Wall clock time and date at job start Mon Mar 30 2020 06:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00027 * 2 1 4 4 H 1.48501 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46927 * 299.99678 * 3 2 1 6 6 H 1.48503 * 109.47331 * 59.99650 * 3 2 1 7 7 C 1.37882 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47478 * 180.02562 * 9 7 2 11 11 C 1.38262 * 119.94294 * 89.99572 * 10 9 7 12 12 C 1.38146 * 120.05821 * 180.02562 * 11 10 9 13 13 C 1.38732 * 119.93975 * 0.02562 * 12 11 10 14 14 O 1.35908 * 120.05592 * 179.97438 * 13 12 11 15 15 C 1.42902 * 116.99297 * 354.35240 * 14 13 12 16 16 H 1.08991 * 110.83692 * 327.41047 * 15 14 13 17 17 C 1.54809 * 110.90200 * 203.75870 * 15 14 13 18 18 C 1.54103 * 104.18980 * 220.92326 * 17 15 14 19 19 O 1.43741 * 107.29141 * 357.97280 * 18 17 15 20 20 C 1.44377 * 106.97616 * 26.51299 * 19 18 17 21 21 C 1.38729 * 119.89042 * 0.27082 * 13 12 11 22 22 C 1.38147 * 119.94160 * 359.46787 * 21 13 12 23 23 H 0.96996 * 120.00156 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47448 * 60.00294 * 9 7 2 25 25 H 1.08999 * 109.47564 * 300.00127 * 9 7 2 26 26 H 1.08005 * 119.97615 * 359.97438 * 11 10 9 27 27 H 1.07999 * 120.02958 * 180.02562 * 12 11 10 28 28 H 1.09002 * 110.48904 * 102.24981 * 17 15 14 29 29 H 1.09001 * 110.49047 * 339.60068 * 17 15 14 30 30 H 1.08997 * 109.87694 * 117.39769 * 18 17 15 31 31 H 1.08994 * 109.87744 * 238.39779 * 18 17 15 32 32 H 1.08999 * 110.62085 * 78.43604 * 20 19 18 33 33 H 1.09006 * 110.62189 * 201.27861 * 20 19 18 34 34 H 1.08004 * 120.03051 * 179.72590 * 21 13 12 35 35 H 1.08002 * 119.97226 * 180.27397 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2303 -3.6447 0.0027 11 6 2.6788 -4.1681 1.2013 12 6 3.5768 -5.2179 1.2050 13 6 4.0290 -5.7464 0.0047 14 8 4.9129 -6.7788 0.0056 15 6 5.4296 -7.1892 1.2731 16 1 5.5162 -6.3394 1.9501 17 6 6.7921 -7.9055 1.1085 18 6 6.7200 -9.0860 2.0965 19 8 5.4577 -8.9963 2.7781 20 6 4.5498 -8.3038 1.8944 21 6 3.5822 -5.2154 -1.1966 22 6 2.6800 -4.1692 -1.1948 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.3274 -3.7555 2.1355 27 1 3.9265 -5.6266 2.1415 28 1 7.6099 -7.2355 1.3737 29 1 6.9112 -8.2691 0.0878 30 1 6.7816 -10.0286 1.5528 31 1 7.5372 -9.0185 2.8147 32 1 4.1794 -8.9764 1.1208 33 1 3.7208 -7.8734 2.4562 34 1 3.9362 -5.6223 -2.1323 35 1 2.3285 -3.7584 -2.1297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260654201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:15 Heat of formation + Delta-G solvation = -66.663210 kcal Electronic energy + Delta-G solvation = -17306.931557 eV Core-core repulsion = 14462.923630 eV Total energy + Delta-G solvation = -2844.007926 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35854 -38.85586 -36.99184 -33.26118 -31.87408 -30.54297 -30.49497 -28.98191 -26.61744 -23.56032 -22.86299 -22.70588 -21.14620 -20.15620 -18.28062 -16.82042 -16.33470 -15.93792 -15.61852 -15.16867 -14.91447 -14.40097 -14.20460 -13.61923 -13.46505 -12.99195 -12.88400 -12.53021 -12.30342 -11.88172 -11.77965 -11.34866 -11.21652 -11.07967 -10.68165 -10.63476 -10.49420 -10.17538 -9.96900 -9.56847 -9.36234 -8.45960 -8.42617 -7.42941 -6.05388 -4.09571 1.90493 2.05889 3.10195 3.28194 3.35967 3.40952 3.83808 4.19704 4.32828 4.46984 4.54432 4.63162 4.85380 4.95538 5.27435 5.27989 5.32103 5.40714 5.41648 5.51186 5.58471 5.65503 5.87475 6.01495 6.10907 6.24418 6.50380 6.54046 6.80641 7.09199 7.13450 7.31146 7.52891 7.80237 7.82496 7.90448 8.31047 8.96200 9.54536 11.04122 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.043168 B = 0.004096 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.477207 B = 6833.797373 C = 6906.349560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.050 3.950 10 C -0.064 4.064 11 C -0.087 4.087 12 C -0.207 4.207 13 C 0.088 3.912 14 O -0.307 6.307 15 C 0.053 3.947 16 H 0.092 0.908 17 C -0.154 4.154 18 C 0.049 3.951 19 O -0.373 6.373 20 C 0.027 3.973 21 C -0.148 4.148 22 C -0.087 4.087 23 H 0.261 0.739 24 H 0.029 0.971 25 H 0.028 0.972 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.916 -15.428 2.116 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.076 0.924 9 C 0.013 3.987 10 C -0.064 4.064 11 C -0.105 4.105 12 C -0.225 4.225 13 C 0.044 3.956 14 O -0.222 6.222 15 C -0.004 4.004 16 H 0.110 0.890 17 C -0.191 4.191 18 C -0.028 4.028 19 O -0.292 6.292 20 C -0.050 4.050 21 C -0.167 4.167 22 C -0.105 4.105 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.797 -15.506 2.164 19.018 hybrid contribution 0.499 1.139 -0.002 1.244 sum 11.296 -14.367 2.162 18.403 Atomic orbital electron populations 1.69964 1.06031 1.26718 1.50598 1.25017 0.94879 0.99266 0.95197 0.86492 0.80141 0.83518 0.77643 1.19689 1.20915 1.20944 1.21124 0.93093 0.89934 1.50851 0.92439 1.18321 0.92496 0.89535 0.98367 1.20654 0.97742 0.96216 0.91771 1.20908 0.96191 0.94759 0.98631 1.21140 1.03510 1.01709 0.96169 1.18816 0.92723 0.89508 0.94504 1.86042 1.57773 1.48502 1.29842 1.23864 0.93283 0.97620 0.85671 0.89007 1.22970 0.96560 0.97825 1.01787 1.23133 0.87267 0.97420 0.95002 1.88904 1.21461 1.78471 1.40367 1.24087 0.93425 0.93396 0.94133 1.20328 1.01640 0.99317 0.95418 1.20947 0.96139 0.94705 0.98734 0.92888 0.95309 0.95381 0.86066 0.86445 0.89453 0.89115 0.91927 0.89405 0.90925 0.88107 0.86209 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.25 9.09 -34.44 -0.31 -14.56 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.05 1.26 5.10 -29.04 -0.15 1.12 16 10 C -0.06 -1.37 5.07 -104.60 -0.53 -1.90 16 11 C -0.09 -1.67 9.69 -39.61 -0.38 -2.06 16 12 C -0.21 -3.45 8.93 -39.43 -0.35 -3.80 16 13 C 0.09 1.47 6.68 -39.22 -0.26 1.20 16 14 O -0.31 -4.50 9.90 -19.45 -0.19 -4.69 16 15 C 0.05 0.63 2.90 -24.72 -0.07 0.56 16 16 H 0.09 1.09 6.25 -51.93 -0.32 0.77 16 17 C -0.15 -1.41 6.78 -25.20 -0.17 -1.58 16 18 C 0.05 0.42 7.70 37.73 0.29 0.71 16 19 O -0.37 -4.34 11.52 -35.23 -0.41 -4.74 16 20 C 0.03 0.30 7.31 38.21 0.28 0.58 16 21 C -0.15 -2.56 9.99 -39.43 -0.39 -2.95 16 22 C -0.09 -1.69 9.69 -39.61 -0.38 -2.07 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 25 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 26 H 0.12 2.25 8.06 -52.48 -0.42 1.83 16 27 H 0.12 1.65 5.63 -52.49 -0.30 1.36 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.10 7.78 -51.93 -0.40 0.70 16 34 H 0.12 1.80 8.06 -52.48 -0.42 1.37 16 35 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 296.65 15.07 4.47 4.47 Total: -1.00 -30.28 296.65 -7.73 -38.01 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.78 Total: -0.70 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -2.54 Total: -23.22 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.74 Total: -25.53 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.60 Total: -9.43 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.28 -7.73 -38.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.652 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds