Wall clock time and date at job start Mon Mar 30 2020 06:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36622 * 119.67389 * 2 1 4 4 C 1.39701 * 119.91723 * 180.02562 * 3 2 1 5 5 N 1.35840 * 133.56303 * 180.33579 * 4 3 2 6 6 C 1.30078 * 109.64614 * 180.12304 * 5 4 3 7 7 C 1.50699 * 124.95022 * 179.82983 * 6 5 4 8 8 H 1.09002 * 109.46959 * 334.69270 * 7 6 5 9 9 C 1.53000 * 109.47083 * 214.69056 * 7 6 5 10 10 C 1.50703 * 109.47227 * 94.69272 * 7 6 5 11 11 H 1.08003 * 119.99742 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99873 * 180.02562 * 10 7 6 13 13 N 1.31509 * 120.00433 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99975 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47061 * 59.99778 * 14 12 10 16 16 H 1.48494 * 109.47452 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46988 * 300.00348 * 14 12 10 18 18 N 1.36096 * 110.10174 * 359.56070 * 6 5 4 19 19 H 0.97004 * 126.35234 * 180.23021 * 18 6 5 20 20 C 1.38056 * 107.30335 * 0.27013 * 18 6 5 21 21 C 1.38792 * 134.12011 * 180.02562 * 20 18 6 22 22 C 1.38095 * 119.67116 * 180.02562 * 21 20 18 23 23 F 1.35095 * 119.79923 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47171 * 90.00371 * 1 2 3 25 25 H 1.08999 * 109.47153 * 209.99486 * 1 2 3 26 26 H 1.08998 * 109.47483 * 330.00047 * 1 2 3 27 27 H 1.07998 * 120.03874 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.46724 * 60.00424 * 9 7 6 29 29 H 1.09001 * 109.47194 * 179.97438 * 9 7 6 30 30 H 1.08992 * 109.47399 * 299.99938 * 9 7 6 31 31 H 0.97001 * 120.00323 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.16229 * 359.95825 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1871 0.0000 4 6 3.5804 1.1930 -0.0005 5 7 4.5123 2.1813 0.0051 6 6 5.7036 1.6590 -0.0012 7 6 6.9903 2.4436 -0.0015 8 1 6.8153 3.4281 -0.4355 9 6 8.0406 1.7005 -0.8294 10 6 7.4842 2.5991 1.4138 11 1 6.9227 2.1720 2.2316 12 6 8.6527 3.2865 1.6645 13 7 9.3366 3.8061 0.6686 14 14 9.2646 3.4799 3.4188 15 1 9.5032 2.1388 4.0105 16 1 10.5318 4.2540 3.4187 17 1 8.2447 4.2009 4.2221 18 7 5.6189 0.3007 -0.0015 19 1 6.3628 -0.3219 -0.0025 20 6 4.2778 -0.0271 -0.0011 21 6 3.5757 -1.2243 -0.0007 22 6 2.1949 -1.2071 -0.0009 23 9 1.5089 -2.3709 -0.0011 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8900 0.5138 27 1 1.6387 2.1196 0.0004 28 1 7.6834 1.5881 -1.8531 29 1 8.9711 2.2683 -0.8300 30 1 8.2155 0.7161 -0.3955 31 1 10.1586 4.2901 0.8451 32 1 4.1067 -2.1647 -0.0013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260651087.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:22 Heat of formation + Delta-G solvation = 4.810851 kcal Electronic energy + Delta-G solvation = -17277.301428 eV Core-core repulsion = 14345.225296 eV Total energy + Delta-G solvation = -2932.076132 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.72144 -41.64882 -37.32756 -34.36557 -32.77694 -31.71020 -30.53510 -28.64335 -26.05749 -25.38873 -23.20055 -21.90474 -20.93496 -19.70648 -18.03998 -16.94909 -16.26845 -15.95277 -15.58324 -15.09522 -14.72658 -14.43191 -13.89031 -13.33667 -13.24063 -12.90962 -12.86074 -12.66230 -12.03435 -11.66078 -11.21911 -11.13155 -11.03989 -10.72550 -10.59160 -10.41250 -10.27034 -10.05745 -9.41894 -9.26852 -8.57466 -8.01367 -7.57081 -6.20880 -4.29960 1.15041 1.60499 3.22285 3.25013 3.27964 3.34917 3.37629 4.05570 4.30544 4.51977 4.58898 4.84612 5.07564 5.13511 5.44213 5.50835 5.57711 5.63267 5.85655 5.93493 6.03849 6.15707 6.41351 6.47372 6.59348 6.65068 6.77858 6.87665 7.13605 7.40571 7.55072 7.77839 7.91127 8.06605 8.56506 8.70092 9.36070 10.84704 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.038656 B = 0.005095 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.171831 B = 5494.022631 C = 5567.899661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C -0.046 4.046 4 C 0.054 3.946 5 N -0.513 5.513 6 C 0.355 3.645 7 C 0.107 3.893 8 H 0.069 0.931 9 C -0.142 4.142 10 C -0.516 4.516 11 H 0.058 0.942 12 C 0.069 3.931 13 N -0.885 5.885 14 Si 0.901 3.099 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.274 1.274 18 N -0.596 5.596 19 H 0.422 0.578 20 C 0.049 3.951 21 C -0.139 4.139 22 C 0.092 3.908 23 F -0.142 7.142 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.135 0.865 28 H 0.016 0.984 29 H 0.099 0.901 30 H 0.027 0.973 31 H 0.266 0.734 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.066 -8.247 -2.283 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.135 4.135 3 C -0.066 4.066 4 C -0.066 4.066 5 N -0.233 5.233 6 C 0.090 3.910 7 C 0.087 3.913 8 H 0.087 0.913 9 C -0.200 4.200 10 C -0.555 4.555 11 H 0.076 0.924 12 C -0.134 4.134 13 N -0.523 5.523 14 Si 0.729 3.271 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.200 1.200 18 N -0.206 5.206 19 H 0.261 0.739 20 C -0.063 4.063 21 C -0.161 4.161 22 C 0.071 3.929 23 F -0.121 7.121 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.152 0.848 28 H 0.035 0.965 29 H 0.118 0.882 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.170 -7.280 -2.320 12.720 hybrid contribution 0.904 -1.347 0.987 1.899 sum -9.266 -8.627 -1.333 12.730 Atomic orbital electron populations 1.20628 0.90240 1.02912 1.02371 1.19211 0.96643 0.91248 1.06444 1.19639 0.90365 0.97353 0.99233 1.19299 0.94131 0.88930 1.04225 1.70639 0.97483 1.29877 1.25265 1.25073 0.97058 0.79269 0.89649 1.17751 0.81939 0.93688 0.97933 0.91343 1.21881 1.03336 0.99384 0.95418 1.20812 1.07781 1.36310 0.90566 0.92395 1.24888 0.96206 0.94704 0.97627 1.69836 1.16298 1.35377 1.30786 0.86496 0.78132 0.78333 0.84169 1.20216 1.21011 1.19981 1.43290 1.05537 1.09161 1.62598 0.73852 1.18479 0.85196 0.95841 1.06734 1.19592 0.91958 0.96279 1.08245 1.16832 0.88621 0.80890 1.06512 1.91432 1.79588 1.46713 1.94352 0.91290 0.91553 0.91185 0.84764 0.96458 0.88243 0.95367 0.92403 0.85255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.81 36.01 0.35 -0.77 16 2 C -0.13 -1.89 5.85 -104.95 -0.61 -2.50 16 3 C -0.05 -0.75 9.66 -39.62 -0.38 -1.13 16 4 C 0.05 1.06 7.23 -84.68 -0.61 0.44 16 5 N -0.51 -11.56 11.27 -8.22 -0.09 -11.65 16 6 C 0.36 7.78 6.75 -154.80 -1.05 6.73 16 7 C 0.11 2.55 2.77 -92.92 -0.26 2.29 16 8 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 9 C -0.14 -3.04 8.70 37.16 0.32 -2.72 16 10 C -0.52 -13.39 8.55 -34.44 -0.29 -13.69 16 11 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 12 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 13 N -0.89 -23.48 11.32 55.43 0.63 -22.85 16 14 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 N -0.60 -11.06 5.97 -8.00 -0.05 -11.10 16 19 H 0.42 6.69 8.09 -40.82 -0.33 6.36 16 20 C 0.05 0.89 7.30 -83.99 -0.61 0.28 16 21 C -0.14 -2.14 10.05 -39.43 -0.40 -2.54 16 22 C 0.09 1.38 7.23 -39.38 -0.28 1.09 16 23 F -0.14 -2.01 16.43 2.25 0.04 -1.97 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.68 7.61 -51.93 -0.40 0.28 16 26 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 30 H 0.03 0.54 7.36 -51.93 -0.38 0.16 16 31 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 32 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 278.86 15.07 4.20 4.20 Total: -1.00 -27.86 278.86 -7.71 -35.57 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.50 Total: 3.30 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.92 Total: -10.83 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.49 Total: -45.61 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.86 -7.71 -35.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260651087.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.382 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds