal Electronic energy + Delta-G solvation = -15453.941162 eV Core-core repulsion = 13056.910300 eV Total energy + Delta-G solvation = -2397.030862 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.44883 -36.72510 -34.08827 -31.60156 -30.44929 -28.60605 -26.40133 -24.78981 -23.44931 -22.42533 -20.48941 -19.33684 -17.43677 -17.02778 -15.99630 -15.12208 -14.75685 -14.33659 -13.81894 -13.54551 -13.20139 -13.14635 -12.97073 -12.63277 -12.30868 -12.27895 -11.67033 -11.63557 -11.22688 -10.86498 -10.67199 -10.59444 -10.34347 -10.03206 -9.85590 -9.58035 -8.92036 -8.44505 -8.32913 -7.95836 -7.94402 -6.45699 -4.11142 1.52973 1.79473 1.88295 1.96615 3.39054 3.41156 3.56225 4.10063 4.47603 4.54752 4.62465 4.81314 5.05372 5.18512 5.22503 5.26055 5.35395 5.45827 5.48652 5.72680 5.76072 6.05304 6.14147 6.29332 6.40748 6.48994 6.66984 6.71664 6.92262 6.94184 7.04634 7.20673 7.51701 7.58019 8.05834 8.34867 8.85957 9.56795 10.90647 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.047963 B = 0.004751 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.649091 B = 5892.008438 C = 6062.134838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.041 3.959 3 H 0.030 0.970 4 C -0.591 4.591 5 H 0.058 0.942 6 C 0.032 3.968 7 N -0.907 5.907 8 Si 1.042 2.958 9 H -0.287 1.287 10 H -0.270 1.270 11 H -0.287 1.287 12 C -0.019 4.019 13 C -0.107 4.107 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.041 4.041 17 C -0.072 4.072 18 S -0.317 6.317 19 C -0.070 4.070 20 C -0.109 4.109 21 C -0.132 4.132 22 H 0.051 0.949 23 H 0.023 0.977 24 H 0.044 0.956 25 H 0.268 0.732 26 H 0.122 0.878 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 -1.644 -15.623 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.022 3.978 3 H 0.048 0.952 4 C -0.629 4.629 5 H 0.076 0.924 6 C -0.172 4.172 7 N -0.541 5.541 8 Si 0.870 3.130 9 H -0.213 1.213 10 H -0.195 1.195 11 H -0.213 1.213 12 C -0.019 4.019 13 C -0.125 4.125 14 C -0.134 4.134 15 C -0.112 4.112 16 C -0.061 4.061 17 C -0.220 4.220 18 S -0.090 6.090 19 C -0.218 4.218 20 C -0.127 4.127 21 C -0.150 4.150 22 H 0.070 0.930 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.868 -1.488 -15.558 15.654 hybrid contribution 0.196 -0.639 -0.231 0.708 sum 1.064 -2.128 -15.790 15.968 Atomic orbital electron populations 1.22181 0.98084 0.99891 0.99387 1.18281 0.92317 0.95645 0.91526 0.95225 1.21955 1.39918 1.10599 0.90431 0.92385 1.25760 0.94209 1.05304 0.91963 1.70806 1.44190 1.08275 1.30793 0.84139 0.77210 0.75692 0.76004 1.21349 1.19520 1.21271 1.20387 0.93026 0.93863 0.94653 1.21039 1.00333 0.94781 0.96387 1.20879 0.98635 0.99083 0.94760 1.19223 1.01509 0.94500 0.96000 1.21337 0.93784 0.95186 0.95763 1.24523 0.99035 0.95841 1.02630 1.88913 1.22570 1.62418 1.35142 1.24506 1.04461 0.96091 0.96724 1.20855 1.00170 0.93917 0.97769 1.21112 0.99357 1.00017 0.94509 0.93045 0.95749 0.93694 0.92185 0.85973 0.87035 0.86998 0.87396 0.88542 0.88522 0.87477 0.86867 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.39 37.16 0.31 -2.58 16 2 C 0.04 0.94 2.03 -92.93 -0.19 0.75 16 3 H 0.03 0.67 6.51 -51.92 -0.34 0.33 16 4 C -0.59 -15.93 8.55 -34.44 -0.29 -16.22 16 5 H 0.06 1.70 7.77 -52.48 -0.41 1.29 16 6 C 0.03 0.91 5.33 -17.82 -0.09 0.81 16 7 N -0.91 -27.26 13.70 55.43 0.76 -26.50 16 8 Si 1.04 24.32 26.17 -169.99 -4.45 19.87 16 9 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.27 -5.72 5.54 56.52 0.31 -5.40 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 C -0.02 -0.38 4.75 -104.63 -0.50 -0.88 16 13 C -0.11 -1.98 8.57 -39.59 -0.34 -2.32 16 14 C -0.12 -1.74 8.60 -39.58 -0.34 -2.09 16 15 C -0.11 -1.51 5.24 -104.62 -0.55 -2.06 16 16 C -0.04 -0.45 3.65 -91.73 -0.33 -0.78 16 17 C -0.07 -0.75 7.33 37.18 0.27 -0.48 16 18 S -0.32 -3.78 24.79 -107.50 -2.67 -6.44 16 19 C -0.07 -0.76 7.42 37.18 0.28 -0.48 16 20 C -0.11 -1.59 9.70 -39.58 -0.38 -1.97 16 21 C -0.13 -2.29 9.67 -39.58 -0.38 -2.67 16 22 H 0.05 1.11 5.06 -51.93 -0.26 0.85 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.04 0.91 7.21 -51.93 -0.37 0.54 16 25 H 0.27 8.04 8.73 -40.82 -0.36 7.69 16 26 H 0.12 2.35 7.56 -52.48 -0.40 1.96 16 27 H 0.11 1.44 6.63 -52.49 -0.35 1.09 16 28 H 0.11 1.10 8.07 -51.93 -0.42 0.68 16 29 H 0.11 1.10 6.39 -51.93 -0.33 0.77 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.11 1.19 7.60 -51.93 -0.39 0.80 16 33 H 0.11 1.34 8.04 -52.48 -0.42 0.92 16 34 H 0.12 1.88 7.95 -52.49 -0.42 1.46 16 LS Contribution 285.56 15.07 4.30 4.30 Total: -1.00 -28.96 285.56 -9.22 -38.18 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.62 Total: 1.56 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: -2.54 Total: -30.97 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.76 Total: -26.50 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.45 Total: 19.87 kcal Atomic # 16 Polarization: -3.78 SS G_CDS: -2.67 Total: -6.44 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.96 -9.22 -38.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.930 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds