Wall clock time and date at job start Mon Mar 30 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47255 * 2 1 4 4 C 1.50703 * 109.46976 * 239.99686 * 2 1 3 5 5 H 1.07998 * 119.99672 * 239.99892 * 4 2 1 6 6 C 1.37872 * 119.99592 * 60.00323 * 4 2 1 7 7 N 1.31512 * 120.00749 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99631 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47326 * 89.99945 * 8 6 4 10 10 H 1.48504 * 109.46877 * 209.99957 * 8 6 4 11 11 H 1.48501 * 109.47183 * 329.99764 * 8 6 4 12 12 C 1.50701 * 109.46848 * 119.99909 * 2 1 3 13 13 N 1.30083 * 124.95552 * 105.02474 * 12 2 1 14 14 C 1.35834 * 109.64781 * 179.97438 * 13 12 2 15 15 C 1.39741 * 133.55747 * 179.97438 * 14 13 12 16 16 C 1.36586 * 119.91476 * 180.02562 * 15 14 13 17 17 C 1.38974 * 120.64690 * 359.95522 * 16 15 14 18 18 F 1.35098 * 119.80364 * 180.02562 * 17 16 15 19 19 C 1.38048 * 120.39755 * 0.04935 * 17 16 15 20 20 C 1.38836 * 119.67028 * 359.96906 * 19 17 16 21 21 N 1.36096 * 124.95383 * 284.97013 * 12 2 1 22 22 H 0.97000 * 126.34948 * 0.06658 * 21 12 2 23 23 H 1.09004 * 109.47103 * 300.00265 * 1 2 3 24 24 H 1.09007 * 109.47290 * 60.00181 * 1 2 3 25 25 H 1.09004 * 109.47694 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47337 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47291 * 299.99815 * 3 2 1 28 28 H 1.09004 * 109.47281 * 59.99844 * 3 2 1 29 29 H 0.96997 * 120.00365 * 180.02562 * 7 6 4 30 30 H 1.07996 * 120.04221 * 359.97438 * 15 14 13 31 31 H 1.08003 * 119.67818 * 179.97438 * 16 15 14 32 32 H 1.07999 * 120.16859 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7119 12 6 2.0322 -0.7104 1.2305 13 7 2.5412 -1.9074 1.2444 14 6 2.8907 -2.2404 2.5141 15 6 3.4658 -3.3774 3.0878 16 6 3.7028 -3.4163 4.4324 17 6 3.3782 -2.3333 5.2405 18 9 3.6204 -2.3899 6.5684 19 6 2.8092 -1.2001 4.6947 20 6 2.5616 -1.1448 3.3297 21 7 2.0204 -0.1927 2.4891 22 1 1.6922 0.6827 2.7477 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 0.7081 1.1608 -3.4844 30 1 3.7218 -4.2247 2.4690 31 1 4.1470 -4.2972 4.8719 32 1 2.5581 -0.3608 5.3262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260614768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:32 Heat of formation + Delta-G solvation = 1.838182 kcal Electronic energy + Delta-G solvation = -17591.420288 eV Core-core repulsion = 14659.215251 eV Total energy + Delta-G solvation = -2932.205037 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.85604 -43.08008 -38.49088 -36.73079 -34.10982 -33.16566 -31.02321 -29.44876 -27.68858 -27.13944 -24.50813 -23.49862 -22.60170 -20.91816 -19.34421 -18.18019 -18.04792 -17.16734 -16.70067 -16.64038 -16.20877 -15.93755 -15.12492 -15.05375 -14.62046 -14.11179 -13.97283 -13.74136 -13.26057 -13.02936 -12.61602 -12.56349 -12.44925 -12.27442 -12.16703 -11.82519 -11.78933 -11.50444 -10.99844 -10.60993 -10.39136 -9.43220 -8.95279 -8.03143 -6.13652 -0.13207 0.40920 1.45580 1.48172 1.57472 1.86529 1.94546 2.50827 2.77753 3.23177 3.27665 3.40030 3.68969 4.05997 4.25433 4.33302 4.37770 4.64561 4.79689 4.80022 4.86703 4.98076 5.00963 5.13051 5.23223 5.30843 5.50134 5.55752 5.71375 5.86823 5.98009 6.08738 6.34227 6.54560 6.89845 7.16613 7.53250 8.98190 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.039844 B = 0.005829 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.570190 B = 4802.364429 C = 5298.107964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.126 3.874 3 C -0.124 4.124 4 C -0.508 4.508 5 H 0.055 0.945 6 C 0.027 3.973 7 N -0.904 5.904 8 Si 0.948 3.052 9 H -0.280 1.280 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.327 3.673 13 N -0.525 5.525 14 C 0.005 3.995 15 C -0.049 4.049 16 C -0.149 4.149 17 C 0.100 3.900 18 F -0.136 7.136 19 C -0.141 4.141 20 C 0.048 3.952 21 N -0.591 5.591 22 H 0.432 0.568 23 H 0.037 0.963 24 H 0.080 0.920 25 H 0.019 0.981 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.262 0.738 30 H 0.147 0.853 31 H 0.170 0.830 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 -2.015 12.977 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.124 3.876 3 C -0.182 4.182 4 C -0.547 4.547 5 H 0.073 0.927 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.775 3.225 9 H -0.206 1.206 10 H -0.206 1.206 11 H -0.205 1.205 12 C 0.060 3.940 13 N -0.244 5.244 14 C -0.114 4.114 15 C -0.068 4.068 16 C -0.170 4.170 17 C 0.079 3.921 18 F -0.115 7.115 19 C -0.163 4.163 20 C -0.063 4.063 21 N -0.202 5.202 22 H 0.273 0.727 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.165 0.835 31 H 0.187 0.813 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.401 -2.489 12.188 12.669 hybrid contribution -0.008 0.547 -0.098 0.556 sum 2.393 -1.942 12.090 12.476 Atomic orbital electron populations 1.21699 0.95411 0.99227 1.01416 1.17077 0.93180 0.92038 0.85300 1.21740 0.98457 0.96271 1.01764 1.21182 1.31321 1.12090 0.90100 0.92694 1.25399 0.95319 0.95685 1.00785 1.69848 1.37307 1.23319 1.23844 0.85707 0.78527 0.78452 0.79790 1.20608 1.20590 1.20513 1.24559 0.93482 0.89581 0.86398 1.70567 1.19757 1.13870 1.20187 1.19915 1.04819 0.96663 0.89981 1.20059 0.96576 0.95715 0.94443 1.20795 1.04215 0.99517 0.92424 1.17159 1.01957 0.95349 0.77632 1.91486 1.92433 1.96766 1.30809 1.19839 1.05348 1.00044 0.91088 1.18675 1.02949 0.91684 0.92991 1.43166 1.53058 1.17294 1.06701 0.72670 0.94372 0.90162 0.96132 0.95737 0.90206 0.93891 0.92821 0.83485 0.81253 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.23 71.98 0.59 -4.71 16 2 C 0.13 5.88 0.72 -53.67 -0.04 5.84 16 3 C -0.12 -5.32 8.11 71.98 0.58 -4.73 16 4 C -0.51 -27.23 7.88 25.60 0.20 -27.03 16 5 H 0.05 3.15 6.97 -2.91 -0.02 3.13 16 6 C 0.03 1.43 5.15 84.65 0.44 1.86 16 7 N -0.90 -47.12 9.35 21.45 0.20 -46.92 16 8 Si 0.95 43.19 29.54 68.60 2.03 45.21 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 C 0.33 14.17 6.40 137.91 0.88 15.05 16 13 N -0.52 -24.23 10.06 -179.91 -1.81 -26.04 16 14 C 0.01 0.20 7.23 39.44 0.29 0.48 16 15 C -0.05 -1.46 10.05 22.25 0.22 -1.24 16 16 C -0.15 -3.60 9.94 22.06 0.22 -3.38 16 17 C 0.10 2.53 7.29 22.40 0.16 2.69 16 18 F -0.14 -3.24 17.26 44.97 0.78 -2.46 16 19 C -0.14 -3.78 10.05 22.37 0.22 -3.55 16 20 C 0.05 1.63 7.30 38.86 0.28 1.91 16 21 N -0.59 -20.34 6.04 -179.21 -1.08 -21.42 16 22 H 0.43 11.82 8.43 -92.71 -0.78 11.04 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.08 3.89 6.07 -2.38 -0.01 3.87 16 25 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 3.78 6.07 -2.39 -0.01 3.76 16 28 H 0.04 1.49 7.60 -2.39 -0.02 1.47 16 29 H 0.26 13.15 8.31 -92.71 -0.77 12.38 16 30 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 31 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -59.78 273.95 4.54 -55.24 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.37 Total: 13.20 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 4.06 Total: -16.81 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -2.69 Total: -94.39 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -59.78 4.54 -55.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260614768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.076 kcal (2) G-P(sol) polarization free energy of solvation -59.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds