Wall clock time and date at job start Mon Mar 30 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 C 1.53175 * 109.54599 * 59.84266 * 14 13 12 16 16 C 1.53105 * 109.15861 * 183.23846 * 15 14 13 17 17 O 1.42906 * 109.48410 * 57.47806 * 16 15 14 18 18 C 1.42908 * 114.09793 * 298.88779 * 17 16 15 19 19 C 1.53090 * 109.41418 * 61.15896 * 18 17 16 20 20 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 21 21 C 1.38101 * 120.07230 * 359.97438 * 20 13 12 22 22 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 23 23 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 24 24 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 25 25 H 1.09004 * 109.54361 * 180.02562 * 14 13 12 26 26 H 1.09002 * 109.52117 * 303.05790 * 15 14 13 27 27 H 1.09002 * 109.52250 * 63.24738 * 15 14 13 28 28 H 1.08994 * 109.40749 * 297.49811 * 16 15 14 29 29 H 1.08995 * 109.49759 * 177.50716 * 16 15 14 30 30 H 1.09006 * 109.47928 * 301.17596 * 18 17 16 31 31 H 1.08999 * 109.49122 * 181.14781 * 18 17 16 32 32 H 1.09005 * 109.52041 * 182.48771 * 19 18 17 33 33 H 1.08996 * 109.57589 * 62.32818 * 19 18 17 34 34 H 1.07999 * 119.96698 * 179.97438 * 20 13 12 35 35 H 1.07992 * 120.03608 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 6 4.0579 -7.7811 -1.7669 16 6 4.8304 -9.1008 -1.8416 17 8 4.4931 -9.9150 -0.7166 18 6 4.8213 -9.3309 0.5457 19 6 4.0469 -8.0216 0.7173 20 6 4.2024 -4.5970 -0.2043 21 6 3.4573 -3.4394 -0.0956 22 1 -0.4850 0.8400 0.0004 23 1 0.3579 -4.7892 -0.2301 24 1 1.6953 -6.8452 -0.4323 25 1 5.4459 -6.8333 -0.4152 26 1 2.9880 -7.9833 -1.8173 27 1 4.3481 -7.1400 -2.5993 28 1 5.9007 -8.8950 -1.8334 29 1 4.5680 -9.6244 -2.7608 30 1 5.8916 -9.1281 0.5851 31 1 4.5523 -10.0200 1.3462 32 1 4.3291 -7.5523 1.6598 33 1 2.9766 -8.2279 0.7192 34 1 5.2812 -4.5470 -0.1945 35 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260601741.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:37 Heat of formation + Delta-G solvation = -64.439888 kcal Electronic energy + Delta-G solvation = -17523.292716 eV Core-core repulsion = 14679.381200 eV Total energy + Delta-G solvation = -2843.911516 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73744 -38.69108 -36.68579 -33.73084 -32.19411 -31.08552 -30.21438 -28.59987 -25.57683 -24.21893 -23.48886 -22.16485 -20.93291 -19.65050 -17.91842 -17.02380 -16.12947 -16.01733 -15.10553 -14.79284 -14.56887 -14.16431 -13.90266 -13.86894 -13.51916 -12.99598 -12.74425 -12.43260 -12.41339 -11.69446 -11.45080 -11.40435 -11.27227 -10.99673 -10.97068 -10.56335 -10.46714 -10.38771 -10.09911 -9.47392 -9.33172 -8.82181 -8.18857 -7.15921 -6.45438 -4.04473 2.20459 2.31035 3.12314 3.13326 3.16247 3.84011 3.96108 4.49415 4.82277 4.93682 4.94828 5.03859 5.10340 5.25237 5.29609 5.37158 5.45795 5.63751 5.64111 5.74073 5.80509 5.92189 5.94662 6.06502 6.19094 6.24412 6.29392 6.51823 6.70669 6.90675 7.06379 7.14656 7.24890 7.38760 7.43774 7.82225 7.99409 9.00048 9.70530 10.72589 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.055997 B = 0.004243 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.909994 B = 6597.936813 C = 6766.299810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.152 3.848 11 C -0.191 4.191 12 C -0.068 4.068 13 C -0.177 4.177 14 C -0.031 4.031 15 C -0.148 4.148 16 C 0.060 3.940 17 O -0.387 6.387 18 C 0.060 3.940 19 C -0.148 4.148 20 C -0.068 4.068 21 C -0.233 4.233 22 H 0.270 0.730 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.384 -13.177 -1.027 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.108 0.892 9 O -0.082 6.082 10 C 0.098 3.902 11 C -0.210 4.210 12 C -0.086 4.086 13 C -0.177 4.177 14 C -0.049 4.049 15 C -0.185 4.185 16 C -0.016 4.016 17 O -0.306 6.306 18 C -0.016 4.016 19 C -0.185 4.185 20 C -0.087 4.087 21 C -0.252 4.252 22 H 0.080 0.920 23 H 0.134 0.866 24 H 0.128 0.872 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.853 -13.125 -1.020 15.865 hybrid contribution 0.615 1.256 0.043 1.399 sum 9.468 -11.869 -0.978 15.214 Atomic orbital electron populations 1.70027 1.05960 1.27778 1.46041 1.25285 0.95834 0.98813 0.96548 0.85788 0.78706 0.79802 0.79169 1.19510 1.20254 1.19517 1.21275 0.91755 0.80874 1.53022 0.89165 1.83978 1.34319 1.11438 1.78454 1.19398 0.90303 0.88067 0.92399 1.20211 0.99528 0.90371 1.10934 1.20440 0.92988 0.96577 0.98594 1.19144 0.93467 0.93425 1.11700 1.19888 0.98522 0.92629 0.93858 1.22290 1.01648 0.96266 0.98330 1.22608 0.98006 0.91855 0.89159 1.87899 1.84422 1.44063 1.14203 1.22610 0.98062 0.95076 0.85879 1.22289 1.01611 0.95390 0.99237 1.20619 0.98141 0.91808 0.98095 1.21141 0.93816 0.98846 1.11432 0.91966 0.86605 0.87233 0.91434 0.90892 0.90847 0.93505 0.89176 0.93487 0.89182 0.90880 0.90881 0.87721 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.39 13.67 55.48 0.76 -24.63 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.39 -11.03 9.49 30.89 0.29 -10.74 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.06 16 9 O -0.18 -5.13 9.76 0.05 0.00 -5.13 16 10 C 0.15 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.19 -4.07 9.99 -39.39 -0.39 -4.46 16 12 C -0.07 -1.21 8.64 -39.60 -0.34 -1.55 16 13 C -0.18 -2.96 4.80 -104.58 -0.50 -3.46 16 14 C -0.03 -0.40 2.45 -91.59 -0.22 -0.63 16 15 C -0.15 -1.78 5.28 -26.59 -0.14 -1.92 16 16 C 0.06 0.64 6.84 37.21 0.25 0.90 16 17 O -0.39 -4.77 10.77 -35.23 -0.38 -5.15 16 18 C 0.06 0.64 6.84 37.20 0.25 0.90 16 19 C -0.15 -1.78 5.28 -26.59 -0.14 -1.92 16 20 C -0.07 -1.25 9.66 -39.61 -0.38 -1.63 16 21 C -0.23 -5.07 9.17 -39.39 -0.36 -5.43 16 22 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 23 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 24 H 0.11 1.69 7.04 -52.49 -0.37 1.32 16 25 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 26 H 0.07 0.94 7.29 -51.93 -0.38 0.56 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.93 7.28 -51.93 -0.38 0.56 16 34 H 0.10 1.63 7.94 -52.49 -0.42 1.21 16 35 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 LS Contribution 289.14 15.07 4.36 4.36 Total: -1.00 -30.49 289.14 -6.94 -37.43 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.62 Total: 3.16 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: -2.04 Total: -25.52 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.76 Total: -24.63 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.38 Total: -10.27 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.49 -6.94 -37.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260601741.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.013 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds