Wall clock time and date at job start Mon Mar 30 2020 06:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46790 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47548 * 120.00188 * 8 6 4 11 11 H 1.48504 * 109.47233 * 240.00380 * 8 6 4 12 12 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 13 13 C 1.38242 * 119.99610 * 59.73074 * 12 2 1 14 14 C 1.38232 * 119.99606 * 179.81075 * 13 12 2 15 15 C 1.38236 * 120.00366 * 0.41196 * 14 13 12 16 16 C 1.50695 * 120.00251 * 179.79077 * 15 14 13 17 17 C 1.53042 * 113.15160 * 40.40278 * 16 15 14 18 18 S 1.81420 * 89.88954 * 211.85087 * 17 16 15 19 19 C 1.53046 * 113.15444 * 300.02587 * 16 15 14 20 20 C 1.38237 * 119.99541 * 359.82105 * 15 14 13 21 21 C 1.38230 * 120.00192 * 239.99840 * 12 2 1 22 22 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 23 23 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 26 26 H 1.07993 * 120.00105 * 359.97438 * 13 12 2 27 27 H 1.08008 * 119.99968 * 180.20788 * 14 13 12 28 28 H 1.09005 * 112.49587 * 170.23923 * 16 15 14 29 29 H 1.09005 * 113.14757 * 327.10610 * 17 16 15 30 30 H 1.09000 * 113.15033 * 96.58982 * 17 16 15 31 31 H 1.08996 * 113.14563 * 263.40736 * 19 16 15 32 32 H 1.09001 * 113.14452 * 32.84659 * 19 16 15 33 33 H 1.08005 * 119.99721 * 179.97438 * 20 15 14 34 34 H 1.07996 * 120.00008 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1456 -2.2874 -3.6039 10 1 1.1661 -1.5865 -4.8162 11 1 3.1466 -0.1870 -4.8166 12 6 2.0324 -0.7104 1.2304 13 6 1.6938 -2.0322 1.4520 14 6 2.1578 -2.6850 2.5786 15 6 2.9534 -2.0136 3.4881 16 6 3.4553 -2.7238 4.7187 17 6 3.8941 -4.1643 4.4452 18 16 3.3744 -4.6365 6.1180 19 6 2.3290 -3.2412 5.6165 20 6 3.2879 -0.6903 3.2690 21 6 2.8272 -0.0386 2.1403 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7094 1.1619 -3.4844 26 1 1.0690 -2.5556 0.7435 27 1 1.8961 -3.7188 2.7501 28 1 4.2023 -2.1431 5.2600 29 1 3.3104 -4.6487 3.6624 30 1 4.9680 -4.2623 4.2864 31 1 2.0920 -2.5660 6.4387 32 1 1.4433 -3.5470 5.0595 33 1 3.9092 -0.1656 3.9797 34 1 3.0884 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260597122.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:30 Heat of formation + Delta-G solvation = 29.657714 kcal Electronic energy + Delta-G solvation = -15409.505732 eV Core-core repulsion = 13012.427465 eV Total energy + Delta-G solvation = -2397.078267 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.34295 -36.60819 -33.99878 -31.26745 -30.33721 -28.15376 -26.36027 -25.17109 -23.39934 -22.34937 -20.52338 -19.38697 -16.98080 -16.31528 -15.93550 -15.10635 -14.69192 -14.22128 -14.13683 -13.45267 -13.10723 -13.02677 -12.85828 -12.54666 -12.04055 -11.94350 -11.48262 -11.31846 -10.99815 -10.95334 -10.69860 -10.58929 -10.30516 -10.11068 -10.05536 -9.43260 -9.03759 -8.41941 -8.33340 -7.92030 -7.77927 -6.05274 -4.12180 1.58413 1.83414 1.98141 2.05329 3.26022 3.34558 3.38638 4.17461 4.40266 4.61086 4.69842 4.86229 5.12860 5.23079 5.25637 5.30401 5.43266 5.50943 5.56202 5.80533 5.93193 6.18910 6.23638 6.54950 6.60657 6.80993 6.93047 7.03886 7.14814 7.17451 7.31900 7.63327 7.70122 7.92704 8.05286 8.34771 8.90769 9.52836 11.00396 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.039448 B = 0.004768 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.630742 B = 5870.768514 C = 6182.644727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.067 3.933 3 H 0.035 0.965 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.024 4.024 13 C -0.109 4.109 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.040 4.040 17 C -0.072 4.072 18 S -0.320 6.320 19 C -0.069 4.069 20 C -0.110 4.110 21 C -0.131 4.131 22 H 0.008 0.992 23 H 0.085 0.915 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -5.453 12.484 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.049 3.951 3 H 0.053 0.947 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.024 4.024 13 C -0.127 4.127 14 C -0.135 4.135 15 C -0.115 4.115 16 C -0.060 4.060 17 C -0.220 4.220 18 S -0.093 6.093 19 C -0.217 4.217 20 C -0.128 4.128 21 C -0.149 4.149 22 H 0.027 0.973 23 H 0.104 0.896 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.140 0.860 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.127 0.873 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.144 -6.313 13.466 15.201 hybrid contribution 0.109 0.202 -1.740 1.755 sum 3.253 -6.111 11.726 13.618 Atomic orbital electron populations 1.21785 0.97566 0.99294 1.00296 1.17939 0.92924 0.95511 0.88714 0.94722 1.21138 1.31158 1.12374 0.89816 0.92408 1.24960 0.95026 0.94987 0.98971 1.69894 1.36707 1.22873 1.23357 0.86532 0.78676 0.79757 0.83052 1.19747 1.20996 1.20993 1.20740 0.92408 0.93822 0.95433 1.21060 1.00202 0.94948 0.96519 1.20875 0.98630 0.98997 0.94987 1.19193 1.01810 0.94576 0.95936 1.21324 0.96101 0.94282 0.94303 1.24539 1.05859 0.97110 0.94458 1.88901 1.47880 1.50104 1.22436 1.24500 1.00526 0.95387 1.01290 1.20857 1.00292 0.93939 0.97713 1.21133 0.99332 1.00006 0.94459 0.97255 0.89619 0.95270 0.92974 0.85967 0.87171 0.87066 0.87349 0.88539 0.88611 0.87527 0.87037 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.78 37.16 0.33 -2.75 16 2 C 0.07 1.63 2.48 -92.92 -0.23 1.40 16 3 H 0.03 0.90 7.88 -51.93 -0.41 0.49 16 4 C -0.51 -13.39 8.25 -34.44 -0.28 -13.68 16 5 H 0.06 1.53 7.61 -52.48 -0.40 1.14 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -24.69 11.32 55.43 0.63 -24.06 16 8 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C -0.02 -0.49 4.74 -104.63 -0.50 -0.99 16 13 C -0.11 -2.03 8.72 -39.58 -0.35 -2.38 16 14 C -0.12 -1.78 8.60 -39.58 -0.34 -2.12 16 15 C -0.11 -1.58 5.24 -104.63 -0.55 -2.13 16 16 C -0.04 -0.45 3.65 -91.73 -0.33 -0.78 16 17 C -0.07 -0.78 7.33 37.18 0.27 -0.51 16 18 S -0.32 -3.83 24.79 -107.50 -2.67 -6.50 16 19 C -0.07 -0.73 7.42 37.18 0.28 -0.46 16 20 C -0.11 -1.65 9.70 -39.58 -0.38 -2.03 16 21 C -0.13 -2.36 9.67 -39.59 -0.38 -2.74 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 24 H 0.03 0.64 7.37 -51.93 -0.38 0.26 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.12 2.33 7.56 -52.49 -0.40 1.93 16 27 H 0.11 1.42 6.63 -52.48 -0.35 1.08 16 28 H 0.11 1.14 8.07 -51.93 -0.42 0.72 16 29 H 0.11 1.16 6.39 -51.93 -0.33 0.83 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 1.13 7.60 -51.93 -0.39 0.73 16 33 H 0.11 1.38 8.04 -52.48 -0.42 0.96 16 34 H 0.12 2.00 7.95 -52.49 -0.42 1.58 16 LS Contribution 290.75 15.07 4.38 4.38 Total: -1.00 -27.46 290.75 -9.88 -37.34 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.64 Total: 0.67 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -2.56 Total: -27.60 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.63 Total: -24.06 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -2.67 Total: -6.50 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.46 -9.88 -37.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597122.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.996 kcal (2) G-P(sol) polarization free energy of solvation -27.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds