Wall clock time and date at job start Mon Mar 30 2020 06:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00262 * 2 1 4 4 H 1.48492 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46628 * 299.99657 * 3 2 1 6 6 H 1.48503 * 109.47044 * 59.99161 * 3 2 1 7 7 C 1.37876 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.47401 * 179.97438 * 9 7 2 11 11 C 1.38280 * 119.97389 * 270.02744 * 10 9 7 12 12 C 1.38247 * 120.11226 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.05283 * 359.68048 * 12 11 10 14 14 C 1.38711 * 119.94133 * 0.57128 * 13 12 11 15 15 O 1.35902 * 120.05417 * 179.72297 * 14 13 12 16 16 C 1.42898 * 117.00180 * 5.20999 * 15 14 13 17 17 H 1.09003 * 110.45335 * 33.55021 * 16 15 14 18 18 C 1.54506 * 110.51270 * 156.15510 * 16 15 14 19 19 C 1.54470 * 104.06514 * 118.78466 * 18 16 15 20 20 O 1.44432 * 104.80274 * 23.97894 * 19 18 16 21 21 C 1.44779 * 105.29280 * 319.45255 * 20 19 18 22 22 C 1.38125 * 119.96922 * 90.00376 * 10 9 7 23 23 H 0.96996 * 119.99411 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47007 * 60.00100 * 9 7 2 25 25 H 1.09000 * 109.47343 * 300.00119 * 9 7 2 26 26 H 1.08002 * 119.94560 * 359.97438 * 11 10 9 27 27 H 1.07994 * 119.97775 * 179.97438 * 12 11 10 28 28 H 1.07995 * 120.02892 * 180.29528 * 13 12 11 29 29 H 1.09003 * 110.51322 * 237.43107 * 18 16 15 30 30 H 1.09001 * 110.50997 * 0.13646 * 18 16 15 31 31 H 1.09000 * 110.37913 * 142.80959 * 19 18 16 32 32 H 1.09006 * 110.37375 * 265.04101 * 19 18 16 33 33 H 1.09001 * 110.42928 * 281.77617 * 21 20 19 34 34 H 1.09009 * 110.48776 * 159.32420 * 21 20 19 35 35 H 1.08004 * 120.02573 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6447 0.0005 11 6 2.6797 -4.1694 -1.1973 12 6 3.5776 -5.2206 -1.2007 13 6 4.0334 -5.7451 -0.0064 14 6 3.5801 -5.2239 1.1965 15 8 4.0225 -5.7418 2.3725 16 6 5.0389 -6.7436 2.2987 17 1 5.7040 -6.5501 1.4571 18 6 5.8391 -6.8013 3.6191 19 6 5.5989 -8.2351 4.1413 20 8 5.2672 -9.0053 2.9654 21 6 4.4069 -8.1480 2.1774 22 6 2.6786 -4.1692 1.1971 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.3280 -3.7579 -2.1319 27 1 3.9268 -5.6290 -2.1374 28 1 4.7385 -6.5631 -0.0094 29 1 6.8999 -6.6363 3.4304 30 1 5.4579 -6.0673 4.3291 31 1 6.5032 -8.6256 4.6081 32 1 4.7712 -8.2469 4.8506 33 1 3.3959 -8.1456 2.5848 34 1 4.3967 -8.4708 1.1363 35 1 2.3273 -3.7589 2.1324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260648884.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:14 Heat of formation + Delta-G solvation = -66.979705 kcal Electronic energy + Delta-G solvation = -17399.772528 eV Core-core repulsion = 14555.750877 eV Total energy + Delta-G solvation = -2844.021651 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35392 -38.79144 -36.92314 -33.34858 -31.78152 -31.20200 -29.60538 -28.72330 -27.02674 -23.59227 -23.25846 -21.93931 -21.77850 -19.91437 -17.80590 -16.74208 -16.32629 -15.93121 -15.58719 -15.32894 -15.10822 -14.54411 -14.28561 -13.63441 -13.32055 -12.96856 -12.63927 -12.51219 -12.14363 -11.81357 -11.60536 -11.31701 -11.23421 -11.03673 -10.76130 -10.56093 -10.54841 -10.33796 -10.05690 -9.58376 -9.45308 -8.44835 -8.06531 -7.66015 -6.06647 -4.10383 1.97758 2.02061 3.19889 3.28458 3.36087 3.41308 3.82590 4.26061 4.34164 4.47503 4.55326 4.66706 4.94731 5.00347 5.24369 5.28655 5.31721 5.42952 5.44337 5.54605 5.60184 5.68286 5.87207 5.98250 6.12191 6.28295 6.47739 6.62379 6.79813 7.01226 7.13511 7.35909 7.51524 7.78869 7.84834 7.89611 8.28320 8.94845 9.53573 11.03500 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.035944 B = 0.004484 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.803845 B = 6242.593442 C = 6595.983347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.058 0.942 9 C 0.046 3.954 10 C 0.004 3.996 11 C -0.156 4.156 12 C -0.086 4.086 13 C -0.237 4.237 14 C 0.117 3.883 15 O -0.306 6.306 16 C 0.053 3.947 17 H 0.089 0.911 18 C -0.153 4.153 19 C 0.045 3.955 20 O -0.373 6.373 21 C 0.025 3.975 22 C -0.151 4.151 23 H 0.262 0.738 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.895 -14.369 4.312 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.009 3.991 10 C 0.004 3.996 11 C -0.174 4.174 12 C -0.104 4.104 13 C -0.256 4.256 14 C 0.073 3.927 15 O -0.221 6.221 16 C -0.005 4.005 17 H 0.106 0.894 18 C -0.191 4.191 19 C -0.031 4.031 20 O -0.292 6.292 21 C -0.052 4.052 22 C -0.170 4.170 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.756 -14.425 4.460 17.976 hybrid contribution 0.512 1.093 -0.149 1.216 sum 10.268 -13.332 4.311 17.371 Atomic orbital electron populations 1.69967 1.06033 1.26765 1.50486 1.25006 0.94889 0.99276 0.95122 0.86470 0.80140 0.83419 0.77652 1.19660 1.20900 1.20904 1.21071 0.93113 0.89733 1.51047 0.92353 1.18408 0.92534 0.89464 0.98660 1.20541 0.94378 0.93722 0.90986 1.21049 1.00123 0.97776 0.98484 1.20825 0.96708 0.96199 0.96679 1.20947 1.06886 1.05240 0.92488 1.19005 0.95599 0.94158 0.83958 1.86127 1.53522 1.53286 1.29124 1.23699 0.89517 0.87747 0.99517 0.89359 1.23007 1.00681 0.98665 0.96748 1.23424 1.01086 0.89827 0.88790 1.89195 1.67810 1.38667 1.33508 1.24062 0.94956 0.88916 0.97310 1.20388 1.00526 0.96613 0.99472 0.92850 0.94955 0.95059 0.86168 0.86730 0.86632 0.89402 0.88673 0.88711 0.91756 0.90747 0.88324 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.31 9.09 -34.44 -0.31 -14.62 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.05 1.18 5.10 -29.03 -0.15 1.04 16 10 C 0.00 0.09 5.07 -104.65 -0.53 -0.44 16 11 C -0.16 -3.03 9.70 -39.56 -0.38 -3.41 16 12 C -0.09 -1.41 10.04 -39.60 -0.40 -1.81 16 13 C -0.24 -3.76 8.87 -39.43 -0.35 -4.11 16 14 C 0.12 2.06 6.66 -39.22 -0.26 1.80 16 15 O -0.31 -4.84 9.77 -19.43 -0.19 -5.03 16 16 C 0.05 0.64 2.94 -25.17 -0.07 0.57 16 17 H 0.09 1.03 6.26 -51.93 -0.33 0.71 16 18 C -0.15 -1.50 6.90 -25.17 -0.17 -1.67 16 19 C 0.05 0.42 7.63 37.93 0.29 0.70 16 20 O -0.37 -4.39 11.66 -35.23 -0.41 -4.80 16 21 C 0.02 0.28 7.12 37.93 0.27 0.55 16 22 C -0.15 -3.08 9.64 -39.43 -0.38 -3.46 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.03 0.86 8.08 -51.93 -0.42 0.44 16 25 H 0.03 0.84 8.09 -51.93 -0.42 0.42 16 26 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 27 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 28 H 0.12 1.50 5.54 -52.49 -0.29 1.21 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.94 8.00 -51.93 -0.42 0.53 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.10 1.02 7.73 -51.92 -0.40 0.62 16 35 H 0.13 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 296.24 15.07 4.46 4.46 Total: -1.00 -30.38 296.24 -7.74 -38.12 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.77 Total: -0.37 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -2.55 Total: -23.32 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.53 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.60 Total: -9.82 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.38 -7.74 -38.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260648884.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.856 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds