Wall clock time and date at job start Mon Mar 30 2020 06:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00027 * 2 1 4 4 H 1.48501 * 109.47060 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46927 * 299.99678 * 3 2 1 6 6 H 1.48503 * 109.47331 * 59.99650 * 3 2 1 7 7 C 1.37882 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47478 * 180.02562 * 9 7 2 11 11 C 1.38262 * 119.94294 * 89.99572 * 10 9 7 12 12 C 1.38146 * 120.05821 * 180.02562 * 11 10 9 13 13 C 1.38732 * 119.93975 * 0.02562 * 12 11 10 14 14 O 1.35908 * 120.05592 * 179.97438 * 13 12 11 15 15 C 1.42902 * 116.99297 * 354.35240 * 14 13 12 16 16 H 1.08991 * 110.83692 * 327.41047 * 15 14 13 17 17 C 1.54809 * 110.90200 * 203.75870 * 15 14 13 18 18 C 1.54103 * 104.18980 * 220.92326 * 17 15 14 19 19 O 1.43741 * 107.29141 * 357.97280 * 18 17 15 20 20 C 1.44377 * 106.97616 * 26.51299 * 19 18 17 21 21 C 1.38729 * 119.89042 * 0.27082 * 13 12 11 22 22 C 1.38147 * 119.94160 * 359.46787 * 21 13 12 23 23 H 0.96996 * 120.00156 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47448 * 60.00294 * 9 7 2 25 25 H 1.08999 * 109.47564 * 300.00127 * 9 7 2 26 26 H 1.08005 * 119.97615 * 359.97438 * 11 10 9 27 27 H 1.07999 * 120.02958 * 180.02562 * 12 11 10 28 28 H 1.09002 * 110.48904 * 102.24981 * 17 15 14 29 29 H 1.09001 * 110.49047 * 339.60068 * 17 15 14 30 30 H 1.08997 * 109.87694 * 117.39769 * 18 17 15 31 31 H 1.08994 * 109.87744 * 238.39779 * 18 17 15 32 32 H 1.08999 * 110.62085 * 78.43604 * 20 19 18 33 33 H 1.09006 * 110.62189 * 201.27861 * 20 19 18 34 34 H 1.08004 * 120.03051 * 179.72590 * 21 13 12 35 35 H 1.08002 * 119.97226 * 180.27397 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2303 -3.6447 0.0027 11 6 2.6788 -4.1681 1.2013 12 6 3.5768 -5.2179 1.2050 13 6 4.0290 -5.7464 0.0047 14 8 4.9129 -6.7788 0.0056 15 6 5.4296 -7.1892 1.2731 16 1 5.5162 -6.3394 1.9501 17 6 6.7921 -7.9055 1.1085 18 6 6.7200 -9.0860 2.0965 19 8 5.4577 -8.9963 2.7781 20 6 4.5498 -8.3038 1.8944 21 6 3.5822 -5.2154 -1.1966 22 6 2.6800 -4.1692 -1.1948 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5576 -0.8880 25 1 0.6247 -2.5563 0.8919 26 1 2.3274 -3.7555 2.1355 27 1 3.9265 -5.6266 2.1415 28 1 7.6099 -7.2355 1.3737 29 1 6.9112 -8.2691 0.0878 30 1 6.7816 -10.0286 1.5528 31 1 7.5372 -9.0185 2.8147 32 1 4.1794 -8.9764 1.1208 33 1 3.7208 -7.8734 2.4562 34 1 3.9362 -5.6223 -2.1323 35 1 2.3285 -3.7584 -2.1297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260654201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:15 Heat of formation + Delta-G solvation = -84.394978 kcal Electronic energy + Delta-G solvation = -17307.700464 eV Core-core repulsion = 14462.923630 eV Total energy + Delta-G solvation = -2844.776834 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45483 -39.96979 -38.27205 -35.26348 -33.01543 -32.06932 -31.85248 -29.86858 -28.41824 -25.21283 -24.18724 -23.69444 -22.37803 -21.50655 -19.44458 -18.50317 -17.72146 -16.98922 -16.73991 -16.52576 -16.26886 -15.83402 -15.41540 -15.00396 -14.55056 -14.42412 -14.24214 -14.10184 -13.50523 -13.31879 -13.18148 -12.78038 -12.58054 -12.48374 -12.44334 -12.09726 -11.73583 -11.52431 -11.48352 -11.26424 -10.75103 -10.60645 -9.87050 -8.93239 -8.18414 -6.32981 0.47015 0.59125 1.39682 1.40365 1.53672 2.03899 2.39876 2.92744 3.01869 3.10963 3.39989 3.69154 3.79007 3.96671 4.01612 4.15825 4.17776 4.35983 4.43968 4.60646 4.60939 4.69926 4.78697 4.81146 4.91421 5.00283 5.07070 5.32978 5.36882 5.39780 5.53724 5.69905 5.75579 5.89684 6.06404 6.19155 6.49612 6.80239 7.35783 8.89605 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.043168 B = 0.004096 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.477207 B = 6833.797373 C = 6906.349560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.059 3.941 10 C -0.097 4.097 11 C -0.095 4.095 12 C -0.198 4.198 13 C 0.100 3.900 14 O -0.306 6.306 15 C 0.042 3.958 16 H 0.093 0.907 17 C -0.148 4.148 18 C 0.045 3.955 19 O -0.391 6.391 20 C 0.028 3.972 21 C -0.147 4.147 22 C -0.094 4.094 23 H 0.265 0.735 24 H 0.004 0.996 25 H 0.003 0.997 26 H 0.120 0.880 27 H 0.146 0.854 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.146 0.854 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.335 -16.361 2.320 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.072 0.928 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.113 4.113 12 C -0.216 4.216 13 C 0.056 3.944 14 O -0.221 6.221 15 C -0.015 4.015 16 H 0.111 0.889 17 C -0.185 4.185 18 C -0.031 4.031 19 O -0.310 6.310 20 C -0.049 4.049 21 C -0.165 4.165 22 C -0.112 4.112 23 H 0.074 0.926 24 H 0.023 0.977 25 H 0.021 0.979 26 H 0.138 0.862 27 H 0.164 0.836 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.163 0.837 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.231 -16.460 2.371 21.251 hybrid contribution -0.189 1.275 -0.042 1.290 sum 13.042 -15.184 2.329 20.152 Atomic orbital electron populations 1.70083 1.07649 1.27871 1.51428 1.25922 0.95755 1.03081 0.94635 0.85398 0.78903 0.78802 0.77955 1.18989 1.20144 1.20195 1.21438 0.93086 0.91321 1.50751 0.92786 1.18059 0.92818 0.91036 0.95894 1.20359 0.98989 0.96579 0.93780 1.20929 0.96959 0.95684 0.97750 1.21318 1.02222 1.00440 0.97669 1.18898 0.92085 0.89260 0.94163 1.86059 1.56942 1.47389 1.31683 1.24157 0.94824 0.97999 0.84533 0.88899 1.23008 0.95265 0.97951 1.02307 1.23348 0.86593 0.97771 0.95429 1.88891 1.22603 1.78502 1.41004 1.24048 0.93457 0.93258 0.94145 1.20514 1.00676 0.98398 0.96954 1.20951 0.96781 0.95517 0.97920 0.92578 0.97741 0.97868 0.86236 0.83632 0.87959 0.88662 0.90671 0.87523 0.90837 0.88139 0.83663 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.96 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.53 -30.21 9.09 25.60 0.23 -29.98 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.06 3.16 5.10 29.10 0.15 3.31 16 10 C -0.10 -4.28 5.07 -19.85 -0.10 -4.38 16 11 C -0.10 -3.68 9.69 22.25 0.22 -3.46 16 12 C -0.20 -6.28 8.93 22.37 0.20 -6.08 16 13 C 0.10 3.12 6.68 22.51 0.15 3.27 16 14 O -0.31 -8.08 9.90 -92.51 -0.92 -9.00 16 15 C 0.04 0.86 2.90 31.90 0.09 0.96 16 16 H 0.09 1.93 6.25 -2.39 -0.01 1.91 16 17 C -0.15 -2.21 6.78 31.59 0.21 -1.99 16 18 C 0.04 0.63 7.70 72.36 0.56 1.19 16 19 O -0.39 -8.11 11.52 -148.98 -1.72 -9.83 16 20 C 0.03 0.57 7.31 72.67 0.53 1.10 16 21 C -0.15 -4.82 9.99 22.37 0.22 -4.59 16 22 C -0.09 -3.63 9.69 22.25 0.22 -3.42 16 23 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 24 H 0.00 0.24 8.09 -2.39 -0.02 0.22 16 25 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 26 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 27 H 0.15 3.73 5.63 -2.91 -0.02 3.71 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 1.36 8.08 -2.39 -0.02 1.34 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 2.00 7.78 -2.38 -0.02 1.98 16 34 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -65.51 296.65 3.89 -61.61 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 1.07 Total: 10.08 kcal Atomic # 6 Polarization: -46.54 SS G_CDS: 3.14 Total: -43.40 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.28 Total: -55.76 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -2.63 Total: -18.82 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -65.51 3.89 -61.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.782 kcal (2) G-P(sol) polarization free energy of solvation -65.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds