Wall clock time and date at job start Mon Mar 30 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08992 * 109.47432 * 2 1 4 4 C 1.50698 * 109.46946 * 240.00019 * 2 1 3 5 5 H 1.08004 * 120.00225 * 268.54921 * 4 2 1 6 6 C 1.37872 * 120.00196 * 88.55219 * 4 2 1 7 7 N 1.31514 * 120.00282 * 353.32362 * 6 4 2 8 8 Si 1.86799 * 120.00109 * 173.31927 * 6 4 2 9 9 H 1.48503 * 109.46995 * 90.00287 * 8 6 4 10 10 H 1.48505 * 109.47331 * 210.00185 * 8 6 4 11 11 H 1.48497 * 109.47348 * 330.00052 * 8 6 4 12 12 C 1.50697 * 109.46896 * 120.00264 * 2 1 3 13 13 N 1.30249 * 126.10007 * 59.69063 * 12 2 1 14 14 N 1.39878 * 110.07662 * 179.84071 * 13 12 2 15 15 C 1.46503 * 125.46981 * 180.16223 * 14 13 12 16 16 C 1.37107 * 109.05333 * 0.43301 * 14 13 12 17 17 C 1.40764 * 106.75279 * 359.75136 * 16 14 13 18 18 C 1.39957 * 119.75091 * 180.02562 * 17 16 14 19 19 C 1.36449 * 119.82490 * 359.97438 * 18 17 16 20 20 C 1.38942 * 120.65908 * 0.03064 * 19 18 17 21 21 C 1.37805 * 120.63563 * 359.97061 * 20 19 18 22 22 F 1.35101 * 120.14931 * 180.02562 * 21 20 19 23 23 H 1.08998 * 109.47307 * 297.01370 * 1 2 3 24 24 H 1.09008 * 109.47299 * 57.01289 * 1 2 3 25 25 H 1.09001 * 109.47523 * 177.01176 * 1 2 3 26 26 H 0.97005 * 119.99361 * 354.55190 * 7 6 4 27 27 H 1.09001 * 109.46942 * 270.31355 * 15 14 13 28 28 H 1.09005 * 109.46648 * 30.31209 * 15 14 13 29 29 H 1.08998 * 109.46956 * 150.31082 * 15 14 13 30 30 H 1.08002 * 120.08476 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.66677 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.67927 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.2346 -1.7708 -1.1971 6 6 2.2336 -0.0067 -2.3989 7 7 1.8648 1.2531 -2.4797 8 14 3.0302 -0.8426 -3.8672 9 1 1.9796 -1.4629 -4.7138 10 1 3.7782 0.1631 -4.6637 11 1 3.9663 -1.8926 -3.3913 12 6 2.0322 -0.7105 1.2304 13 7 1.7872 -1.9476 1.5560 14 7 2.4220 -2.2613 2.7623 15 6 2.3737 -3.5618 3.4352 16 6 3.0916 -1.1546 3.2168 17 6 2.8748 -0.1331 2.2729 18 6 3.4443 1.1296 2.4728 19 6 4.2054 1.3630 3.5810 20 6 4.4227 0.3583 4.5158 21 6 3.8731 -0.8934 4.3419 22 9 4.0903 -1.8630 5.2573 23 1 -0.3634 0.4668 0.9155 24 1 -0.3634 0.5595 -0.8621 25 1 -0.3634 -1.0262 -0.0536 26 1 1.3805 1.6646 -1.7468 27 1 1.5225 -3.5874 4.1156 28 1 2.2685 -4.3519 2.6916 29 1 3.2942 -3.7136 3.9989 30 1 3.2811 1.9174 1.7523 31 1 4.6440 2.3383 3.7325 32 1 5.0281 0.5603 5.3870 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260661579.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:49 Heat of formation + Delta-G solvation = 28.941883 kcal Electronic energy + Delta-G solvation = -17704.935714 eV Core-core repulsion = 14773.905981 eV Total energy + Delta-G solvation = -2931.029732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.73384 -40.77447 -36.85091 -35.06673 -32.58967 -30.18937 -29.85335 -29.50664 -25.89300 -24.77058 -22.96630 -22.08266 -21.66062 -19.17556 -17.31085 -17.16780 -16.28340 -15.79144 -15.77961 -14.94724 -14.66797 -14.31000 -13.86364 -13.67138 -13.05534 -12.93955 -12.67539 -12.52233 -11.71686 -11.47189 -11.43649 -11.22636 -11.07084 -10.85005 -10.71563 -10.14888 -10.06515 -9.91762 -9.42328 -8.60642 -8.43056 -8.36840 -7.37354 -6.41815 -4.13282 1.09692 1.63351 2.75790 3.02016 3.43483 3.46519 3.62860 3.94156 4.33531 4.50550 4.72736 4.80703 5.03791 5.20936 5.32833 5.35896 5.43383 5.56247 5.59831 5.92313 5.97826 6.19926 6.30350 6.48170 6.56872 6.65483 6.78329 6.94538 7.11649 7.16304 7.29687 7.48778 8.03749 8.29279 8.42758 8.79666 9.55324 10.96092 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.026420 B = 0.006869 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.564343 B = 4075.378479 C = 4411.681815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.096 3.904 3 H 0.054 0.946 4 C -0.584 4.584 5 H 0.055 0.945 6 C 0.025 3.975 7 N -0.908 5.908 8 Si 1.068 2.932 9 H -0.287 1.287 10 H -0.282 1.282 11 H -0.289 1.289 12 C 0.158 3.842 13 N -0.254 5.254 14 N -0.418 5.418 15 C 0.114 3.886 16 C 0.096 3.904 17 C -0.152 4.152 18 C -0.032 4.032 19 C -0.153 4.153 20 C -0.108 4.108 21 C 0.058 3.942 22 F -0.147 7.147 23 H 0.019 0.981 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.271 0.729 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 -2.079 12.608 13.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.075 3.925 3 H 0.072 0.928 4 C -0.622 4.622 5 H 0.074 0.926 6 C -0.180 4.180 7 N -0.544 5.544 8 Si 0.896 3.104 9 H -0.214 1.214 10 H -0.208 1.208 11 H -0.215 1.215 12 C -0.019 4.019 13 N -0.065 5.065 14 N -0.204 5.204 15 C -0.028 4.028 16 C -0.021 4.021 17 C -0.161 4.161 18 C -0.053 4.053 19 C -0.173 4.173 20 C -0.129 4.129 21 C 0.035 3.965 22 F -0.126 7.126 23 H 0.038 0.962 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.262 -3.163 10.856 11.768 hybrid contribution -0.066 -0.011 2.128 2.129 sum 3.196 -3.174 12.984 13.743 Atomic orbital electron populations 1.21914 0.97708 1.00648 0.98702 1.17695 0.92305 0.95302 0.87174 0.92757 1.21850 1.48543 0.96807 0.95032 0.92641 1.25809 0.95899 0.95636 1.00654 1.70784 1.36114 1.12237 1.35226 0.83559 0.76469 0.75156 0.75198 1.21387 1.20804 1.21521 1.24570 0.92606 0.89950 0.94802 1.76791 1.17102 1.16418 0.96182 1.48332 1.43793 1.09181 1.19045 1.21678 1.02506 0.81709 0.96872 1.18806 0.97664 0.90063 0.95569 1.19978 1.05264 0.94655 0.96171 1.20519 0.93386 0.94887 0.96488 1.20385 1.02553 0.99276 0.95037 1.20843 1.00374 0.90916 1.00778 1.16526 1.04619 0.87415 0.87953 1.91416 1.93868 1.62135 1.65188 0.96152 0.92709 0.93506 0.91784 0.91828 0.89595 0.90181 0.84758 0.84989 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.08 37.15 0.34 -2.65 16 2 C 0.10 2.36 2.37 -92.93 -0.22 2.14 16 3 H 0.05 1.36 6.97 -51.93 -0.36 1.00 16 4 C -0.58 -16.08 8.29 -34.44 -0.29 -16.37 16 5 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 6 C 0.02 0.68 5.45 -17.82 -0.10 0.58 16 7 N -0.91 -26.02 13.55 55.43 0.75 -25.27 16 8 Si 1.07 24.90 29.91 -169.99 -5.08 19.82 16 9 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.16 3.66 5.92 -80.18 -0.47 3.18 16 13 N -0.25 -5.78 12.40 34.84 0.43 -5.35 16 14 N -0.42 -8.14 4.05 -65.41 -0.27 -8.40 16 15 C 0.11 1.63 11.20 59.85 0.67 2.30 16 16 C 0.10 1.83 6.88 -84.10 -0.58 1.26 16 17 C -0.15 -3.10 6.32 -105.21 -0.67 -3.76 16 18 C -0.03 -0.55 10.05 -39.58 -0.40 -0.95 16 19 C -0.15 -2.10 9.96 -39.97 -0.40 -2.50 16 20 C -0.11 -1.48 9.99 -39.48 -0.39 -1.88 16 21 C 0.06 0.95 7.32 -39.29 -0.29 0.66 16 22 F -0.15 -2.24 15.92 2.25 0.04 -2.21 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 1.27 7.65 -51.92 -0.40 0.87 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.27 7.59 6.36 -40.82 -0.26 7.33 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.01 7.03 -51.93 -0.37 0.65 16 30 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 31 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 32 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -30.85 282.57 -6.21 -37.07 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -3.55 Total: -1.94 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.79 Total: -17.98 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.92 Total: -39.03 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.85 -6.21 -37.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260661579.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.007 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds