Wall clock time and date at job start Mon Mar 30 2020 06:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46790 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47548 * 120.00188 * 8 6 4 11 11 H 1.48504 * 109.47233 * 240.00380 * 8 6 4 12 12 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 13 13 C 1.38242 * 119.99610 * 59.73074 * 12 2 1 14 14 C 1.38232 * 119.99606 * 179.81075 * 13 12 2 15 15 C 1.38236 * 120.00366 * 0.41196 * 14 13 12 16 16 C 1.50695 * 120.00251 * 179.79077 * 15 14 13 17 17 C 1.53042 * 113.15160 * 40.40278 * 16 15 14 18 18 S 1.81420 * 89.88954 * 211.85087 * 17 16 15 19 19 C 1.53046 * 113.15444 * 300.02587 * 16 15 14 20 20 C 1.38237 * 119.99541 * 359.82105 * 15 14 13 21 21 C 1.38230 * 120.00192 * 239.99840 * 12 2 1 22 22 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 23 23 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 26 26 H 1.07993 * 120.00105 * 359.97438 * 13 12 2 27 27 H 1.08008 * 119.99968 * 180.20788 * 14 13 12 28 28 H 1.09005 * 112.49587 * 170.23923 * 16 15 14 29 29 H 1.09005 * 113.14757 * 327.10610 * 17 16 15 30 30 H 1.09000 * 113.15033 * 96.58982 * 17 16 15 31 31 H 1.08996 * 113.14563 * 263.40736 * 19 16 15 32 32 H 1.09001 * 113.14452 * 32.84659 * 19 16 15 33 33 H 1.08005 * 119.99721 * 179.97438 * 20 15 14 34 34 H 1.07996 * 120.00008 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 3.1456 -2.2874 -3.6039 10 1 1.1661 -1.5865 -4.8162 11 1 3.1466 -0.1870 -4.8166 12 6 2.0324 -0.7104 1.2304 13 6 1.6938 -2.0322 1.4520 14 6 2.1578 -2.6850 2.5786 15 6 2.9534 -2.0136 3.4881 16 6 3.4553 -2.7238 4.7187 17 6 3.8941 -4.1643 4.4452 18 16 3.3744 -4.6365 6.1180 19 6 2.3290 -3.2412 5.6165 20 6 3.2879 -0.6903 3.2690 21 6 2.8272 -0.0386 2.1403 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7094 1.1619 -3.4844 26 1 1.0690 -2.5556 0.7435 27 1 1.8961 -3.7188 2.7501 28 1 4.2023 -2.1431 5.2600 29 1 3.3104 -4.6487 3.6624 30 1 4.9680 -4.2623 4.2864 31 1 2.0920 -2.5660 6.4387 32 1 1.4433 -3.5470 5.0595 33 1 3.9092 -0.1656 3.9797 34 1 3.0884 0.9952 1.9692 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597122.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:30 Heat of formation + Delta-G solvation = 17.603495 kcal Electronic energy + Delta-G solvation = -15410.028442 eV Core-core repulsion = 13012.427465 eV Total energy + Delta-G solvation = -2397.600977 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59169 -37.82074 -35.70387 -33.05035 -31.64128 -29.65693 -27.20463 -27.18677 -24.76105 -23.67911 -21.95825 -20.74591 -18.28742 -18.01920 -16.99711 -16.66533 -16.01897 -15.69452 -15.43271 -14.73526 -14.39708 -14.31630 -14.01915 -13.84414 -13.55309 -13.32049 -13.10377 -12.84652 -12.63700 -12.47323 -12.20194 -12.16983 -11.79182 -11.60601 -11.33092 -10.97512 -10.90831 -10.46777 -9.63529 -9.18410 -8.83107 -8.09204 -6.22998 0.51496 0.68128 0.95689 0.96940 1.40255 1.42951 1.53711 2.43126 2.97123 3.18882 3.66566 3.72483 3.93922 4.10503 4.27500 4.27980 4.41304 4.44610 4.57984 4.70377 4.74448 4.84610 4.89568 5.02843 5.09951 5.20384 5.34262 5.36657 5.55866 5.70725 5.73847 5.78265 6.07102 6.15942 6.30605 6.40669 6.86350 7.45041 8.95302 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.039448 B = 0.004768 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.630742 B = 5870.768514 C = 6182.644727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.067 3.933 3 H 0.003 0.997 4 C -0.518 4.518 5 H 0.051 0.949 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.281 1.281 12 C -0.057 4.057 13 C -0.125 4.125 14 C -0.109 4.109 15 C -0.095 4.095 16 C -0.034 4.034 17 C -0.066 4.066 18 S -0.351 6.351 19 C -0.060 4.060 20 C -0.102 4.102 21 C -0.145 4.145 22 H 0.024 0.976 23 H 0.057 0.943 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.108 0.892 27 H 0.137 0.863 28 H 0.129 0.871 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.146 0.854 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -6.712 14.078 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.048 3.952 3 H 0.021 0.979 4 C -0.556 4.556 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.207 1.207 12 C -0.057 4.057 13 C -0.143 4.143 14 C -0.127 4.127 15 C -0.098 4.098 16 C -0.054 4.054 17 C -0.214 4.214 18 S -0.125 6.125 19 C -0.208 4.208 20 C -0.120 4.120 21 C -0.163 4.163 22 H 0.043 0.957 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.126 0.874 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.163 0.837 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.176 -7.578 15.068 17.376 hybrid contribution -0.191 0.574 -2.133 2.217 sum 3.985 -7.004 12.935 15.240 Atomic orbital electron populations 1.21617 0.97480 0.99180 0.99577 1.17787 0.93125 0.93999 0.90245 0.97889 1.21414 1.30863 1.12179 0.91130 0.93083 1.25709 0.95308 0.95704 1.01766 1.70020 1.37728 1.24097 1.23905 0.85582 0.78197 0.78731 0.79629 1.19279 1.20532 1.20711 1.20457 0.95145 0.94901 0.95212 1.20994 1.01062 0.94377 0.97864 1.21089 0.97826 1.00078 0.93697 1.19477 0.99897 0.94157 0.96222 1.21386 0.96727 0.94260 0.92984 1.24548 1.06648 0.96524 0.93634 1.89121 1.48777 1.51077 1.23476 1.24489 1.00081 0.94722 1.01509 1.21174 0.99600 0.94363 0.96852 1.21202 0.99523 1.00188 0.95351 0.95715 0.92395 0.94939 0.92969 0.87417 0.84549 0.85258 0.87076 0.87514 0.87243 0.87276 0.83660 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.78 71.98 0.63 -5.20 16 2 C 0.07 3.35 2.48 -12.29 -0.03 3.32 16 3 H 0.00 0.16 7.88 -2.39 -0.02 0.14 16 4 C -0.52 -28.13 8.25 25.60 0.21 -27.92 16 5 H 0.05 2.77 7.61 -2.91 -0.02 2.75 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -52.44 11.32 21.45 0.24 -52.20 16 8 Si 0.95 43.19 29.54 68.60 2.03 45.22 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C -0.06 -2.36 4.74 -19.87 -0.09 -2.46 16 13 C -0.12 -4.59 8.72 22.27 0.19 -4.40 16 14 C -0.11 -3.05 8.60 22.27 0.19 -2.86 16 15 C -0.10 -2.33 5.24 -19.87 -0.10 -2.43 16 16 C -0.03 -0.61 3.65 -11.51 -0.04 -0.65 16 17 C -0.07 -1.19 7.33 72.00 0.53 -0.66 16 18 S -0.35 -7.38 24.79 -56.49 -1.40 -8.78 16 19 C -0.06 -1.05 7.42 72.00 0.53 -0.52 16 20 C -0.10 -2.75 9.70 22.27 0.22 -2.54 16 21 C -0.14 -5.11 9.67 22.27 0.22 -4.89 16 22 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 24 H 0.03 1.48 7.37 -2.39 -0.02 1.46 16 25 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.11 4.17 7.56 -2.91 -0.02 4.15 16 27 H 0.14 3.07 6.63 -2.91 -0.02 3.05 16 28 H 0.13 1.98 8.07 -2.38 -0.02 1.96 16 29 H 0.11 1.97 6.39 -2.38 -0.02 1.96 16 30 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 1.90 7.60 -2.39 -0.02 1.88 16 33 H 0.15 2.94 8.04 -2.91 -0.02 2.92 16 34 H 0.11 3.94 7.95 -2.91 -0.02 3.92 16 Total: -1.00 -60.23 290.75 4.85 -55.39 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.08 Total: 10.39 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 2.90 Total: -50.02 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.24 Total: -52.20 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -7.38 SS G_CDS: -1.40 Total: -8.78 kcal Total: -60.23 4.85 -55.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597122.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.989 kcal (2) G-P(sol) polarization free energy of solvation -60.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds