Wall clock time and date at job start Mon Mar 30 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36622 * 119.67389 * 2 1 4 4 C 1.39701 * 119.91723 * 180.02562 * 3 2 1 5 5 N 1.35840 * 133.56303 * 180.33579 * 4 3 2 6 6 C 1.30078 * 109.64614 * 180.12304 * 5 4 3 7 7 C 1.50699 * 124.95022 * 179.82983 * 6 5 4 8 8 H 1.09002 * 109.46959 * 334.69270 * 7 6 5 9 9 C 1.53000 * 109.47083 * 214.69056 * 7 6 5 10 10 C 1.50703 * 109.47227 * 94.69272 * 7 6 5 11 11 H 1.08003 * 119.99742 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99873 * 180.02562 * 10 7 6 13 13 N 1.31509 * 120.00433 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99975 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47061 * 59.99778 * 14 12 10 16 16 H 1.48494 * 109.47452 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.46988 * 300.00348 * 14 12 10 18 18 N 1.36096 * 110.10174 * 359.56070 * 6 5 4 19 19 H 0.97004 * 126.35234 * 180.23021 * 18 6 5 20 20 C 1.38056 * 107.30335 * 0.27013 * 18 6 5 21 21 C 1.38792 * 134.12011 * 180.02562 * 20 18 6 22 22 C 1.38095 * 119.67116 * 180.02562 * 21 20 18 23 23 F 1.35095 * 119.79923 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47171 * 90.00371 * 1 2 3 25 25 H 1.08999 * 109.47153 * 209.99486 * 1 2 3 26 26 H 1.08998 * 109.47483 * 330.00047 * 1 2 3 27 27 H 1.07998 * 120.03874 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.46724 * 60.00424 * 9 7 6 29 29 H 1.09001 * 109.47194 * 179.97438 * 9 7 6 30 30 H 1.08992 * 109.47399 * 299.99938 * 9 7 6 31 31 H 0.97001 * 120.00323 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.16229 * 359.95825 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1871 0.0000 4 6 3.5804 1.1930 -0.0005 5 7 4.5123 2.1813 0.0051 6 6 5.7036 1.6590 -0.0012 7 6 6.9903 2.4436 -0.0015 8 1 6.8153 3.4281 -0.4355 9 6 8.0406 1.7005 -0.8294 10 6 7.4842 2.5991 1.4138 11 1 6.9227 2.1720 2.2316 12 6 8.6527 3.2865 1.6645 13 7 9.3366 3.8061 0.6686 14 14 9.2646 3.4799 3.4188 15 1 9.5032 2.1388 4.0105 16 1 10.5318 4.2540 3.4187 17 1 8.2447 4.2009 4.2221 18 7 5.6189 0.3007 -0.0015 19 1 6.3628 -0.3219 -0.0025 20 6 4.2778 -0.0271 -0.0011 21 6 3.5757 -1.2243 -0.0007 22 6 2.1949 -1.2071 -0.0009 23 9 1.5089 -2.3709 -0.0011 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8900 0.5138 27 1 1.6387 2.1196 0.0004 28 1 7.6834 1.5881 -1.8531 29 1 8.9711 2.2683 -0.8300 30 1 8.2155 0.7161 -0.3955 31 1 10.1586 4.2901 0.8451 32 1 4.1067 -2.1647 -0.0013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260651087.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:21 Heat of formation + Delta-G solvation = -10.322513 kcal Electronic energy + Delta-G solvation = -17277.957660 eV Core-core repulsion = 14345.225296 eV Total energy + Delta-G solvation = -2932.732364 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.89526 -43.09898 -38.63137 -36.17989 -34.19935 -33.25805 -32.08528 -29.98453 -27.31980 -27.24964 -24.73542 -23.27604 -22.31925 -21.32472 -19.36992 -18.65627 -17.93287 -17.23207 -16.80694 -16.65760 -16.23511 -15.91300 -15.13038 -14.95080 -14.67791 -14.20417 -14.07030 -13.93058 -13.52162 -12.93676 -12.90656 -12.83823 -12.40685 -12.38969 -12.24281 -12.00357 -11.90868 -11.72790 -11.11507 -10.94295 -10.55340 -9.28987 -8.99641 -8.17756 -6.34176 -0.16754 0.34337 1.42460 1.44601 1.51663 1.79090 1.95082 2.41217 2.69887 3.09287 3.23050 3.32099 3.64199 3.89541 4.19950 4.28680 4.31971 4.58596 4.72308 4.75620 4.84591 4.87168 4.92864 4.96804 5.14406 5.20013 5.36088 5.45908 5.55358 5.65786 5.86589 5.90576 6.12315 6.47420 6.68699 7.02880 7.34668 8.86223 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.038656 B = 0.005095 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.171831 B = 5494.022631 C = 5567.899661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.121 4.121 3 C -0.053 4.053 4 C 0.017 3.983 5 N -0.544 5.544 6 C 0.333 3.667 7 C 0.110 3.890 8 H 0.032 0.968 9 C -0.129 4.129 10 C -0.531 4.531 11 H 0.045 0.955 12 C 0.028 3.972 13 N -0.906 5.906 14 Si 0.959 3.041 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.279 1.279 18 N -0.585 5.585 19 H 0.433 0.567 20 C 0.042 3.958 21 C -0.137 4.137 22 C 0.099 3.901 23 F -0.133 7.133 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.149 0.851 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.268 0.732 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.478 -9.992 -1.880 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.124 4.124 3 C -0.072 4.072 4 C -0.102 4.102 5 N -0.265 5.265 6 C 0.066 3.934 7 C 0.090 3.910 8 H 0.050 0.950 9 C -0.187 4.187 10 C -0.570 4.570 11 H 0.063 0.937 12 C -0.173 4.173 13 N -0.544 5.544 14 Si 0.784 3.216 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.204 1.204 18 N -0.196 5.196 19 H 0.274 0.726 20 C -0.069 4.069 21 C -0.159 4.159 22 C 0.078 3.922 23 F -0.111 7.111 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.166 0.834 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.588 -9.052 -1.924 14.830 hybrid contribution 1.161 -0.875 0.832 1.675 sum -10.427 -9.927 -1.092 14.438 Atomic orbital electron populations 1.20747 0.87348 1.04207 1.03820 1.19593 0.98623 0.90230 1.03959 1.19888 0.89180 0.98867 0.99298 1.19731 0.95322 0.88911 1.06200 1.70494 0.98455 1.31845 1.25717 1.24460 0.96230 0.80554 0.92128 1.17483 0.83683 0.92836 0.97011 0.94957 1.21690 1.01410 0.99426 0.96188 1.20985 1.07979 1.36622 0.91381 0.93665 1.25570 0.96310 0.94387 1.01006 1.69943 1.16518 1.35659 1.32306 0.85606 0.77562 0.78480 0.79978 1.19414 1.20246 1.20438 1.43070 1.06343 1.08100 1.62068 0.72617 1.18684 0.84685 0.96364 1.07192 1.19831 0.92315 0.96351 1.07406 1.16961 0.88603 0.81402 1.05217 1.91465 1.79308 1.46231 1.94121 0.89625 0.90619 0.89618 0.83361 0.94778 0.90560 0.93675 0.92261 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 9.81 71.24 0.70 -1.16 16 2 C -0.12 -3.11 5.85 -20.08 -0.12 -3.23 16 3 C -0.05 -1.63 9.66 22.25 0.21 -1.42 16 4 C 0.02 0.67 7.23 39.44 0.29 0.95 16 5 N -0.54 -25.17 11.27 -179.91 -2.03 -27.20 16 6 C 0.33 14.94 6.75 137.91 0.93 15.87 16 7 C 0.11 5.43 2.77 -12.29 -0.03 5.40 16 8 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 9 C -0.13 -5.60 8.70 71.98 0.63 -4.98 16 10 C -0.53 -28.27 8.55 25.60 0.22 -28.05 16 11 H 0.05 2.46 7.74 -2.91 -0.02 2.44 16 12 C 0.03 1.47 5.30 84.65 0.45 1.92 16 13 N -0.91 -48.94 11.32 21.44 0.24 -48.70 16 14 Si 0.96 41.94 29.54 68.60 2.03 43.96 16 15 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 N -0.58 -21.56 5.97 -179.22 -1.07 -22.63 16 19 H 0.43 13.40 8.09 -92.70 -0.75 12.65 16 20 C 0.04 1.48 7.30 38.85 0.28 1.76 16 21 C -0.14 -3.89 10.05 22.37 0.22 -3.67 16 22 C 0.10 2.65 7.23 22.40 0.16 2.81 16 23 F -0.13 -3.26 16.43 44.97 0.74 -2.52 16 24 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.07 1.24 7.61 -2.39 -0.02 1.22 16 26 H 0.08 1.29 8.07 -2.39 -0.02 1.27 16 27 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 3.69 6.07 -2.39 -0.01 3.68 16 30 H 0.04 1.75 7.36 -2.39 -0.02 1.73 16 31 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 32 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -60.61 278.86 4.25 -56.36 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.40 Total: 14.52 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 3.94 Total: -13.79 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -2.86 Total: -98.53 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.74 Total: -2.52 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -60.61 4.25 -56.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260651087.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.033 kcal (2) G-P(sol) polarization free energy of solvation -60.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds