Wall clock time and date at job start Mon Mar 30 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36626 * 119.67768 * 2 1 4 4 C 1.39698 * 119.91677 * 179.97438 * 3 2 1 5 5 N 1.35840 * 133.56077 * 179.97438 * 4 3 2 6 6 C 1.30082 * 109.64790 * 180.02562 * 5 4 3 7 7 C 1.50694 * 124.95171 * 179.97438 * 6 5 4 8 8 H 1.09005 * 109.47327 * 25.03038 * 7 6 5 9 9 C 1.53003 * 109.47188 * 145.02927 * 7 6 5 10 10 C 1.50702 * 109.47561 * 265.02758 * 7 6 5 11 11 H 1.08004 * 119.99546 * 0.02562 * 10 7 6 12 12 C 1.37873 * 120.00215 * 179.97438 * 10 7 6 13 13 N 1.31509 * 120.00220 * 0.02562 * 12 10 7 14 14 Si 1.86802 * 119.99953 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.47056 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47143 * 120.00100 * 14 12 10 17 17 H 1.48502 * 109.47279 * 240.00461 * 14 12 10 18 18 N 1.36094 * 110.09736 * 0.02562 * 6 5 4 19 19 H 0.97008 * 126.34647 * 180.02562 * 18 6 5 20 20 C 1.38053 * 107.30767 * 359.97438 * 18 6 5 21 21 C 1.38794 * 134.12019 * 179.97438 * 20 18 6 22 22 C 1.38092 * 119.66930 * 179.69684 * 21 20 18 23 23 F 1.35102 * 119.80393 * 180.30501 * 22 21 20 24 24 H 1.09002 * 109.47152 * 90.00138 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00239 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00219 * 1 2 3 27 27 H 1.08002 * 120.03565 * 359.97438 * 3 2 1 28 28 H 1.09006 * 109.47075 * 300.00182 * 9 7 6 29 29 H 1.08992 * 109.47166 * 59.99623 * 9 7 6 30 30 H 1.08998 * 109.47176 * 180.02562 * 9 7 6 31 31 H 0.97004 * 120.00330 * 179.97438 * 13 12 10 32 32 H 1.07992 * 120.16152 * 0.04623 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1835 1.1870 0.0000 4 6 3.5805 1.1929 0.0005 5 7 4.5124 2.1811 0.0002 6 6 5.7038 1.6588 0.0005 7 6 6.9904 2.4434 -0.0002 8 1 6.8159 3.4279 0.4338 9 6 8.0414 1.7003 0.8270 10 6 7.4833 2.5987 -1.4159 11 1 6.9208 2.1723 -2.2333 12 6 8.6517 3.2861 -1.6675 13 7 9.3364 3.8057 -0.6722 14 14 9.2623 3.4792 -3.4223 15 1 8.3179 2.8085 -4.3517 16 1 9.3477 4.9226 -3.7607 17 1 10.6062 2.8604 -3.5498 18 7 5.6189 0.3005 0.0004 19 1 6.3629 -0.3220 0.0009 20 6 4.2778 -0.0272 0.0007 21 6 3.5757 -1.2244 0.0003 22 6 2.1949 -1.2071 0.0071 23 9 1.5088 -2.3709 0.0129 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 1.6388 2.1197 -0.0004 28 1 7.6849 1.5879 1.8510 29 1 8.2158 0.7159 0.3930 30 1 8.9718 2.2680 0.8268 31 1 10.1586 4.2890 -0.8492 32 1 4.1067 -2.1648 0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260651098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:24 Heat of formation + Delta-G solvation = 4.712466 kcal Electronic energy + Delta-G solvation = -17277.518319 eV Core-core repulsion = 14345.437920 eV Total energy + Delta-G solvation = -2932.080399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.71994 -41.64922 -37.32727 -34.36795 -32.77707 -31.71097 -30.53658 -28.64320 -26.05758 -25.39304 -23.20167 -21.90531 -20.93569 -19.70802 -18.04035 -16.95343 -16.26815 -15.95351 -15.58429 -15.09633 -14.72288 -14.43509 -13.89155 -13.33538 -13.22435 -12.91999 -12.88018 -12.64897 -12.04049 -11.67167 -11.21920 -11.12817 -11.06213 -10.69750 -10.58638 -10.42206 -10.26458 -10.06458 -9.42044 -9.24824 -8.58544 -8.01328 -7.57083 -6.21470 -4.30297 1.15058 1.60511 3.19937 3.24771 3.29500 3.36252 3.37308 4.05565 4.30374 4.51952 4.58872 4.84592 5.07409 5.13291 5.44044 5.50830 5.57687 5.63520 5.85610 5.93506 6.03770 6.15688 6.41307 6.47238 6.59256 6.64964 6.77813 6.87626 7.13557 7.40602 7.54876 7.77864 7.91053 8.06328 8.56425 8.70381 9.35882 10.84217 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.038663 B = 0.005095 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.040973 B = 5493.976678 C = 5568.701592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.132 4.132 3 C -0.046 4.046 4 C 0.054 3.946 5 N -0.513 5.513 6 C 0.355 3.645 7 C 0.106 3.894 8 H 0.069 0.931 9 C -0.142 4.142 10 C -0.514 4.514 11 H 0.059 0.941 12 C 0.068 3.932 13 N -0.885 5.885 14 Si 0.901 3.099 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.596 5.596 19 H 0.422 0.578 20 C 0.049 3.951 21 C -0.139 4.139 22 C 0.092 3.908 23 F -0.142 7.142 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.135 0.865 28 H 0.016 0.984 29 H 0.027 0.973 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 -8.264 2.261 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.135 4.135 3 C -0.066 4.066 4 C -0.066 4.066 5 N -0.233 5.233 6 C 0.090 3.910 7 C 0.086 3.914 8 H 0.087 0.913 9 C -0.200 4.200 10 C -0.553 4.553 11 H 0.077 0.923 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.728 3.272 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.208 1.208 18 N -0.206 5.206 19 H 0.261 0.739 20 C -0.063 4.063 21 C -0.161 4.161 22 C 0.071 3.929 23 F -0.121 7.121 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.152 0.848 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.196 -7.301 2.304 12.750 hybrid contribution 0.919 -1.332 -0.990 1.897 sum -9.277 -8.633 1.314 12.740 Atomic orbital electron populations 1.20630 0.90240 1.02867 1.02418 1.19214 0.96643 0.91248 1.06437 1.19639 0.90364 0.97353 0.99238 1.19297 0.94130 0.88930 1.04219 1.70640 0.97483 1.29876 1.25284 1.25068 0.97056 0.79270 0.89643 1.17762 0.81950 0.93704 0.97975 0.91333 1.21880 1.03332 0.99379 0.95423 1.20891 1.07715 1.36131 0.90580 0.92285 1.24893 0.96235 0.94718 0.97638 1.69857 1.16231 1.35516 1.30682 0.86384 0.78548 0.78146 0.84092 1.19733 1.20644 1.20837 1.43288 1.05538 1.09160 1.62596 0.73853 1.18477 0.85195 0.95842 1.06736 1.19591 0.91958 0.96279 1.08240 1.16834 0.88620 0.80891 1.06514 1.91434 1.79579 1.46721 1.94353 0.91265 0.91198 0.91559 0.84764 0.96453 0.95366 0.88244 0.92519 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 9.81 36.01 0.35 -0.77 16 2 C -0.13 -1.89 5.85 -104.94 -0.61 -2.50 16 3 C -0.05 -0.75 9.66 -39.62 -0.38 -1.13 16 4 C 0.05 1.06 7.23 -84.68 -0.61 0.45 16 5 N -0.51 -11.56 11.27 -8.22 -0.09 -11.65 16 6 C 0.36 7.78 6.75 -154.80 -1.05 6.73 16 7 C 0.11 2.53 2.77 -92.92 -0.26 2.27 16 8 H 0.07 1.79 8.14 -51.93 -0.42 1.36 16 9 C -0.14 -3.04 8.70 37.16 0.32 -2.72 16 10 C -0.51 -13.35 8.55 -34.44 -0.29 -13.64 16 11 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 12 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 13 N -0.89 -23.47 11.32 55.43 0.63 -22.84 16 14 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 N -0.60 -11.05 5.97 -8.00 -0.05 -11.10 16 19 H 0.42 6.68 8.09 -40.82 -0.33 6.35 16 20 C 0.05 0.89 7.30 -83.99 -0.61 0.28 16 21 C -0.14 -2.14 10.05 -39.43 -0.40 -2.53 16 22 C 0.09 1.37 7.23 -39.38 -0.28 1.09 16 23 F -0.14 -2.01 16.43 2.25 0.04 -1.97 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 26 H 0.07 0.67 7.60 -51.93 -0.39 0.28 16 27 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.03 0.54 7.36 -51.93 -0.38 0.16 16 30 H 0.10 2.36 6.07 -51.93 -0.32 2.05 16 31 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 278.85 15.07 4.20 4.20 Total: -1.00 -27.92 278.85 -7.71 -35.63 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -3.50 Total: 3.22 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -3.92 Total: -10.82 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: 0.49 Total: -45.59 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.92 -7.71 -35.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260651098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.345 kcal (2) G-P(sol) polarization free energy of solvation -27.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds