Wall clock time and date at job start Mon Mar 30 2020 06:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38110 * 119.92772 * 179.76614 * 11 10 9 13 13 C 1.38304 * 120.06594 * 0.48719 * 12 11 10 14 14 C 1.50698 * 119.92742 * 179.74699 * 13 12 11 15 15 C 1.53175 * 109.54599 * 59.84266 * 14 13 12 16 16 C 1.53105 * 109.15861 * 183.23846 * 15 14 13 17 17 O 1.42906 * 109.48410 * 57.47806 * 16 15 14 18 18 C 1.42908 * 114.09793 * 298.88779 * 17 16 15 19 19 C 1.53090 * 109.41418 * 61.15896 * 18 17 16 20 20 C 1.38297 * 120.14055 * 359.76875 * 13 12 11 21 21 C 1.38101 * 120.07230 * 359.97438 * 20 13 12 22 22 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 23 23 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 24 24 H 1.07996 * 119.96227 * 180.23396 * 12 11 10 25 25 H 1.09004 * 109.54361 * 180.02562 * 14 13 12 26 26 H 1.09002 * 109.52117 * 303.05790 * 15 14 13 27 27 H 1.09002 * 109.52250 * 63.24738 * 15 14 13 28 28 H 1.08994 * 109.40749 * 297.49811 * 16 15 14 29 29 H 1.08995 * 109.49759 * 177.50716 * 16 15 14 30 30 H 1.09006 * 109.47928 * 301.17596 * 18 17 16 31 31 H 1.08999 * 109.49122 * 181.14781 * 18 17 16 32 32 H 1.09005 * 109.52041 * 182.48771 * 19 18 17 33 33 H 1.08996 * 109.57589 * 62.32818 * 19 18 17 34 34 H 1.07999 * 119.96698 * 179.97438 * 20 13 12 35 35 H 1.07992 * 120.03608 * 179.97438 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8885 -0.3378 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 6 4.0579 -7.7811 -1.7669 16 6 4.8304 -9.1008 -1.8416 17 8 4.4931 -9.9150 -0.7166 18 6 4.8213 -9.3309 0.5457 19 6 4.0469 -8.0216 0.7173 20 6 4.2024 -4.5970 -0.2043 21 6 3.4573 -3.4394 -0.0956 22 1 -0.4850 0.8400 0.0004 23 1 0.3579 -4.7892 -0.2301 24 1 1.6953 -6.8452 -0.4323 25 1 5.4459 -6.8333 -0.4152 26 1 2.9880 -7.9833 -1.8173 27 1 4.3481 -7.1400 -2.5993 28 1 5.9007 -8.8950 -1.8334 29 1 4.5680 -9.6244 -2.7608 30 1 5.8916 -9.1281 0.5851 31 1 4.5523 -10.0200 1.3462 32 1 4.3291 -7.5523 1.6598 33 1 2.9766 -8.2279 0.7192 34 1 5.2812 -4.5470 -0.1945 35 1 3.9527 -2.4845 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260601741.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:36 Heat of formation + Delta-G solvation = -83.110469 kcal Electronic energy + Delta-G solvation = -17524.102333 eV Core-core repulsion = 14679.381200 eV Total energy + Delta-G solvation = -2844.721133 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.06986 -40.09008 -38.26816 -35.02378 -34.11609 -31.94492 -31.84003 -30.07280 -27.48654 -25.45741 -24.37144 -23.77546 -22.36685 -20.88698 -19.70310 -18.82674 -17.22722 -16.85861 -16.52768 -16.36070 -15.85032 -15.56984 -15.52587 -15.37039 -14.73833 -14.46389 -14.26037 -14.00599 -13.52303 -13.34090 -12.95016 -12.68016 -12.54330 -12.48284 -12.16517 -12.15285 -11.87462 -11.54156 -11.23820 -11.00829 -10.76541 -10.40326 -9.79581 -8.88686 -8.47570 -6.16048 0.57546 0.69054 1.34388 1.45227 1.50924 2.17539 2.80545 3.04695 3.14300 3.50311 3.78283 3.88407 4.03915 4.14192 4.17031 4.23472 4.40028 4.43476 4.55173 4.59612 4.74639 4.79635 4.84669 4.86217 5.00920 5.06663 5.13503 5.18102 5.27940 5.29682 5.42215 5.59553 5.70769 5.84805 6.02077 6.22025 6.33818 6.96878 7.78139 8.75618 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.055997 B = 0.004243 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.909994 B = 6597.936813 C = 6766.299810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.102 0.898 9 O -0.234 6.234 10 C 0.109 3.891 11 C -0.204 4.204 12 C -0.062 4.062 13 C -0.148 4.148 14 C -0.031 4.031 15 C -0.147 4.147 16 C 0.061 3.939 17 O -0.404 6.404 18 C 0.061 3.939 19 C -0.147 4.147 20 C -0.068 4.068 21 C -0.241 4.241 22 H 0.273 0.727 23 H 0.110 0.890 24 H 0.139 0.861 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.142 0.858 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.340 -15.034 -1.262 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.838 3.162 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.492 4.492 8 H 0.119 0.881 9 O -0.141 6.141 10 C 0.059 3.941 11 C -0.223 4.223 12 C -0.080 4.080 13 C -0.149 4.149 14 C -0.049 4.049 15 C -0.184 4.184 16 C -0.015 4.015 17 O -0.324 6.324 18 C -0.015 4.015 19 C -0.184 4.184 20 C -0.085 4.085 21 C -0.260 4.260 22 H 0.082 0.918 23 H 0.128 0.872 24 H 0.156 0.844 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.843 -15.044 -1.257 19.188 hybrid contribution -0.192 1.465 0.093 1.480 sum 11.651 -13.579 -1.164 17.930 Atomic orbital electron populations 1.70179 1.08070 1.28882 1.48862 1.26607 0.96849 1.02769 0.95816 0.84645 0.77393 0.74209 0.79945 1.18144 1.19603 1.18107 1.21795 0.92525 0.81484 1.53385 0.88116 1.83940 1.35972 1.12599 1.81575 1.19941 0.91716 0.87916 0.94564 1.20447 0.99828 0.90708 1.11298 1.20767 0.93652 0.96421 0.97114 1.19682 0.93372 0.94799 1.07043 1.20000 0.98775 0.90900 0.95262 1.22271 1.01429 0.97228 0.97516 1.22688 0.98622 0.90835 0.89352 1.87894 1.84729 1.44729 1.15001 1.22694 0.98690 0.94350 0.85773 1.22269 1.01392 0.96062 0.98702 1.21014 0.99871 0.90871 0.96788 1.21263 0.93001 1.00110 1.11612 0.91828 0.87187 0.84370 0.89558 0.91864 0.90554 0.91915 0.87808 0.91896 0.87795 0.90543 0.91843 0.84064 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.14 13.67 21.62 0.30 -56.84 16 2 C -0.02 -1.32 5.49 84.84 0.47 -0.85 16 3 Si 1.02 42.98 29.55 68.60 2.03 45.00 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.42 -24.50 9.49 67.92 0.64 -23.85 16 8 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -14.33 9.76 -22.72 -0.22 -14.55 16 10 C 0.11 5.50 6.65 22.58 0.15 5.65 16 11 C -0.20 -8.87 9.99 22.39 0.22 -8.64 16 12 C -0.06 -2.10 8.64 22.25 0.19 -1.91 16 13 C -0.15 -4.54 4.80 -19.84 -0.10 -4.64 16 14 C -0.03 -0.69 2.45 -11.42 -0.03 -0.72 16 15 C -0.15 -2.99 5.28 30.69 0.16 -2.83 16 16 C 0.06 1.05 6.84 72.02 0.49 1.55 16 17 O -0.40 -8.41 10.77 -148.98 -1.60 -10.02 16 18 C 0.06 1.05 6.84 72.01 0.49 1.54 16 19 C -0.15 -2.98 5.28 30.69 0.16 -2.81 16 20 C -0.07 -2.30 9.66 22.25 0.22 -2.08 16 21 C -0.24 -10.52 9.17 22.39 0.21 -10.32 16 22 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 23 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 24 H 0.14 3.93 7.04 -2.91 -0.02 3.91 16 25 H 0.09 1.69 7.88 -2.38 -0.02 1.67 16 26 H 0.06 1.42 7.29 -2.39 -0.02 1.40 16 27 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.06 1.42 7.28 -2.39 -0.02 1.40 16 34 H 0.14 3.79 7.94 -2.91 -0.02 3.76 16 35 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 Total: -1.00 -70.39 289.14 4.86 -65.53 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 1.08 Total: 20.81 kcal Atomic # 6 Polarization: -53.21 SS G_CDS: 3.28 Total: -49.93 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.30 Total: -56.84 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -1.83 Total: -24.57 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -70.39 4.86 -65.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260601741.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.585 kcal (2) G-P(sol) polarization free energy of solvation -70.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds