Wall clock time and date at job start Mon Mar 30 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08992 * 109.47432 * 2 1 4 4 C 1.50698 * 109.46946 * 240.00019 * 2 1 3 5 5 H 1.08004 * 120.00225 * 268.54921 * 4 2 1 6 6 C 1.37872 * 120.00196 * 88.55219 * 4 2 1 7 7 N 1.31514 * 120.00282 * 353.32362 * 6 4 2 8 8 Si 1.86799 * 120.00109 * 173.31927 * 6 4 2 9 9 H 1.48503 * 109.46995 * 90.00287 * 8 6 4 10 10 H 1.48505 * 109.47331 * 210.00185 * 8 6 4 11 11 H 1.48497 * 109.47348 * 330.00052 * 8 6 4 12 12 C 1.50697 * 109.46896 * 120.00264 * 2 1 3 13 13 N 1.30249 * 126.10007 * 59.69063 * 12 2 1 14 14 N 1.39878 * 110.07662 * 179.84071 * 13 12 2 15 15 C 1.46503 * 125.46981 * 180.16223 * 14 13 12 16 16 C 1.37107 * 109.05333 * 0.43301 * 14 13 12 17 17 C 1.40764 * 106.75279 * 359.75136 * 16 14 13 18 18 C 1.39957 * 119.75091 * 180.02562 * 17 16 14 19 19 C 1.36449 * 119.82490 * 359.97438 * 18 17 16 20 20 C 1.38942 * 120.65908 * 0.03064 * 19 18 17 21 21 C 1.37805 * 120.63563 * 359.97061 * 20 19 18 22 22 F 1.35101 * 120.14931 * 180.02562 * 21 20 19 23 23 H 1.08998 * 109.47307 * 297.01370 * 1 2 3 24 24 H 1.09008 * 109.47299 * 57.01289 * 1 2 3 25 25 H 1.09001 * 109.47523 * 177.01176 * 1 2 3 26 26 H 0.97005 * 119.99361 * 354.55190 * 7 6 4 27 27 H 1.09001 * 109.46942 * 270.31355 * 15 14 13 28 28 H 1.09005 * 109.46648 * 30.31209 * 15 14 13 29 29 H 1.08998 * 109.46956 * 150.31082 * 15 14 13 30 30 H 1.08002 * 120.08476 * 180.02562 * 18 17 16 31 31 H 1.08004 * 119.66677 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.67927 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.2346 -1.7708 -1.1971 6 6 2.2336 -0.0067 -2.3989 7 7 1.8648 1.2531 -2.4797 8 14 3.0302 -0.8426 -3.8672 9 1 1.9796 -1.4629 -4.7138 10 1 3.7782 0.1631 -4.6637 11 1 3.9663 -1.8926 -3.3913 12 6 2.0322 -0.7105 1.2304 13 7 1.7872 -1.9476 1.5560 14 7 2.4220 -2.2613 2.7623 15 6 2.3737 -3.5618 3.4352 16 6 3.0916 -1.1546 3.2168 17 6 2.8748 -0.1331 2.2729 18 6 3.4443 1.1296 2.4728 19 6 4.2054 1.3630 3.5810 20 6 4.4227 0.3583 4.5158 21 6 3.8731 -0.8934 4.3419 22 9 4.0903 -1.8630 5.2573 23 1 -0.3634 0.4668 0.9155 24 1 -0.3634 0.5595 -0.8621 25 1 -0.3634 -1.0262 -0.0536 26 1 1.3805 1.6646 -1.7468 27 1 1.5225 -3.5874 4.1156 28 1 2.2685 -4.3519 2.6916 29 1 3.2942 -3.7136 3.9989 30 1 3.2811 1.9174 1.7523 31 1 4.6440 2.3383 3.7325 32 1 5.0281 0.5603 5.3870 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260661579.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:49 Heat of formation + Delta-G solvation = 11.156649 kcal Electronic energy + Delta-G solvation = -17705.706939 eV Core-core repulsion = 14773.905981 eV Total energy + Delta-G solvation = -2931.800958 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.93298 -42.20953 -38.15174 -36.91399 -34.27529 -31.96010 -31.09952 -30.90732 -27.35966 -26.74879 -24.44573 -23.60934 -23.07771 -20.80496 -18.95380 -18.62928 -17.81045 -17.07982 -17.03298 -16.37995 -15.98792 -15.74166 -15.58400 -15.42157 -14.71105 -14.27355 -13.96844 -13.79106 -13.39795 -13.28829 -12.88970 -12.65568 -12.60367 -12.51428 -12.38132 -11.97452 -11.80841 -11.68722 -10.95709 -10.60244 -10.41919 -9.76409 -8.76909 -8.58235 -6.32467 -0.21105 0.36368 1.40768 1.44885 1.54504 1.61490 1.79869 2.55342 2.64015 3.06302 3.18709 3.44261 3.50919 3.75759 3.92497 4.27352 4.27868 4.32698 4.45196 4.49329 4.55829 4.75117 4.78524 4.85607 5.00601 5.12494 5.21607 5.37217 5.44142 5.62186 5.81417 6.00027 6.02583 6.20023 6.61017 6.72890 7.41802 8.78173 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.026420 B = 0.006869 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.564343 B = 4075.378479 C = 4411.681815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.096 3.904 3 H 0.042 0.958 4 C -0.595 4.595 5 H 0.034 0.966 6 C -0.017 4.017 7 N -0.927 5.927 8 Si 1.109 2.891 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.284 1.284 12 C 0.129 3.871 13 N -0.283 5.283 14 N -0.422 5.422 15 C 0.106 3.894 16 C 0.078 3.922 17 C -0.184 4.184 18 C -0.053 4.053 19 C -0.130 4.130 20 C -0.087 4.087 21 C 0.051 3.949 22 F -0.141 7.141 23 H 0.040 0.960 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.265 0.735 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.176 0.824 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.866 -1.739 14.505 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 H 0.060 0.940 4 C -0.634 4.634 5 H 0.053 0.947 6 C -0.217 4.217 7 N -0.564 5.564 8 Si 0.932 3.068 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.209 1.209 12 C -0.048 4.048 13 N -0.096 5.096 14 N -0.210 5.210 15 C -0.034 4.034 16 C -0.039 4.039 17 C -0.192 4.192 18 C -0.073 4.073 19 C -0.149 4.149 20 C -0.108 4.108 21 C 0.028 3.972 22 F -0.120 7.120 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.116 0.884 30 H 0.152 0.848 31 H 0.194 0.806 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.797 -2.826 12.777 13.937 hybrid contribution -0.498 -0.120 1.716 1.791 sum 4.299 -2.945 14.493 15.402 Atomic orbital electron populations 1.21726 0.96754 1.00018 0.99169 1.17508 0.93033 0.94539 0.87371 0.93974 1.22027 1.48676 0.96031 0.96650 0.94708 1.27017 0.95959 0.95669 1.03062 1.70869 1.37314 1.12899 1.35281 0.83018 0.76260 0.74656 0.72865 1.19929 1.20080 1.20948 1.24262 0.94459 0.90686 0.95384 1.76594 1.18234 1.16579 0.98164 1.48594 1.43457 1.10712 1.18235 1.22006 1.04223 0.79972 0.97195 1.19148 0.98553 0.89586 0.96563 1.20157 1.06347 0.96584 0.96103 1.20745 0.94560 0.93831 0.98173 1.20878 1.00032 1.01045 0.92943 1.21401 0.98666 0.89255 1.01512 1.16731 1.04576 0.88567 0.87351 1.91432 1.93766 1.62112 1.64648 0.94107 0.93807 0.94377 0.92492 0.90047 0.89055 0.88377 0.84815 0.80648 0.80244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 9.08 71.98 0.65 -4.92 16 2 C 0.10 4.93 2.37 -12.29 -0.03 4.90 16 3 H 0.04 2.22 6.97 -2.39 -0.02 2.20 16 4 C -0.60 -33.97 8.29 25.60 0.21 -33.75 16 5 H 0.03 2.08 7.82 -2.91 -0.02 2.05 16 6 C -0.02 -0.98 5.45 84.65 0.46 -0.52 16 7 N -0.93 -54.19 13.55 21.45 0.29 -53.90 16 8 Si 1.11 50.63 29.91 68.60 2.05 52.68 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 C 0.13 6.16 5.92 44.79 0.27 6.43 16 13 N -0.28 -13.28 12.40 -43.68 -0.54 -13.82 16 14 N -0.42 -16.45 4.05 -360.87 -1.46 -17.91 16 15 C 0.11 2.93 11.20 127.77 1.43 4.36 16 16 C 0.08 2.92 6.88 39.23 0.27 3.19 16 17 C -0.18 -7.51 6.32 -20.25 -0.13 -7.64 16 18 C -0.05 -1.72 10.05 22.27 0.22 -1.50 16 19 C -0.13 -3.06 9.96 22.02 0.22 -2.84 16 20 C -0.09 -2.00 9.99 22.34 0.22 -1.77 16 21 C 0.05 1.52 7.32 22.46 0.16 1.68 16 22 F -0.14 -3.84 15.92 44.97 0.72 -3.13 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.04 2.10 7.65 -2.38 -0.02 2.08 16 25 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.26 15.31 6.36 -92.70 -0.59 14.72 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.10 2.32 7.03 -2.39 -0.02 2.30 16 30 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.18 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -68.76 282.57 6.33 -62.43 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.31 Total: 6.04 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 3.97 Total: -32.39 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -1.71 Total: -85.63 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.72 Total: -3.13 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.05 Total: 52.68 kcal Total: -68.76 6.33 -62.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260661579.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.589 kcal (2) G-P(sol) polarization free energy of solvation -68.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds