Wall clock time and date at job start Mon Mar 30 2020 06:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00262 * 2 1 4 4 H 1.48492 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46628 * 299.99657 * 3 2 1 6 6 H 1.48503 * 109.47044 * 59.99161 * 3 2 1 7 7 C 1.37876 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.50705 * 109.47401 * 179.97438 * 9 7 2 11 11 C 1.38280 * 119.97389 * 270.02744 * 10 9 7 12 12 C 1.38247 * 120.11226 * 180.02562 * 11 10 9 13 13 C 1.38174 * 120.05283 * 359.68048 * 12 11 10 14 14 C 1.38711 * 119.94133 * 0.57128 * 13 12 11 15 15 O 1.35902 * 120.05417 * 179.72297 * 14 13 12 16 16 C 1.42898 * 117.00180 * 5.20999 * 15 14 13 17 17 H 1.09003 * 110.45335 * 33.55021 * 16 15 14 18 18 C 1.54506 * 110.51270 * 156.15510 * 16 15 14 19 19 C 1.54470 * 104.06514 * 118.78466 * 18 16 15 20 20 O 1.44432 * 104.80274 * 23.97894 * 19 18 16 21 21 C 1.44779 * 105.29280 * 319.45255 * 20 19 18 22 22 C 1.38125 * 119.96922 * 90.00376 * 10 9 7 23 23 H 0.96996 * 119.99411 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47007 * 60.00100 * 9 7 2 25 25 H 1.09000 * 109.47343 * 300.00119 * 9 7 2 26 26 H 1.08002 * 119.94560 * 359.97438 * 11 10 9 27 27 H 1.07994 * 119.97775 * 179.97438 * 12 11 10 28 28 H 1.07995 * 120.02892 * 180.29528 * 13 12 11 29 29 H 1.09003 * 110.51322 * 237.43107 * 18 16 15 30 30 H 1.09001 * 110.50997 * 0.13646 * 18 16 15 31 31 H 1.09000 * 110.37913 * 142.80959 * 19 18 16 32 32 H 1.09006 * 110.37375 * 265.04101 * 19 18 16 33 33 H 1.09001 * 110.42928 * 281.77617 * 21 20 19 34 34 H 1.09009 * 110.48776 * 159.32420 * 21 20 19 35 35 H 1.08004 * 120.02573 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6447 0.0005 11 6 2.6797 -4.1694 -1.1973 12 6 3.5776 -5.2206 -1.2007 13 6 4.0334 -5.7451 -0.0064 14 6 3.5801 -5.2239 1.1965 15 8 4.0225 -5.7418 2.3725 16 6 5.0389 -6.7436 2.2987 17 1 5.7040 -6.5501 1.4571 18 6 5.8391 -6.8013 3.6191 19 6 5.5989 -8.2351 4.1413 20 8 5.2672 -9.0053 2.9654 21 6 4.4069 -8.1480 2.1774 22 6 2.6786 -4.1692 1.1971 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.3280 -3.7579 -2.1319 27 1 3.9268 -5.6290 -2.1374 28 1 4.7385 -6.5631 -0.0094 29 1 6.8999 -6.6363 3.4304 30 1 5.4579 -6.0673 4.3291 31 1 6.5032 -8.6256 4.6081 32 1 4.7712 -8.2469 4.8506 33 1 3.3959 -8.1456 2.5848 34 1 4.3967 -8.4708 1.1363 35 1 2.3273 -3.7589 2.1324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260648884.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:14 Heat of formation + Delta-G solvation = -85.169240 kcal Electronic energy + Delta-G solvation = -17400.561285 eV Core-core repulsion = 14555.750877 eV Total energy + Delta-G solvation = -2844.810408 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48486 -39.92802 -38.20986 -35.35330 -32.95879 -32.72502 -30.82831 -29.75472 -28.86223 -25.39729 -24.23314 -23.29998 -22.97422 -21.18716 -19.06990 -18.50179 -17.70566 -16.99801 -16.73724 -16.65061 -16.43052 -16.13843 -15.42729 -14.99024 -14.53059 -14.27822 -14.19246 -14.08247 -13.30162 -13.22107 -13.13699 -12.75864 -12.60669 -12.42937 -12.36365 -12.21530 -11.83232 -11.67701 -11.42060 -11.32076 -10.89322 -10.62746 -9.62528 -9.07630 -8.22314 -6.35501 0.52057 0.57441 1.39139 1.39550 1.53270 2.08678 2.38928 2.93790 3.00156 3.09110 3.43185 3.68759 3.79741 3.98293 4.06807 4.16248 4.21614 4.34144 4.47941 4.56912 4.62257 4.72579 4.76995 4.78472 4.88849 4.96179 5.13520 5.28872 5.33952 5.38834 5.56125 5.62274 5.72241 5.91903 6.04242 6.15670 6.52244 6.76824 7.33137 8.87793 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.035944 B = 0.004484 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.803845 B = 6242.593442 C = 6595.983347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.054 3.946 10 C -0.024 4.024 11 C -0.172 4.172 12 C -0.071 4.071 13 C -0.222 4.222 14 C 0.123 3.877 15 O -0.318 6.318 16 C 0.041 3.959 17 H 0.101 0.899 18 C -0.151 4.151 19 C 0.043 3.957 20 O -0.386 6.386 21 C 0.026 3.974 22 C -0.175 4.175 23 H 0.266 0.734 24 H 0.010 0.990 25 H 0.002 0.998 26 H 0.119 0.881 27 H 0.157 0.843 28 H 0.155 0.845 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.620 -15.587 3.980 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.018 3.982 10 C -0.024 4.024 11 C -0.190 4.190 12 C -0.089 4.089 13 C -0.240 4.240 14 C 0.079 3.921 15 O -0.232 6.232 16 C -0.015 4.015 17 H 0.119 0.881 18 C -0.189 4.189 19 C -0.033 4.033 20 O -0.305 6.305 21 C -0.051 4.051 22 C -0.194 4.194 23 H 0.075 0.925 24 H 0.028 0.972 25 H 0.020 0.980 26 H 0.137 0.863 27 H 0.175 0.825 28 H 0.173 0.827 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.488 -15.660 4.138 20.453 hybrid contribution -0.294 1.337 0.023 1.369 sum 12.194 -14.323 4.160 19.266 Atomic orbital electron populations 1.70086 1.07674 1.27971 1.51220 1.25930 0.95785 1.03133 0.94467 0.85366 0.78870 0.78596 0.78040 1.18971 1.19897 1.20188 1.21369 0.93071 0.91134 1.51118 0.92769 1.18143 0.92912 0.91104 0.96088 1.20194 0.95393 0.93913 0.92932 1.21116 1.01399 0.99192 0.97281 1.21219 0.94621 0.94277 0.98739 1.21365 1.06197 1.05210 0.91255 1.18938 0.94581 0.93145 0.85479 1.86128 1.54551 1.54144 1.28408 1.24067 0.88961 0.87067 1.01406 0.88143 1.23072 1.01400 0.98944 0.95441 1.23607 1.02336 0.89265 0.88127 1.89188 1.67744 1.39232 1.34322 1.24043 0.94430 0.88503 0.98111 1.20254 1.02378 0.98487 0.98250 0.92487 0.97163 0.97954 0.86294 0.82524 0.82724 0.87386 0.89145 0.86241 0.91623 0.91773 0.86936 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.53 -30.74 9.09 25.60 0.23 -30.51 16 8 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 9 C 0.05 2.98 5.10 29.10 0.15 3.13 16 10 C -0.02 -1.10 5.07 -19.88 -0.10 -1.20 16 11 C -0.17 -6.62 9.70 22.28 0.22 -6.40 16 12 C -0.07 -2.11 10.04 22.26 0.22 -1.88 16 13 C -0.22 -6.30 8.87 22.37 0.20 -6.11 16 14 C 0.12 4.22 6.66 22.50 0.15 4.37 16 15 O -0.32 -9.62 9.77 -92.45 -0.90 -10.52 16 16 C 0.04 0.89 2.94 31.61 0.09 0.98 16 17 H 0.10 1.93 6.26 -2.39 -0.01 1.91 16 18 C -0.15 -2.55 6.90 31.61 0.22 -2.33 16 19 C 0.04 0.67 7.63 72.48 0.55 1.22 16 20 O -0.39 -8.01 11.66 -148.98 -1.74 -9.75 16 21 C 0.03 0.53 7.12 72.48 0.52 1.05 16 22 C -0.17 -7.37 9.64 22.36 0.22 -7.16 16 23 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 24 H 0.01 0.58 8.08 -2.38 -0.02 0.56 16 25 H 0.00 0.13 8.09 -2.39 -0.02 0.11 16 26 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 27 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 28 H 0.16 3.20 5.54 -2.91 -0.02 3.18 16 29 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 1.63 8.00 -2.39 -0.02 1.61 16 31 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 34 H 0.11 1.94 7.73 -2.38 -0.02 1.92 16 35 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -67.74 296.24 3.87 -63.87 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.07 Total: 9.99 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 3.13 Total: -44.08 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.13 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -2.64 Total: -20.27 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -67.74 3.87 -63.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260648884.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.295 kcal (2) G-P(sol) polarization free energy of solvation -67.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds