Wall clock time and date at job start Mon Mar 30 2020 06:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.46813 * 2 1 4 4 C 1.50693 * 109.47088 * 119.99312 * 2 1 3 5 5 H 1.08009 * 119.99868 * 114.49288 * 4 2 1 6 6 C 1.37877 * 120.00639 * 294.49095 * 4 2 1 7 7 N 1.31512 * 120.00235 * 164.73018 * 6 4 2 8 8 Si 1.86797 * 119.99761 * 344.73480 * 6 4 2 9 9 H 1.48501 * 109.47544 * 269.99885 * 8 6 4 10 10 H 1.48505 * 109.47029 * 29.99871 * 8 6 4 11 11 H 1.48502 * 109.47231 * 149.99305 * 8 6 4 12 12 C 1.50696 * 109.47346 * 239.99933 * 2 1 3 13 13 C 1.38230 * 120.00061 * 299.72660 * 12 2 1 14 14 C 1.38234 * 120.00622 * 179.81120 * 13 12 2 15 15 C 1.38240 * 119.99147 * 0.41798 * 14 13 12 16 16 C 1.50702 * 119.99460 * 179.79167 * 15 14 13 17 17 C 1.53042 * 113.15633 * 40.39550 * 16 15 14 18 18 S 1.81418 * 89.89336 * 211.85057 * 17 16 15 19 19 C 1.53043 * 113.15285 * 300.01739 * 16 15 14 20 20 C 1.38228 * 120.00412 * 359.80935 * 15 14 13 21 21 C 1.38232 * 119.99994 * 119.99896 * 12 2 1 22 22 H 1.09000 * 109.47229 * 293.78333 * 1 2 3 23 23 H 1.08998 * 109.46629 * 53.78436 * 1 2 3 24 24 H 1.08995 * 109.46577 * 173.78022 * 1 2 3 25 25 H 0.97000 * 120.00060 * 354.90580 * 7 6 4 26 26 H 1.08008 * 119.99798 * 359.97438 * 13 12 2 27 27 H 1.07989 * 120.00514 * 180.20768 * 14 13 12 28 28 H 1.09003 * 112.49435 * 170.23070 * 16 15 14 29 29 H 1.08997 * 113.14600 * 327.11340 * 17 16 15 30 30 H 1.09005 * 113.14834 * 96.59016 * 17 16 15 31 31 H 1.08992 * 113.15151 * 263.40615 * 19 16 15 32 32 H 1.08997 * 113.14552 * 32.85707 * 19 16 15 33 33 H 1.08004 * 120.00134 * 179.97438 * 20 15 14 34 34 H 1.08002 * 120.00442 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7102 1.2305 5 1 2.5780 -1.6374 1.1340 6 6 1.7955 -0.1766 2.4796 7 7 1.9571 -0.9188 3.5532 8 14 1.2450 1.6005 2.6469 9 1 2.4364 2.4783 2.7711 10 1 0.4647 1.9922 1.4456 11 1 0.3962 1.7440 3.8569 12 6 2.0324 -0.7104 -1.2304 13 6 1.7032 -2.0354 -1.4463 14 6 2.1607 -2.6861 -2.5769 15 6 2.9548 -2.0139 -3.4873 16 6 3.4575 -2.7246 -4.7175 17 6 2.4090 -3.6393 -5.3548 18 16 3.7255 -4.7606 -5.9031 19 6 4.3221 -3.9457 -4.3959 20 6 3.2879 -0.6903 -3.2690 21 6 2.8271 -0.0386 -2.1403 22 1 -0.3634 0.4144 0.9404 23 1 -0.3632 0.6072 -0.8291 24 1 -0.3632 -1.0216 -0.1113 25 1 2.1708 -1.8608 3.4639 26 1 1.0862 -2.5617 -0.7329 27 1 1.9007 -3.7203 -2.7472 28 1 3.9241 -2.0447 -5.4304 29 1 1.7361 -4.0921 -4.6267 30 1 1.8752 -3.1689 -6.1806 31 1 5.3907 -3.7321 -4.4186 32 1 4.0184 -4.4572 -3.4826 33 1 3.9086 -0.1653 -3.9801 34 1 3.0877 0.9955 -1.9697 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597113.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:27 Heat of formation + Delta-G solvation = 15.825732 kcal Electronic energy + Delta-G solvation = -15454.588366 eV Core-core repulsion = 13056.910300 eV Total energy + Delta-G solvation = -2397.678066 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67120 -37.91844 -35.75491 -33.49439 -31.71948 -30.00041 -27.23595 -26.72988 -24.78878 -23.74028 -21.85472 -20.74003 -19.46284 -18.08222 -17.00908 -16.40847 -16.10536 -15.59524 -15.46435 -14.87447 -14.53910 -14.39903 -14.17876 -13.93909 -13.84141 -13.64742 -13.27742 -12.72931 -12.67958 -12.40283 -12.14830 -11.79905 -11.70389 -11.57106 -11.34767 -11.01381 -10.95308 -10.46006 -9.69857 -9.33906 -8.87166 -8.64380 -6.32950 0.44806 0.61561 0.90906 0.92184 1.50860 1.55346 1.73639 2.53514 2.89231 3.10642 3.60544 3.68769 3.87759 4.04487 4.20291 4.21666 4.25247 4.38553 4.52202 4.62530 4.67038 4.70183 4.78516 4.86769 4.95995 5.04709 5.18790 5.28063 5.31241 5.53970 5.69794 5.72483 5.92090 6.06986 6.15954 6.27781 6.60620 7.43787 8.67212 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.047963 B = 0.004751 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.649091 B = 5892.008438 C = 6062.134838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.038 3.962 3 H 0.035 0.965 4 C -0.585 4.585 5 H 0.016 0.984 6 C -0.022 4.022 7 N -0.944 5.944 8 Si 1.081 2.919 9 H -0.275 1.275 10 H -0.233 1.233 11 H -0.291 1.291 12 C -0.055 4.055 13 C -0.129 4.129 14 C -0.112 4.112 15 C -0.094 4.094 16 C -0.033 4.033 17 C -0.064 4.064 18 S -0.349 6.349 19 C -0.065 4.065 20 C -0.101 4.101 21 C -0.140 4.140 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.251 0.749 26 H 0.098 0.902 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.150 0.850 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.018 -0.236 -18.521 18.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.019 3.981 3 H 0.053 0.947 4 C -0.623 4.623 5 H 0.034 0.966 6 C -0.219 4.219 7 N -0.581 5.581 8 Si 0.902 3.098 9 H -0.201 1.201 10 H -0.157 1.157 11 H -0.217 1.217 12 C -0.055 4.055 13 C -0.147 4.147 14 C -0.130 4.130 15 C -0.096 4.096 16 C -0.052 4.052 17 C -0.211 4.211 18 S -0.122 6.122 19 C -0.213 4.213 20 C -0.119 4.119 21 C -0.158 4.158 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.116 0.884 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.168 0.832 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.033 -0.094 -18.490 18.519 hybrid contribution 0.212 -1.218 0.560 1.357 sum 1.245 -1.312 -17.930 18.021 Atomic orbital electron populations 1.22085 0.96824 1.00265 1.00045 1.18216 0.93369 0.95493 0.90988 0.94702 1.22140 1.38344 1.09035 0.92739 0.96567 1.27209 0.94031 1.08842 0.91815 1.70943 1.47493 1.07603 1.32041 0.83676 0.77701 0.71098 0.77281 1.20133 1.15652 1.21687 1.20250 0.95673 0.94633 0.94961 1.20956 1.01437 0.94757 0.97560 1.21055 0.98205 0.99980 0.93724 1.19505 0.99627 0.94325 0.96190 1.21406 0.93956 0.95195 0.94688 1.24528 0.98550 0.95004 1.03053 1.89120 1.24032 1.63293 1.35741 1.24497 1.05203 0.95674 0.95938 1.21234 0.99392 0.94135 0.97159 1.21280 0.98911 1.00690 0.94961 0.93918 0.92809 0.94157 0.94047 0.88424 0.85040 0.84831 0.87266 0.86968 0.87423 0.87915 0.83192 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.54 8.39 71.98 0.60 -4.93 16 2 C 0.04 1.73 2.03 -12.29 -0.02 1.71 16 3 H 0.03 1.53 6.51 -2.38 -0.02 1.51 16 4 C -0.58 -32.59 8.55 25.60 0.22 -32.37 16 5 H 0.02 1.00 7.77 -2.91 -0.02 0.98 16 6 C -0.02 -1.26 5.33 84.65 0.45 -0.81 16 7 N -0.94 -59.23 13.70 21.45 0.29 -58.94 16 8 Si 1.08 48.82 26.17 68.60 1.80 50.62 16 9 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.23 -9.08 5.54 99.48 0.55 -8.53 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 C -0.06 -2.17 4.75 -19.87 -0.09 -2.26 16 13 C -0.13 -4.80 8.57 22.27 0.19 -4.61 16 14 C -0.11 -3.19 8.60 22.27 0.19 -3.00 16 15 C -0.09 -2.26 5.24 -19.87 -0.10 -2.37 16 16 C -0.03 -0.58 3.65 -11.51 -0.04 -0.62 16 17 C -0.06 -1.10 7.33 72.00 0.53 -0.58 16 18 S -0.35 -7.42 24.79 -56.49 -1.40 -8.82 16 19 C -0.07 -1.23 7.42 72.00 0.53 -0.69 16 20 C -0.10 -2.56 9.70 22.27 0.22 -2.35 16 21 C -0.14 -4.55 9.67 22.27 0.22 -4.33 16 22 H 0.04 1.79 5.06 -2.39 -0.01 1.78 16 23 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.04 1.64 7.21 -2.39 -0.02 1.63 16 25 H 0.25 16.02 8.73 -92.71 -0.81 15.21 16 26 H 0.10 3.99 7.56 -2.91 -0.02 3.97 16 27 H 0.13 3.15 6.63 -2.92 -0.02 3.13 16 28 H 0.13 1.92 8.07 -2.39 -0.02 1.90 16 29 H 0.11 1.90 6.39 -2.39 -0.02 1.88 16 30 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.10 2.05 7.60 -2.39 -0.02 2.03 16 33 H 0.15 2.72 8.04 -2.91 -0.02 2.69 16 34 H 0.13 3.76 7.95 -2.91 -0.02 3.73 16 Total: -1.00 -65.34 285.56 4.46 -60.88 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.89 Total: 13.48 kcal Atomic # 6 Polarization: -60.10 SS G_CDS: 2.88 Total: -57.21 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.29 Total: -58.94 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 1.80 Total: 50.62 kcal Atomic # 16 Polarization: -7.42 SS G_CDS: -1.40 Total: -8.82 kcal Total: -65.34 4.46 -60.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597113.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.704 kcal (2) G-P(sol) polarization free energy of solvation -65.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds